BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141414.1 - phase: 0 
         (104 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g78400 similar to exopolygalacturonase precursor sp|Q00293|PG...    26  2.9
At5g53130 cyclic nucleotide-regulated ion channel (emb|CAA76178.1)     25  4.9
At4g33100 putative protein                                             25  4.9
At3g54460 RING finger -like protein                                    25  4.9
At2g32680 putative disease resistance protein                          25  4.9
At5g45230 disease resistance protein RPS4                              25  8.4

>At1g78400 similar to exopolygalacturonase precursor
           sp|Q00293|PGLX_ASPTU
          Length = 412

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 11/34 (32%), Positives = 16/34 (46%)

Query: 67  GTLDNCRGKWKAWTDCLMLKTKPKSQVEVGSYFL 100
           G  DN     KAW D    K  P+  +  G+++L
Sbjct: 46  GKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYL 79


>At5g53130 cyclic nucleotide-regulated ion channel (emb|CAA76178.1)
          Length = 716

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 22/89 (24%), Positives = 34/89 (37%), Gaps = 11/89 (12%)

Query: 7   TGFFSKEFIGCSNFQFVAVM-------SSEKEELSSTVKRKLSCFEHF----DALWFCYS 55
           TGF + E++G  +F    ++       SS    +S+   R L   E F    D L F  S
Sbjct: 541 TGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVAS 600

Query: 56  PVYQMKQYYRLGTLDNCRGKWKAWTDCLM 84
              ++       T      +WK W  C +
Sbjct: 601 QFRRLHSKQLRHTFRYYSQQWKTWAACFI 629


>At4g33100 putative protein
          Length = 92

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 29 EKEELSSTVKRKLSCFEHFDALWFCYSPVYQMKQYYRLGTLDNCRGKWKAWTDCL 83
          +K++ +S       C +  +A   C++  Y  K        + C  +WK + DCL
Sbjct: 5  KKKDSTSARSSTSPCADLRNAYHNCFNKWYSEKFVKGQWDKEECVAEWKKYRDCL 59


>At3g54460 RING finger -like protein
          Length = 1378

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 6   MTGFFSKEFIGCSNFQ---FVAVMSSEKEELSSTVKRKLSCFEHFDALWFCYSPVYQMKQ 62
           + GF++K   G  +     F +V+   K  +SSTVK+ L        +W    P+ ++ Q
Sbjct: 630 LQGFYTKGASGEESDNISFFTSVLREHKSSVSSTVKKAL--------IWLAKLPLEKLSQ 681

Query: 63  YYRLG 67
              +G
Sbjct: 682 METVG 686


>At2g32680 putative disease resistance protein
          Length = 890

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 8/27 (29%), Positives = 19/27 (69%)

Query: 6   MTGFFSKEFIGCSNFQFVAVMSSEKEE 32
           +TG   + F+ CS+ +F++V+++  E+
Sbjct: 564 LTGKLPRSFVNCSSLKFLSVINNRIED 590


>At5g45230 disease resistance protein RPS4
          Length = 1231

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 24/95 (25%), Positives = 38/95 (39%), Gaps = 13/95 (13%)

Query: 16  GCSNFQFVAVMSSEKEEL---SSTVKRKLSCFEHFDALWFCYSPVYQMKQYYRLGTLDNC 72
           GCS+FQ   V+S   E L    + +        +   L F       +K    L TL +C
Sbjct: 736 GCSSFQTFEVISEHLESLYLNGTEINGLPPAIGNLHRLIF-----LNLKDCKNLATLPDC 790

Query: 73  RGKWKAWTD-----CLMLKTKPKSQVEVGSYFLLI 102
            G+ K+  +     C  LK  P    ++ S  +L+
Sbjct: 791 LGELKSLQELKLSRCSKLKIFPDVTAKMESLLVLL 825


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.326    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,361,158
Number of Sequences: 26719
Number of extensions: 83140
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 11,318,596
effective HSP length: 80
effective length of query: 24
effective length of database: 9,181,076
effective search space: 220345824
effective search space used: 220345824
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)