BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142224.5 - phase: 0 /pseudo
(625 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10830 putative protein 243 2e-64
At1g47910 reverse transcriptase, putative 239 3e-63
At2g31520 putative non-LTR retroelement reverse transcriptase 238 7e-63
At2g25550 putative non-LTR retroelement reverse transcriptase 238 7e-63
At3g45550 putative protein 237 2e-62
At4g09710 RNA-directed DNA polymerase -like protein 228 1e-59
At2g01840 putative non-LTR retroelement reverse transcriptase 226 4e-59
At2g45230 putative non-LTR retroelement reverse transcriptase 224 1e-58
At2g11240 pseudogene 220 2e-57
At2g17910 putative non-LTR retroelement reverse transcriptase 216 4e-56
At1g24640 hypothetical protein 213 3e-55
At2g41580 putative non-LTR retroelement reverse transcriptase 211 1e-54
At2g05200 putative non-LTR retroelement reverse transcriptase 210 2e-54
At2g16680 putative non-LTR retroelement reverse transcriptase 205 5e-53
At3g31420 hypothetical protein 197 1e-50
At2g31080 putative non-LTR retroelement reverse transcriptase 187 2e-47
At2g15540 putative non-LTR retroelement reverse transcriptase 187 2e-47
At2g17610 putative non-LTR retroelement reverse transcriptase 186 4e-47
At3g32110 non-LTR reverse transcriptase, putative 175 6e-44
At4g15590 reverse transcriptase like protein 173 3e-43
>At4g10830 putative protein
Length = 1294
Score = 243 bits (621), Expect = 2e-64
Identities = 133/327 (40%), Positives = 189/327 (57%), Gaps = 15/327 (4%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
TNI +I KI P+++ P++LCNV+YKI+SK L RLK L +SDSQAAF+P R +
Sbjct: 849 TNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLV 908
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KKWDSQM 375
+N + E++H +K + + + +A+K DVSKA+DR++W++L+ M + W +
Sbjct: 909 NDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWI 968
Query: 376 FGLTGSCNV*---------PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
G S N I P GIRQG P SPYL+I+C++ LN IK+ G I G
Sbjct: 969 MGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRG 1028
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
RI G P +T L FADDS F ++ V LK++ YE SGQ IN KS I F
Sbjct: 1029 IRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSR 1088
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
+ + ++LG+ GKYLGLP R K+ +F++I ER+ K +WSA LS
Sbjct: 1089 VHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSP 1148
Query: 547 AGKEVLLKSIAQYIPTYSWAIFCSLPL 573
AGKE++LKS+A +P Y+ + F LPL
Sbjct: 1149 AGKEIMLKSVAMSMPVYAMSCF-KLPL 1174
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 239 bits (610), Expect = 3e-63
Identities = 134/334 (40%), Positives = 196/334 (58%), Gaps = 14/334 (4%)
Query: 249 VSEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCIS 308
+ EG F L TNI LI K +RP M L P+SLCNV YK++SK+L RLK +L IS
Sbjct: 259 LQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLIS 318
Query: 309 DSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME 368
++Q+AFV R I +N L E+ H ++ + K+ +A+K D+SKA+D+++W++++A++
Sbjct: 319 ETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLR 378
Query: 369 K-----KWDSQMFGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSY 414
K KW S + + N P I P G+RQG P SPYL+I+C+E L +
Sbjct: 379 KMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIAN 438
Query: 415 IKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAI 474
I+ E LI G ++ SP+++ LLFADDS F KA + I+ IL YE+ SGQ I
Sbjct: 439 IRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQI 498
Query: 475 NYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWK 534
N+ KSSI F + +I +LG+ G YLGLP + K +FSF+++R+
Sbjct: 499 NFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQS 558
Query: 535 NIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
I WSA LS+ GKEV++KS+A +P Y + F
Sbjct: 559 RINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCF 592
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 238 bits (607), Expect = 7e-63
Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 14/327 (4%)
Query: 256 PNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFV 315
P++ TNI +I KI P ++ P++LCNV+YK++SK L NRLK L+ +SDSQAAF+
Sbjct: 638 PSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFI 697
Query: 316 PSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KK 370
P R I +N + EV+H +K + + + +A+K DVSKA+DR++W +L+ M K
Sbjct: 698 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 757
