BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141323.18 - phase: 0 
         (1638 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g20390 hypothetical protein                                       1047  0.0
At2g15410 putative retroelement pol polyprotein                       819  0.0
At3g31530 hypothetical protein                                        552  e-157
At1g37200 hypothetical protein                                        523  e-148
At2g13330 F14O4.9                                                     473  e-133
At2g11940 putative retroelement gag/pol polyprotein                   444  e-124
At2g14400 putative retroelement pol polyprotein                       367  e-101
At2g15100 putative retroelement pol polyprotein                       335  1e-91
At2g14380 putative retroelement pol polyprotein                       314  2e-85
At4g03800                                                             297  3e-80
At2g13230 pseudogene                                                  234  3e-61
At3g11970 hypothetical protein                                        219  1e-56
At1g36590 hypothetical protein                                        219  1e-56
At4g10580 putative reverse-transcriptase -like protein                201  4e-51
At2g10780 pseudogene                                                  201  4e-51
At2g04670 putative retroelement pol polyprotein                       201  4e-51
At2g14650 putative retroelement pol polyprotein                       195  2e-49
At1g35370 hypothetical protein                                        195  2e-49
At1g37060 Athila retroelment ORF 1, putative                          194  4e-49
At1g36830 hypothetical protein                                        192  1e-48

>At1g20390 hypothetical protein
          Length = 1791

 Score = 1047 bits (2707), Expect = 0.0
 Identities = 615/1678 (36%), Positives = 923/1678 (54%), Gaps = 123/1678 (7%)

Query: 38   LDEPEPQPFSTEIWNAPVPDNFKPPQLPTFDGRSDPSEHVTVFNTRMSVYGVA----DSL 93
            L+E +  PF+  I N  +    K  +L +++GR+DP E +T FN  ++   +     D+ 
Sbjct: 149  LEETQQTPFTRRITNVSIRGAQKI-KLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAG 207

Query: 94   KCKLLAGTLADAALRWYMSLPRFSIVGYQDLTKKFTQQFSGTRHRKVLSTSLFNVRQGPN 153
            +C++    L   A  W+  L   SI  +  LT  F + ++     +  +  L+++ QG  
Sbjct: 208  RCQIFIEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAK 267

Query: 154  ESLREYLARFNDSTIKVSNPNQEVFVGAFQNGLRAGQFNESLAQKPADSMEEIIARAECY 213
            ESLR ++ RF      ++ P++   V          +F + +      ++E+ + RA  +
Sbjct: 268  ESLRSFVDRFKLVVTNITVPDEAAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRF 327

Query: 214  VKGEESNAEKRARDVKEKGSSGGERRNHYVPPNRDRGTFKK-PYERNQPRYVPEHFTPLN 272
            ++ EE           EK     +  +   P  +D    K  P + N+PR   +      
Sbjct: 328  IELEE-----------EKLILARKHNSTKTPACKDAVVIKVGPDDSNEPRQHLDRNPSAG 376

Query: 273  TRPEKILKEVFESKIIPPPPFNRSKTMGQDKNAWCKYHLIEGHNTDDCVHLKR------- 325
             +P   L         P   + R          +C+YH    H+T++C  L+        
Sbjct: 377  RKPTSFLVSTETPDAKPWNKYIRDADSPAAGPMYCEYHKSRAHSTENCRFLQGLLMAKYK 436

Query: 326  ------EIEKLLLNGK--LRGYAKEKHHSERREDKPNPEPK------------------- 358
                  E ++  +N K   R     + +   +   P P  +                   
Sbjct: 437  SGGITIECDRPPINNKNQRRNETTARQYLNDQTKPPTPAEQGIITSADDPAAKRQRNGKA 496

Query: 359  --------HTLHTISGGFAGGGESSNLRKKYVRQVMLLGDSPSS------PKKYPHVTFS 404
                      +H I GG     +S    K+Y ++  ++   PSS      P +   ++F+
Sbjct: 497  IAAEPVVVRQVHVIMGGLQNCSDSVRSIKQYRKKAEMVVAWPSSTSTTRNPNQSAPISFT 556

