BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142096.4 - phase: 0 /pseudo
(213 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31160 unknown protein 280 3e-76
At5g28490 putative protein 249 6e-67
At1g07090 unknown protein 249 8e-67
At3g04510 unknown protein 243 5e-65
At5g58500 putative protein 242 9e-65
At2g42610 unknown protein 226 7e-60
At1g78815 unknown protein 204 4e-53
At4g18610 putative protein 196 8e-51
At1g16910 hypothetical protein 183 7e-47
At3g23290 hypothetical protein 122 2e-28
At4g19500 resistence protein - like 61 5e-10
At1g12980 putative protein 36 0.013
At4g17330 G2484-1 protein 35 0.029
At1g09460 unknown protein 35 0.038
At3g30190 hypothetical protein 34 0.050
At5g58160 strong similarity to unknown protein (gb|AAD23008.1) 34 0.065
At3g26510 unknown protein 34 0.065
At3g09000 unknown protein 34 0.065
At2g15760 unknown protein 34 0.065
At1g01400 hypothetical protein 33 0.085
>At2g31160 unknown protein
Length = 219
Score = 280 bits (717), Expect = 3e-76
Identities = 140/172 (81%), Positives = 146/172 (84%), Gaps = 9/172 (5%)
Query: 25 ITNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNH 84
I+N SSS+T +T SSSS+ PS S SRYENQKRRDWNTFGQYLRNH
Sbjct: 23 ISNNSSSVTGATGGEATQPLSSSSS-----PSANS----SRYENQKRRDWNTFGQYLRNH 73
Query: 85 RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDAL 144
RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPA CPCPLRQAWGSLDAL
Sbjct: 74 RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDAL 133
Query: 145 IGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 196
IGRLRAAFEENGGKPE NPFGARAVRLYLREVRD Q+KARG+SYEKKKRKRP
Sbjct: 134 IGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185
>At5g28490 putative protein
Length = 190
Score = 249 bits (637), Expect = 6e-67
Identities = 121/155 (78%), Positives = 132/155 (85%), Gaps = 5/155 (3%)
Query: 53 SPPSTTSTTTPS--RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGK 110
+P S+T T PS RYENQKRRDWNTF QYLRNHRPPLSL CSGAHVLEFLRYLDQFGK
Sbjct: 11 NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70
Query: 111 TKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVR 170
TKVH C F+G PNPPA CPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71 TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130
Query: 171 LYLREVRDSQAKARGISYEKKKR---KRPPQPPPP 202
L+LREVRD QAKARG+SYEKK++ ++ PQ PP
Sbjct: 131 LFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPP 165
>At1g07090 unknown protein
Length = 196
Score = 249 bits (636), Expect = 8e-67
Identities = 113/146 (77%), Positives = 131/146 (89%), Gaps = 5/146 (3%)
Query: 52 TSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKT 111
+SPP+T PSRYE+QKRRDWNTF QYL+NH+PPL+LSRCSGAHV+EFL+YLDQFGKT
Sbjct: 23 SSPPAT-----PSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKT 77
Query: 112 KVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRL 171
KVH CP++GH PP+ C CPL+QAWGSLDALIGRLRAA+EENGG+P++NPF ARAVR+
Sbjct: 78 KVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRI 137
Query: 172 YLREVRDSQAKARGISYEKKKRKRPP 197
YLREVR+SQAKARGI YEKKKRKRPP
Sbjct: 138 YLREVRESQAKARGIPYEKKKRKRPP 163
>At3g04510 unknown protein
Length = 201
Score = 243 bits (620), Expect = 5e-65
Identities = 115/167 (68%), Positives = 135/167 (79%), Gaps = 8/167 (4%)
Query: 46 SSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYL 105
++S +T +P S +S + SRYENQKRRDWNTF QYLRNH PPLSL+ CSGAHVL+FLRYL
Sbjct: 14 NTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYL 73
Query: 106 DQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFG 165