Query: 371 WDSQMFGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENT 421
W + S N P I P GIRQG P SPYL+I+C + L+ I ++
Sbjct: 758 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 817
Query: 422 GLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSI 481
G + G RI G+P+IT L FADDS F +A V LK++ YE SGQ IN +KS I
Sbjct: 818 GDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 877
Query: 482 AFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSA 541
F + +L + GKYLGLP R KK +F +I +R+ K WSA
Sbjct: 878 TFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSA 937
Query: 542 WSLSRAGKEVLLKSIAQYIPTYSWAIF 568
LS AGKE++LKS+A +P Y+ + F
Sbjct: 938 RFLSPAGKEIMLKSVALAMPVYAMSCF 964
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 238 bits (607), Expect = 7e-63
Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 14/327 (4%)
Query: 256 PNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFV 315
P++ TNI +I KI P ++ P++LCNV+YK++SK L NRLK L+ +SDSQAAF+
Sbjct: 864 PSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFI 923
Query: 316 PSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KK 370
P R I +N + EV+H +K + + + +A+K DVSKA+DR++W +L+ M K
Sbjct: 924 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 983
Query: 371 WDSQMFGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENT 421
W + S N P I P GIRQG P SPYL+I+C + L+ I ++
Sbjct: 984 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 1043
Query: 422 GLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSI 481
G + G RI G+P+IT L FADDS F +A V LK++ YE SGQ IN +KS I
Sbjct: 1044 GDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 1103
Query: 482 AFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSA 541
F + +L + GKYLGLP R KK +F +I +R+ K WSA
Sbjct: 1104 TFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSA 1163
Query: 542 WSLSRAGKEVLLKSIAQYIPTYSWAIF 568
LS AGKE++LKS+A +P Y+ + F
Sbjct: 1164 RFLSPAGKEIMLKSVALAMPVYAMSCF 1190
>At3g45550 putative protein
Length = 851
Score = 237 bits (604), Expect = 2e-62
Identities = 132/322 (40%), Positives = 187/322 (57%), Gaps = 14/322 (4%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
TNI +I KI P+++ P++LCNV+YK++SK + NRLK L+ +SDSQAAF+P R I
Sbjct: 108 TNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRII 167
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KKWDSQM 375
+N + E++H +K + + + +A+K DVSKA+DR++W +L+ M KW +
Sbjct: 168 NDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWI 227
Query: 376 FGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
S N P I P GIRQG P SPYL+I+C + L+ IK ++G I G
Sbjct: 228 MAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRG 287
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
RI G+P+IT L FADDS F +A V LK++ YE SGQ IN +KS I F
Sbjct: 288 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSR 347
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
+ LL + GKYLGLP R KK +F++I +R+ + +WSA LS
Sbjct: 348 VYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSP 407
Query: 547 AGKEVLLKSIAQYIPTYSWAIF 568
AGKE+LLKS+A +P Y+ + F
Sbjct: 408 AGKEILLKSVALAMPVYAMSCF 429
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 228 bits (580), Expect = 1e-59
Identities = 132/328 (40%), Positives = 189/328 (57%), Gaps = 16/328 (4%)
Query: 256 PNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFV 315
P L +T++ LI KI P+ + P++LCNV YKI++K+L RL+ L + IS Q+AFV
Sbjct: 423 PRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFV 482
Query: 316 PSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK-----K 370
P R I +N L E+LH+++ K ++A+K D+SKA+DRIKW++LQ V+ + K
Sbjct: 483 PGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDK 542
Query: 371 W----------DSQMFGLTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHEN 420
W S F + GS + P G+RQG P SPYL+I+C+E L+ + +
Sbjct: 543 WIRWVMQCVCTVSYSFLINGSPQG-SVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQE 601
Query: 421 TGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSS 480
G++ G R+ RGSP + LLFADD+ F K + L NIL YE ASGQ+IN KS+
Sbjct: 602 KGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSA 661
Query: 481 IAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWS 540
I FS T + L + GKYLGLP R K+ IFS I +RI + +WS
Sbjct: 662 ITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWS 721
Query: 541 AWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
LS AGK++LLK++ +P+Y+ F