Query: 405  SEDF-GRVLPHDDDPLVISVQLFNWEIKRVLIDTGSSADVLYFDAFSKMGLSEEQLQPFN 463
              D  G   PH+D PLV+ + + +  + RVLIDTGSS D+++ D  + M +++ Q++P +
Sbjct: 557  DVDLEGLDTPHND-PLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPVS 615

Query: 464  GTLSGFTGEKVHVRGYVTLKTIFGTGDQQTSIKVRYLVINSPSSYNVIIGRPSINLLDAF 523
              L+GF G+ V   G + L    G         V+++VI  P+ YNVI+G P I+ + A 
Sbjct: 616  KPLAGFDGDFVMTIGTIKLPIFVGG----LIAWVKFVVIGKPAVYNVILGTPWIHQMQAI 671

Query: 524  VSTKHLLMKYPLDSGRVGVVHGDQKIARECYHASLRLKKHKEFEVQVIDLDPREDFPQER 583
             ST H  +K+P  +G   +     +  +E    S   ++ +    +++++D  +      
Sbjct: 672  PSTYHQCVKFPTHNGIFTL-----RAPKEAKTPSRSYEESELCRTEMVNIDESD------ 720

Query: 584  IEPIEEVKDVVIGPLPHQITKIGTSLSGLEEEILVQLLRENVDLFAWAPSDMPGIDIGVA 643
                           P +   +G  +S      L+ LL+ N   FAW+  DM GID  + 
Sbjct: 721  ---------------PTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAIT 765

Query: 644  CHHLAVRTSVKPVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKAS 703
             H L V  + KPV Q++RK+G E+ +AV+EEV+KL +A  I E+KYP WLAN V+VKK +
Sbjct: 766  AHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKN 825

Query: 704  GKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPK 763
            GKWR+CVDYTDLN ACPKD YPLP ID L++  SG   LSFMDA+SGYNQI M   D  K
Sbjct: 826  GKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEK 885

Query: 764  TAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHS 823
            T+F+T++  Y Y+VMSFGL+NAGAT+QR ++ + ++QIGR +EVYIDD++VK+ + + H 
Sbjct: 886  TSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHV 945

Query: 824  VDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNI 883
              L + F  +  + M+LNPTKCTFGV +G+FLG+++TK+GIEANP + +AI+ + +P N 
Sbjct: 946  EHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNA 1005

Query: 884  REVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPIL 943
            REVQ+LTGR+AAL+RF+S + DK   F+  +K++ +F+W+++ +EAF K+K +L+TPPIL
Sbjct: 1006 REVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPIL 1065

Query: 944  HRPTKGAGLFLYLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVI 1003
             +P  G  L+LY++VS++A+SSVLV E    ++PI++ S+ L  AE RY  IEK ALAV+
Sbjct: 1066 VKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVV 1125

Query: 1004 ITARKLRPYFQSHKVVIRTNYPVKQILGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQV 1063
             +ARKLRPYFQSH + + T+ P++  L     +GRM  W+VELSEYDI F PR  +KSQV
Sbjct: 1126 TSARKLRPYFQSHTIAVLTDQPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQV 1185

Query: 1064 LADFVVEFTSPIQEAVPHV-------WLLSVDGSSNIKGSGAGIILEGPGDLLIEQSLKF 1116
            LADF++E   P+Q A   V       W L VDGSS+ +GSG GI L  P   ++EQS + 
Sbjct: 1186 LADFLIEL--PLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRL 1243

Query: 1117 DFKASNNQAEYEALIAGMLLAQEMGAKNLRARSDSQLMTNQISGEYQTKDQQLSKYLARV 1176
             F A+NN AEYE LIAG+ LA  M    + A +DSQL+  Q+SGEY+ K++++  YL  V
Sbjct: 1244 RFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIV 1303