DQFGKTKVH C F+G PNPPA CPCPLRQAWGSLDALIGRLRAA+EENGG PE +PFG
Sbjct: 74 DQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFG 133
Query: 166 ARAVRLYLREVRDSQAKARGISYEKKKRK--------RPPQPPPPPP 204
+R+VR++LREVRD QAK+RG+SYEKK+++ PQ PP P
Sbjct: 134 SRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLP 180
>At5g58500 putative protein
Length = 182
Score = 242 bits (618), Expect = 9e-65
Identities = 111/147 (75%), Positives = 130/147 (87%), Gaps = 1/147 (0%)
Query: 51 TTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGK 110
T + + +S+++PSRYE+QKRRDWNTF QYLRNH+PPL+LSRCSGAHVLEFL+YLDQFGK
Sbjct: 5 TAAKAAASSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGK 64
Query: 111 TKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEE-NGGKPEANPFGARAV 169
TKVH CPF+G PNPP+ C CPL+QAWGSLDALIGRLRAAFEE GG PE+NPF A+AV
Sbjct: 65 TKVHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAV 124
Query: 170 RLYLREVRDSQAKARGISYEKKKRKRP 196
R+YL+EVR +QAKARGI Y+KKKRKRP
Sbjct: 125 RIYLKEVRQTQAKARGIPYDKKKRKRP 151
>At2g42610 unknown protein
Length = 177
Score = 226 bits (576), Expect = 7e-60
Identities = 103/135 (76%), Positives = 116/135 (85%)
Query: 62 TPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFY 121
TPSRYE+QKRRDWNTFGQYL+N RPP+ +S CS HVL+FLRYLDQFGKTKVH C FY
Sbjct: 22 TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFY 81
Query: 122 GHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQA 181
G P PPA C CPLRQAWGSLDALIGRLRAA+EENGG PE NPF + A+R+YLREVR+ QA
Sbjct: 82 GQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQA 141
Query: 182 KARGISYEKKKRKRP 196
KARGI Y+KKK+K+P
Sbjct: 142 KARGIPYKKKKKKKP 156
>At1g78815 unknown protein
Length = 195
Score = 204 bits (518), Expect = 4e-53
Identities = 95/164 (57%), Positives = 116/164 (69%)
Query: 36 IPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSG 95
I S+ S P S + SRYE+QKRRDWNTF QYLRN +PP+ +S+C
Sbjct: 11 IAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGS 70
Query: 96 AHVLEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEEN 155
H+L+FL+YLDQFGKTKVH C F+G P C CPL+QAWGSLDALIGRLRAAFEEN
Sbjct: 71 NHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEEN 130
Query: 156 GGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQP 199
GG PE NPF +R++LREVRDSQAKARG+ Y+K+K+++ P
Sbjct: 131 GGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNP 174
>At4g18610 putative protein
Length = 191
Score = 196 bits (498), Expect = 8e-51
Identities = 95/152 (62%), Positives = 113/152 (73%), Gaps = 1/152 (0%)
Query: 45 SSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRY 104
SSSS P SRYE+QKRRDWNTF QYL++ PPL +S+ HVL FLRY
Sbjct: 17 SSSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRY 76
Query: 105 LDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEEN-GGKPEANP 163
LDQFGKTKVH C F+G P+PP C CPL+QAWGSLDALIGRLRAA+EE+ GG P+ NP
Sbjct: 77 LDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNP 136
Query: 164 FGARAVRLYLREVRDSQAKARGISYEKKKRKR 195
F ++R++LREVR+SQAKARGI Y KKKR++
Sbjct: 137 FANGSIRVHLREVRESQAKARGIPYRKKKRRK 168
>At1g16910 hypothetical protein
Length = 164
Score = 183 bits (464), Expect = 7e-47
Identities = 88/155 (56%), Positives = 105/155 (66%), Gaps = 5/155 (3%)
Query: 39 SSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHV 98
+ST + + PP T S RYE+QK RDWNTF QYL PP+ + C H+
Sbjct: 2 TSTNTRNKGKCIVEGPPPTLS-----RYESQKSRDWNTFCQYLMTKMPPVHVWECESNHI 56
Query: 99 LEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGK 158
L+FL+ DQFGKTKVH C F+G PP C CPL+QAWGSLDALIGRLRAA+EENGG
Sbjct: 57 LDFLQSRDQFGKTKVHIQGCVFFGQKEPPGECNCPLKQAWGSLDALIGRLRAAYEENGGL 116