Sbjct: 722 IRFLSSAGKQILLKAVLSSMPSYAMMCF 749
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 226 bits (575), Expect = 4e-59
Identities = 130/322 (40%), Positives = 183/322 (56%), Gaps = 14/322 (4%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
T I LI KI PK M P+SLC YKI+SK+L RLKQ L ISDSQAAFVP + I
Sbjct: 849 TQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNI 908
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK-----KWDSQM 375
+N L E+LH +K + + + G +A+K D+SKA+DR++W++L+ VM + +W +
Sbjct: 909 SDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWI 968
Query: 376 FGLTGSCNV*---------PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
S + I P GIRQG P SPYL++ C+E L++ ++ E IHG
Sbjct: 969 MTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHG 1028
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
+I + +I+ LLFADDS F +A L I YE ASGQ INY KSSI F +
Sbjct: 1029 MKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQK 1088
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
++ + LLG+ GKYLGLP + R K +F +I ++ + + W+ LS
Sbjct: 1089 IPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSP 1148
Query: 547 AGKEVLLKSIAQYIPTYSWAIF 568
AGKE+++K+IA +P YS F
Sbjct: 1149 AGKEIVIKAIAMALPVYSMNCF 1170
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 224 bits (570), Expect = 1e-58
Identities = 129/331 (38%), Positives = 183/331 (54%), Gaps = 14/331 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
GS + TNI LI KI + + M P+SLCNVIYK++ K++ANRLK+IL IS++Q
Sbjct: 478 GSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQ 537
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME--- 368
AAFV R I +N L E+LH + K E IA+K D+SKA+DR++W +L+ M
Sbjct: 538 AAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLG 597
Query: 369 --KKWDSQMFGLTGS------CNV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
W + S N P I P G+RQG P SPYL++IC+E L ++
Sbjct: 598 FADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQS 657
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
E I G ++ RG+P I+ LLFADDS + K + I+ Y ASGQ +NY
Sbjct: 658 AEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYL 717
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KSSI F ++ + LG+ G YLGLP + K + S++K+R+ K +
Sbjct: 718 KSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVL 777
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
W + LS GKE+LLK++A +PTY+ + F
Sbjct: 778 GWQSNFLSPGGKEILLKAVAMALPTYTMSCF 808
>At2g11240 pseudogene
Length = 1044
Score = 220 bits (561), Expect = 2e-57
Identities = 131/334 (39%), Positives = 188/334 (56%), Gaps = 16/334 (4%)
Query: 250 SEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISD 309
S + P + T+I LI KI K M P++LC V YKI+SK+L+ RL+ IL + IS+
Sbjct: 302 SSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISE 361
Query: 310 SQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK 369
+Q+AFVP R +N L E LHY+K K +A+K ++SKA+DRI+W +++ VM++
Sbjct: 362 NQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQE 421
Query: 370 --------KW-------DSQMFGLTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSY 414
W S F L GS + P G+RQG P SP+L+IICSE L+
Sbjct: 422 MGFHQTWISWILQCITTVSYSFLLNGSAQG-AVTPERGLRQGDPLSPFLFIICSEVLSGL 480
Query: 415 IKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAI 474
+ + G + G R+ +G+P + LLFADD+ F ++ + IL YE ASGQ I
Sbjct: 481 CRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMI 540
Query: 475 NYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWK 534
N KS+I FSR T +LG+ GKYLGLP M R K+ +F+ I +RI +
Sbjct: 541 NKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQ 600
Query: 535 NIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
+WS+ LS AGK +LKS+ +PTY+ + F
Sbjct: 601 RSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCF 634
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 216 bits (549), Expect = 4e-56
Identities = 130/331 (39%), Positives = 180/331 (54%), Gaps = 14/331 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
G P + T+I LI KI P+ M L P+SLC+V+YKI+SK+L RLK+ L +S +Q
Sbjct: 456 GVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQ 515
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVM---- 367
+AFVP R I +N L E++H ++ + + ++A K D+SKA+DR++W +L+ +M
Sbjct: 516 SAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALG 575
Query: 368 -EKKWDSQMFGLTGS------CNV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
KW S + S N P I P GIRQG P SP L+++C+E L +