Query: 1177 RKLAGDFQFFEAIYVPRESNSRADLLAKLASTKKPGNNRTVIQEVISAPSTDEKAVFEL- 1235
            + +  DF+ F+   +PR  N+ AD LA LA T      R +  E I  PS D     E+ 
Sbjct: 1304 QLMTKDFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIPVESIDKPSIDSTDAVEIV 1363

Query: 1236 ----------NQEPEGWMTPLLKFLTGSFVAKNDEYAQLVRRRATKFVVIAGKLYKRGRA 1285
                        +P  W   +  +L+   +  +   A+ +R +A K+ ++   L K    
Sbjct: 1364 NTIRSSNAPDPADPTDWRVEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAF 1423

Query: 1286 SPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDCCEFVKKCDK 1345
              +L CL   E   ++ E HEG  G+H GGR+LA KL + G+YWP M  DC  F  KC++
Sbjct: 1424 GAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQ 1483

Query: 1346 CQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPGQLKFLIVDVDYFTKWVEAEA 1405
            CQR +   + P   L +  +P+PF +W +DIVGP P A  Q +F++V  DYFTKWVEAE+
Sbjct: 1484 CQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP-ASRQKRFILVMTDYFTKWVEAES 1542

Query: 1406 VSKITAERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFCKQLGIETKFVSVIHPQ 1465
             + I A  V  F WK IIC  GLP  I+TDNG+QF S    NFC    I     +  +PQ
Sbjct: 1543 YATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQ 1602

Query: 1466 ANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETPFTMVYGADAM 1525
             NGQAE+ NK I++ +KK+L++ KG WA++L  VLWSY TTP S T +TPF   YG +AM
Sbjct: 1603 GNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAM 1662

Query: 1526 LPVEIDTPTWRREHF--SEESNEVGIRCTMDMIDEVREAAHIREFAAKQRAARRYNSKVI 1583
             P E+   + RR     + E N+  +   +D ++E+R AA  R    +  AA+ YN KV 
Sbjct: 1663 APAEVGYSSLRRSMMVKNPELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVH 1722

Query: 1584 PRSMKEGDLVLKQV---VAPTRIGKLLPSWKGPYRVKEKLQHGAYKLEELSGNPVPRT 1638
             R    GDLVL++V    A    GKL  +W+G Y+V + ++ G Y+L  +SG  VPRT
Sbjct: 1723 NRHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRT 1780


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  819 bits (2116), Expect = 0.0
 Identities = 449/1098 (40%), Positives = 646/1098 (57%), Gaps = 128/1098 (11%)

Query: 610  SGLEEEILVQLLRENVDLFAWAPSDMPGIDIGVACHHLAVRTSVKPVVQRKRKMGEEKRK 669
            S L+ E LV  LR+N   FAW+  DMPGID  V CH L V  + KP+ Q++RK+G ++ K
Sbjct: 738  SELQNE-LVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTK 796

Query: 670  AVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSI 729
             V+EEVKKL +A  I E++YP WL N V+VKK +GKWR+C+D+TDLN ACPKD +PLP I
Sbjct: 797  DVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHI 856

Query: 730  DHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATF 789
            D L++  +G + LSFMDA+SGYNQI M   D  KT F+T+Q  Y Y+VM FGL+NAGAT+
Sbjct: 857  DRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATY 916

Query: 790  QRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGV 849
             R ++ +F++Q+  ++EVYIDD++VK+   + H   L++ FQ + +++M+LNP+KCTFGV
Sbjct: 917  PRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGV 976

Query: 850  QAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFA 909
             +G+FLG+L+T++GIEANP +  AII++ +P N REVQ+L GR+AAL+RF+S + DK   
Sbjct: 977  TSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLP 1036

Query: 910  FFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVE 969
            F+  ++  + FEW+++C+E                    G  L+LY++VS +A+S VLV 
Sbjct: 1037 FYQLLRANKRFEWDEKCEE--------------------GETLYLYIAVSTSAVSGVLVR 1076