Query: 159 PEANPFGARAVRLYLREVRDSQAKARGISYEKKKR 193
E NPF +R++LREVR SQAKARG+ Y+KKKR
Sbjct: 117 TEKNPFARGGIRIFLREVRGSQAKARGVLYKKKKR 151
>At3g23290 hypothetical protein
Length = 84
Score = 122 bits (305), Expect = 2e-28
Identities = 60/85 (70%), Positives = 72/85 (84%), Gaps = 2/85 (2%)
Query: 29 SSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPL 88
S + + I +++TT+ +SSS++++S S T+ SRYENQKRRDWNTFGQYLRNHRPPL
Sbjct: 2 SHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQL--SRYENQKRRDWNTFGQYLRNHRPPL 59
Query: 89 SLSRCSGAHVLEFLRYLDQFGKTKV 113
SLSRCSGAHVLEFLRYLDQFGKTKV
Sbjct: 60 SLSRCSGAHVLEFLRYLDQFGKTKV 84
>At4g19500 resistence protein - like
Length = 1239
Score = 60.8 bits (146), Expect = 5e-10
Identities = 42/142 (29%), Positives = 59/142 (40%), Gaps = 30/142 (21%)
Query: 37 PSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGA 96
P+S+ + P +TT DW +F ++LRN PPL+ +CS
Sbjct: 414 PTSNWKDTDDFDSGDIIPIIADKSTTIIPNRRHSNDDWCSFCEFLRNRIPPLNPFKCSAN 473
Query: 97 HVLEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENG 156
V++FLR RQ GS +AL+ RL + E G
Sbjct: 474 DVIDFLR------------------------------TRQVLGSTEALVDRLIFSSEAFG 503
Query: 157 GKPEANPFGARAVRLYLREVRD 178
KPE NPF ++AV YL+ RD
Sbjct: 504 IKPEENPFRSQAVTSYLKAARD 525
>At1g12980 putative protein
Length = 328
Score = 36.2 bits (82), Expect = 0.013
Identities = 30/91 (32%), Positives = 42/91 (45%), Gaps = 15/91 (16%)
Query: 3 SLQEFESSTNNKDMMNTNPMINI-TNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTT 61
+L+ F ST++ D NP+ T P++S P S SS T T + +STT
Sbjct: 4 ALRNFTESTHSPD---PNPLTKFFTEPTAS-----PVSRNRKLSSKDTTVTIAGAGSSTT 55
Query: 62 TPSRYENQKRRDWNTFGQYLRNHRPPLSLSR 92
RY +RR W G+Y R P+S R
Sbjct: 56 ---RYRGVRRRPW---GRYAAEIRDPMSKER 80
Score = 26.9 bits (58), Expect = 8.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 190 KKKRKRPPQPPPPPP 204
KK R PP PP PPP
Sbjct: 232 KKNRGVPPSPPTPPP 246
>At4g17330 G2484-1 protein
Length = 2037
Score = 35.0 bits (79), Expect = 0.029
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 11 TNNKDMMNTNPMINITNPSSSMTMTIPSSSTTSASSSSTATTSP 54
TN+K+ TNPMI +++P S++ ++ + ++S S AT P
Sbjct: 1032 TNSKESSGTNPMIPLSSPLWSLSTSVDTLQSSSVQRGSAATHQP 1075
>At1g09460 unknown protein
Length = 213
Score = 34.7 bits (78), Expect = 0.038
Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 4/66 (6%)
Query: 1 MNSLQEFESSTNNKDMMNTNPMINITNPSSSMTMTIPSSSTTSASSSSTATTSPPSTT-- 58
++ L S+T + D++N P + TNP+++ T T P + T + ++T PP TT
Sbjct: 15 LSLLSYCSSTTTHHDVLNP-PTVFPTNPTTTPTATFPPVTITPTNPATTVPIVPPVTTIP 73
Query: 59 -STTTP 63
T TP
Sbjct: 74 PPTLTP 79
>At3g30190 hypothetical protein
Length = 263
Score = 34.3 bits (77), Expect = 0.050
Identities = 21/66 (31%), Positives = 41/66 (61%)
Query: 1 MNSLQEFESSTNNKDMMNTNPMINITNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTST 60
MNS E + + + M + ++ SSS + + SSS++S+SSSS++++S S++S+
Sbjct: 4 MNSSFSHEVTIDRRHKMTKQCNGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSS 63
Query: 61 TTPSRY 66
++ S Y
Sbjct: 64 SSFSSY 69
Score = 32.7 bits (73), Expect = 0.15
Identities = 16/40 (40%), Positives = 31/40 (77%)
Query: 29 SSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYEN 68
SSS + + SSS++S+SSSS++++S ST+S+++ S + +
Sbjct: 29 SSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSS 68
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/43 (32%), Positives = 28/43 (64%)
Query: 38 SSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQY 80
SSS++S+SSSS++++S S++S+++ S ++F Y
Sbjct: 27 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSSY 69