Sbjct: 576 FNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNK 635
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
E G I G + S+ LLFADD+ L KA E L L Y SGQ IN
Sbjct: 636 AEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLN 695
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KS+I F +N D I G+ GKYLGLP + K+ +F FIKE++ +
Sbjct: 696 KSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLT 755
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
W A +LS+ GKEVLLKSIA +P Y + F
Sbjct: 756 GWYAKTLSQGGKEVLLKSIALALPVYVMSCF 786
>At1g24640 hypothetical protein
Length = 1270
Score = 213 bits (541), Expect = 3e-55
Identities = 120/342 (35%), Positives = 183/342 (53%), Gaps = 15/342 (4%)
Query: 246 KPIVSEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHK 305
K ++G P T++ LI K P M L P+SLC+V+YKI+SK++A RL+ L +
Sbjct: 435 KKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPE 494
Query: 306 CISDSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQA 365
+SD+Q+AFV R I +N L E++H +K + +A+K D+SKA+DR++WSYL++
Sbjct: 495 IVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRS 554
Query: 366 VM-----EKKWDSQMFGLTGSCNV*PIDPHC---------GIRQGGPFSPYLYIICSEGL 411
++ KW + + S + C G+RQG P SP+L+++C+EGL
Sbjct: 555 LLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 614
Query: 412 NSYIKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASG 471
+ + G + G + P + LLFADDS KA + +L+ IL Y A+G
Sbjct: 615 THLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATG 674
Query: 472 QAINYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKER 531
Q IN KSSI F D I LG+ G YLGLP K + ++K+R
Sbjct: 675 QTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDR 734
Query: 532 IWKNIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIFCSLPL 573
+ + + W LS+ GKEVLLKS+A +P ++ + F LP+
Sbjct: 735 LKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCF-KLPI 775
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 211 bits (536), Expect = 1e-54
Identities = 119/331 (35%), Positives = 179/331 (53%), Gaps = 14/331 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
G P + T++ LI KI +P M + P+SLC+V+YKI+SK+L+ RLK+ L +S +Q
Sbjct: 207 GILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQ 266
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVM---- 367
+AFV R + +N + E++H ++ K + + K D+SKA+DR++W +L+ ++
Sbjct: 267 SAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALG 326
Query: 368 -EKKWDSQMFGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
W + M S N P I PH G+RQG P SP+L+++C+E L +
Sbjct: 327 FNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQ 386
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
E G I G + PS+ LLFADD+ L KA E + + L Y SGQ IN
Sbjct: 387 AEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSE 446
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KS+I F + I + G+ GKYLGLP + K+ +F FIKE++ +
Sbjct: 447 KSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLS 506
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
W A +LS+ GK++LLKSIA P Y+ F
Sbjct: 507 GWYAKTLSQGGKDILLKSIAMAFPVYAMTCF 537
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 210 bits (534), Expect = 2e-54
Identities = 118/331 (35%), Positives = 188/331 (56%), Gaps = 16/331 (4%)
Query: 253 SFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQA 312
+FP + +T+I LI K P+ + P++LCN+ YKI++K++ R++ IL K IS++Q+
Sbjct: 374 NFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQS 433
Query: 313 AFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK--- 369
AFVP R I +N L EVLH+++ + K ++A+K D+SKA+DR++W +L+ V+++
Sbjct: 434 AFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGF 493
Query: 370 -----KWD-------SQMFGLTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
W S F + G+ + P G+RQG P SP L+I+C+E L+
Sbjct: 494 HSIWIDWVLECVTSVSYSFLINGTPQG-KVVPTRGLRQGDPLSPCLFILCTEVLSGLCTR 552
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
+ + G R+ P + LLFADD+ F K+ L IL Y ASGQ+IN+
Sbjct: 553 AQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFH 612
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KSS+ FS T + +L + + GKYLGLP R K+ IF I ++I +
Sbjct: 613 KSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSH 672
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
+W++ LS+AGK+V+LK++ +P YS + F
Sbjct: 673 SWASRFLSQAGKQVMLKAVLASMPLYSMSCF 703
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 205 bits (522), Expect = 5e-53