Query: 970  ESDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPYFQSHKVVIRTNYPVKQI 1029
            E    + PI++VS+ L GAELRY  +EKLA AV+I+ARKLRPYF+S+ V + TN P++ I
Sbjct: 1077 EDRGEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTNQPLRTI 1136

Query: 1030 LGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQVLADFVVEFTSPIQEAVPHVWLLSVDG 1089
            L     +GR+  W+VELSEYDI +  R   KS          T P + ++P      VD 
Sbjct: 1137 LHSPSQSGRLAKWAVELSEYDIAYKNRTCAKSHRAP------TRPYRRSIP---CRKVDL 1187

Query: 1090 SSNIKGSGAGIILEGPGDLLIEQSLKFDFKASNNQAEYEALIAGMLLAQEMGAKNLRARS 1149
            +                           F ASNN+AEYEALIAG+ LA  +  K ++A  
Sbjct: 1188 AR--------------------------FPASNNEAEYEALIAGLRLAHGIEVKKIQAYC 1221

Query: 1150 DSQLMTNQISGEYQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLASTK 1209
            DSQL+ +Q SG Y+ K++++  YL  VR+L+ +F+ FE   +PR  N+ AD LA LAST 
Sbjct: 1222 DSQLVASQFSGNYEAKNERMDAYLKVVRELSYNFEVFELTKIPRSDNAPADALAVLASTS 1281

Query: 1210 KPGNNRTV-----------IQEVISAPSTDEKAVFELNQE-------------------- 1238
             P   R +           IQ  I+ PS  E  V +L  E                    
Sbjct: 1282 DPDLRRVIPVECIDVPSIKIQGTITKPS--EYTVIDLTAEQLSIVMVILPPATDRSEDAG 1339

Query: 1239 PEG---------------------------------WMTPLLKFLTGSFVAKNDEYAQLV 1265
            P G                                 W+  +  ++    V K+   A+ +
Sbjct: 1340 PSGNLVCSSDPGQSSGCDRSDDSNRSADSDSPASTNWIEEIRSYIADRIVPKDKWAARRL 1399

Query: 1266 RRRATKFVVIAGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRA 1325
            R R+ ++ +    L +      LL CL + E + V+ E+HEG  G+H GGR+LA K+ + 
Sbjct: 1400 RARSAQYTLPHEHLLRWSATGVLLSCLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKH 1459

Query: 1326 GYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPG 1385
            G YWP M  DC +FV +C+KCQ  +   + P+  L +   P+PF +W +DI+ PFP A  
Sbjct: 1460 GQYWPTMNADCEKFVARCEKCQGHAPFIHIPSEVLQTAMPPYPFMRWAMDIIRPFP-ASR 1518

Query: 1386 QLKFLIVDVDYFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKV 1445
            Q K+++V  DYFTKW EAE+ ++I ++ V  F WK IICH GLP  IVTDNGTQF S + 
Sbjct: 1519 QKKYILVMTDYFTKWFEAESYARIQSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQF 1578

Query: 1446 VNFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHT 1505
              FC +  I     +  +PQ NGQAE+ NK I++ +KK+L++ KG WA++L  VLWSY T
Sbjct: 1579 EGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRT 1638

Query: 1506 TPHSTTGETPFTMVYGADAMLPVEIDTPTWRREHFSEES--NEVGIRCTMDMIDEVREAA 1563
            TP  +T  TPF++ YG +A+ P E   PT RR     +   N+  +   +D ++E R+ A
Sbjct: 1639 TPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDTLEEQRDQA 1698

Query: 1564 HIREFAAKQRAARRYNSKVIPRSMKEGDLVLKQVVAPT---RIGKLLPSWKGPYRVKEKL 1620
             +R    +Q AA+ YN KV  R   EGDLVL++V   T     GKL   W+GPY + + +
Sbjct: 1699 LLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVV 1758