Score = 28.5 bits (62), Expect = 2.7
Identities = 14/41 (34%), Positives = 31/41 (75%)
Query: 26 TNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRY 66
++ SSS + + SSS++S+SSSS+++++ S++S++ S +
Sbjct: 30 SSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSSYF 70
>At5g58160 strong similarity to unknown protein (gb|AAD23008.1)
Length = 1307
Score = 33.9 bits (76), Expect = 0.065
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 187 SYEKKKRKRPPQPPPPPPSNNATIT 211
S +K RPP PPPPPP ++T+T
Sbjct: 680 SDKKPALPRPPPPPPPPPMQHSTVT 704
>At3g26510 unknown protein
Length = 196
Score = 33.9 bits (76), Expect = 0.065
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 1 MNSLQEFE---SSTNNKDMMNTNPMINITNPSSSMT-MTIPSSSTTSASSSSTATTSPPS 56
+N ++E++ SS+ K + NP + S + +PSS+TTS+SS++++T+S P
Sbjct: 91 VNLIEEYDLVSSSSPMKIRVFLNPPKSAAGSKKSPPPLALPSSTTTSSSSTTSSTSSSPR 150
Query: 57 TTSTTTP 63
+ S + P
Sbjct: 151 SPSLSKP 157
>At3g09000 unknown protein
Length = 541
Score = 33.9 bits (76), Expect = 0.065
Identities = 24/64 (37%), Positives = 32/64 (49%), Gaps = 9/64 (14%)
Query: 2 NSLQEFESSTNNKDMMNTNPMINITNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTT 61
N ++ S NNK T+ SS + PSSS +S S+S AT + STT TT
Sbjct: 121 NCREDIVSGNNNKPQ---------TSSSSVAGLRRPSSSGSSRSTSRPATPTRRSTTPTT 171
Query: 62 TPSR 65
+ SR
Sbjct: 172 STSR 175
Score = 28.5 bits (62), Expect = 2.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 25 ITNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPS 64
+T +S+ + P+S T ++ +T +T+ P TT+T++ S
Sbjct: 177 VTTRASNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGS 216
Score = 28.5 bits (62), Expect = 2.7
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 26 TNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSR 65
T S+S + T S +T +A+ ++T+T +P +TT+++ +R
Sbjct: 179 TRASNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGSAR 218
Score = 26.9 bits (58), Expect = 8.0
Identities = 12/39 (30%), Positives = 25/39 (63%)
Query: 26 TNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPS 64
+ P+S T+T ++T++A+ +T T+S + ++T T S
Sbjct: 187 STPTSRATLTAARATTSTAAPRTTTTSSGSARSATPTRS 225
>At2g15760 unknown protein
Length = 315
Score = 33.9 bits (76), Expect = 0.065
Identities = 17/49 (34%), Positives = 29/49 (58%)
Query: 23 INITNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKR 71
+N + +SS +T PSS T ++ +A TSP +TS+ P +++Q R
Sbjct: 13 LNFDSTTSSPYITAPSSPTRFGNNFFSAPTSPSPSTSSNIPFDWDDQPR 61
>At1g01400 hypothetical protein
Length = 204
Score = 33.5 bits (75), Expect = 0.085
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 9 SSTNNKDMMNTNPMINITNPSS-----SMTMTIPSSSTTSASSSSTATTSPP------ST 57
S +++ +N + IN T P S S + +S+TT ASS S T P +T
Sbjct: 28 SPRRSEETLNQSTQINQTGPRSVLHLQSQESHLSNSTTTHASSPSVNVTPKPDLSSFSNT 87
Query: 58 TSTTTPSRYENQK----RRDWNTFGQYLRNHRPPLSLSRCSGA 96
T+T PS + +D + + R+ R P+ CSGA
Sbjct: 88 TATQEPSPSAGLQIRTIEKDRSPGSAFPRHKRLPVFDEVCSGA 130
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.313 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,734,976
Number of Sequences: 26719
Number of extensions: 269689
Number of successful extensions: 4539
Number of sequences better than 10.0: 269
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 3043
Number of HSP's gapped (non-prelim): 1035
length of query: 213
length of database: 11,318,596
effective HSP length: 95
effective length of query: 118
effective length of database: 8,780,291
effective search space: 1036074338
effective search space used: 1036074338
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC142096.4