Identities = 119/331 (35%), Positives = 178/331 (52%), Gaps = 14/331 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
G P T++ LI K P+ M + P+SLC+V+YKI+SK+L+ +LK+ L +S SQ
Sbjct: 430 GVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQ 489
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVM---- 367
+AF R I +N L E++H ++ K + + K D+SKA+DR++WS+LQ ++
Sbjct: 490 SAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALG 549
Query: 368 -EKKWDSQMFGLTGSC---------NV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
KW S + G S + I P GIRQG P SP+L+++C+E L ++
Sbjct: 550 FNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQ 609
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
EN+ + G + PS+ LLF DD+ L +A S+ + L Y SGQ IN
Sbjct: 610 AENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVE 669
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KSSI F D I + G+ GKYLGLP + K+ +F +IKE++ ++
Sbjct: 670 KSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLS 729
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
W +LS+ GKE+LLKSIA +P Y F
Sbjct: 730 GWYDKTLSQGGKEILLKSIALALPVYIMTCF 760
>At3g31420 hypothetical protein
Length = 1491
Score = 197 bits (501), Expect = 1e-50
Identities = 119/322 (36%), Positives = 169/322 (51%), Gaps = 41/322 (12%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
TN+ LI K++ P ++ P++LCNV YKI+SK+L NRLK+ L I+++QAAFVP R I
Sbjct: 672 TNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITENQAAFVPGRLI 731
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK-----KWDSQ- 374
NA+ EV + +K + + +ALK D++KA+DR++W +L+ M + KW +
Sbjct: 732 TNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQMGFNTKWIERI 791
Query: 375 -----MFGLTGSCNV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
M + N P I P GIR G P SPYL+I+C+E L+ IK E + G
Sbjct: 792 MICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVLSHMIKQAEINKKLKG 851
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
R+ P I+ LLFADDS F A T +K
Sbjct: 852 IRLSTQGPFISHLLFADDSIFFTLANQRSCTAIK-------------------------- 885
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
+ + HLLG+ GKYLGLP + KK +F++I E++ Q WS LS+
Sbjct: 886 -EPDTKRRMRHLLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEKVKDKTQGWSKKFLSQ 944
Query: 547 AGKEVLLKSIAQYIPTYSWAIF 568
GKEVLLK++A +P YS IF
Sbjct: 945 GGKEVLLKAVALAMPVYSMNIF 966
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 187 bits (475), Expect = 2e-47
Identities = 110/326 (33%), Positives = 176/326 (53%), Gaps = 15/326 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
G P + D + LIAK+ +P+ ++ PVSLCNV++KI++K++ RLK ++ K I +Q
Sbjct: 342 GVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQ 401
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME--- 368
A+F+P R ++N + E +H M+ K KG++G + LK D+ KA+DR++W +LQ +E
Sbjct: 402 ASFIPGRLSIDNIVLVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAG 460
Query: 369 --KKWDSQ-MFGLTGSC--------NV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
+ W S+ M G+T P G+RQG P SPYL+++C E L I+
Sbjct: 461 LSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEA 520
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
+ G ++ + FADD LF +A V++ I++ +L + ASGQ ++
Sbjct: 521 SVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLE 580
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KS I FS N I+ G+ + GKYLG+P + +R K F + ER+ +
Sbjct: 581 KSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLA 640
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTY 563
W SLS AG+ L K++ IP +
Sbjct: 641 GWKGRSLSLAGRITLTKAVLSSIPVH 666
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 187 bits (474), Expect = 2e-47
Identities = 116/276 (42%), Positives = 162/276 (58%), Gaps = 15/276 (5%)
Query: 240 LIKLL*KPIVSEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRL 299
LIKL+ + S G F L +TNI LI K +RP+ M P+SLCNV YK++SKVL++RL
Sbjct: 414 LIKLV-QNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRL 472
Query: 300 KQILHKCISDSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIK 359
K++L + IS++Q+AFV R I +N L E H ++ K+ +A+K D+SKA+DR++
Sbjct: 473 KRLLPELISETQSAFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVE 532
Query: 360 WSYLQAVMEK-----KWDSQMFGLTGS------CNV*P---IDPHCGIRQGGPFSPYLYI 405
WS+L+A+M K KW + S N P I P GIRQG P SP+L+I
Sbjct: 533 WSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFI 592
Query: 406 ICSEGLNSYIKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYT 465
+C+E L + +K E G I G +I R SPS + LLFADDS F KA + + +IL
Sbjct: 593 LCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCKADPLQGKEIIDILRL 652
Query: 466 YEAASGQAINYRKSSIAFSRNTDSIGHHNITHLLGV 501
Y ASGQ +N KSS+ F D+ + I LG+
Sbjct: 653 YGEASGQQLNPDKSSVMFGHEVDNSIRNTIKVSLGI 688
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 186 bits (471), Expect = 4e-47
Identities = 106/263 (40%), Positives = 156/263 (59%), Gaps = 15/263 (5%)
Query: 320 ILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK-----KWDSQ 374
I +N L E++H + K K + +A K D++KAFD+I+W +++A+M++ KW +
Sbjct: 2 ITDNILIAHELIHSLHTK-KLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 375 MFG---------LTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIH 425
+ L V I P GIRQG P SPYLY++C+EGL++ I+ +H
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLH 120
Query: 426 GTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSR 485
G + R P+I+ LLFA DS +F KA + E L N+L YE ASGQA+N++KS+I F +
Sbjct: 121 GFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGK 180
Query: 486 NTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLS 545
D ++ LLG+ ++ G+YLGLP V R+K + FSFI + + + + NW LS
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLS 240
Query: 546 RAGKEVLLKSIAQYIPTYSWAIF 568
AGKEVL+KSI IPTYS + F
Sbjct: 241 PAGKEVLIKSIVTAIPTYSMSCF 263
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 175 bits (444), Expect = 6e-44
Identities = 105/321 (32%), Positives = 168/321 (51%), Gaps = 15/321 (4%)
Query: 250 SEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISD 309
S GSFP D + LIAK+ +P+ + P+SLCNV++K ++KV+ RLK +++K I
Sbjct: 1016 SSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGP 1075
Query: 310 SQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKW--------- 360
+Q +F+P R +N + EV+H M+ K KG +G + LK D+ KA+DRI+W
Sbjct: 1076 AQTSFIPGRLSTDNIVVVQEVVHSMRRK-KGVKGWMLLKLDLEKAYDRIRWDLLEDTLKA 1134
Query: 361 -----SYLQAVMEKKWDSQMFGLTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYI 415
+++Q +M+ M L P G+RQG P SPYL+++C E L I
Sbjct: 1135 AGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLI 1194
Query: 416 KHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAIN 475
+ +I + P ++ + FADD LF +A + + +L+ +L + ASGQ ++
Sbjct: 1195 ESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVS 1254
Query: 476 YRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKN 535
KS I FS+N I+ G+ + GKYLG+P + +R K F + +R
Sbjct: 1255 LEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSR 1314
Query: 536 IQNWSAWSLSRAGKEVLLKSI 556
+ W LS AG+ L K++
Sbjct: 1315 LAGWKGRMLSFAGRLTLTKAV 1335
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 173 bits (438), Expect = 3e-43
Identities = 106/327 (32%), Positives = 164/327 (49%), Gaps = 32/327 (9%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
G P + D + L+AK+ +P+ + PVSLCNV++KI++K++ RLK ++ K I +Q
Sbjct: 294 GVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLIGPAQ 353
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYL-------- 363
A+F+P R +N + E +H M+ K KG++G + LK D+ KA+DRI+W +L
Sbjct: 354 ASFIPGRLSFDNIVVVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAG 412
Query: 364 ------QAVMEKKWDSQMFGLTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
+ +ME +M L P G+RQG P SPYL+++C E L I+
Sbjct: 413 LSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIET 472
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
G I +G P ++ + FADD LF EA+ Q ++
Sbjct: 473 AVGRGDWKSISISQGGPKVSHVCFADDLILF-----------------AEASVAQKVSLE 515
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KS I FS N IT G+ + GKYLG+P + +R K F + ER+ +
Sbjct: 516 KSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLS 575
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYS 564
W + SLS AG+ L K++ IP ++
Sbjct: 576 GWKSRSLSLAGRITLTKAVLMSIPIHT 602
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.342 0.149 0.502
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,997,820
Number of Sequences: 26719
Number of extensions: 515908
Number of successful extensions: 1777
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 93
length of query: 625
length of database: 11,318,596
effective HSP length: 105
effective length of query: 520
effective length of database: 8,513,101
effective search space: 4426812520
effective search space used: 4426812520
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 63 (28.9 bits)
Medicago: description of AC142224.5