Query: 1621 QHGAYKLEELSGNPVPRT 1638
            + G Y+L  + G P+PR+
Sbjct: 1759 KPGVYELLTMDGTPIPRS 1776



 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 113/503 (22%), Positives = 197/503 (38%), Gaps = 59/503 (11%)

Query: 38  LDEPEPQPFSTEIWNAPVPDNFKPPQLPTFDGRSDPSEHVTVFNTRMSVYGVADSLK--- 94
           L+E +  PF++ I +  +  +    +L  ++G  DP   +T  +  +     +D  +   
Sbjct: 230 LEETQRSPFTSCISDVRIR-HISKIKLANYEGLVDPRPFLTSVSIAIGRAHFSDEDRDAG 288

Query: 95  -CKLLAGTLADAALRWYMSLPRFSIVGYQDLTKKFTQQFSGTRHRKVLSTSLFNVRQGPN 153
            C+L    L+ AAL W+  L   SI     LT  F + +     +   +  L+ + Q   
Sbjct: 289 SCQLFVKHLSGAALTWFSRLEANSIDSVHALTTSFLKNYGVFMEKGASNVDLWTMAQTAK 348

Query: 154 ESLREYLARFNDSTIKVSNPNQEVFVGAFQNGLRAGQFNESLAQ-KP---ADSMEEIIAR 209
           ESLR ++ RF +    V+ P+ +  + A +N L  G  +      KP     S +  IA+
Sbjct: 349 ESLRSFIGRFKEIVTSVATPD-DAAIAALRNALWHGDSSRCTTLCKPFHRQGSAKAPIAK 407

Query: 210 AECYVKGEESNAEKRARDVKEKGSSGGERRNHYVPPNRDRGTFKKPYER---------NQ 260
            +      ES     A   KE+    G   ++YV     R    KP+ +         +Q
Sbjct: 408 EKPKEGHHESRQHYDADYAKEEKLKKGT--SYYVGDTAPRSD--KPWNKWNRSADAKGDQ 463

Query: 261 PRY----VPEHFTPLNTRPEKILKEVFESKIIPPPPFNRSKTMGQDKNAWCKYHLIEGHN 316
             Y    +P H T    + + +L   F+   +   P  R        N   +    +  N
Sbjct: 464 KYYEFHKIPGHSTDECRQLQTLLLTKFKKGDLDIEPDRRRTGTNDRDNTHRRVENTDRDN 523

Query: 317 TDDCVH---LKREIEKLLLNGKLRGYAKEKHHSERREDKPNPEPKHTLHTISGGFAGGGE 373
            DD        R  E++  + + R    +++H   R+ +  P  K   + I GG     +
Sbjct: 524 QDDKRRQDETDRRAERIHDDDR-RAEPHKRNHDAPRQFEDEPASKRRRNMIMGGLTACRD 582

Query: 374 SSNLRKKYVR----QVMLLGDSPSSPKKYPHVTFSSEDFGRVLPHDDDPLVISVQLFNWE 429
           S    K Y R    Q   +  + S+ +    +TFS  D      H +DPLV+ +++    
Sbjct: 583 SVRSIKSYRRQGEKQRAWIEKNTSAVECNEPITFSEADIALPGSH-NDPLVVELKIGENV 641

Query: 430 IKRVLIDTGSSADVLYFDAFSKMGLSEEQLQPFNGTLSGFTGEKVHVRGYVTLKTIFGTG 489
           + ++ ID  S  D               ++QP    L+GF G+ +   G +TL    G  
Sbjct: 642 LLQLEIDVRSFQD---------------KVQP----LTGFDGDTIMTVGTITLPIYVG-- 680

Query: 490 DQQTSIKVRYLVINSPSSYNVII 512
              T     + V++ P  YNVI+
Sbjct: 681 --GTVSWFEFAVVDKPIIYNVIL 701


>At3g31530 hypothetical protein
          Length = 831

 Score =  552 bits (1422), Expect = e-157
 Identities = 317/835 (37%), Positives = 482/835 (56%), Gaps = 102/835 (12%)

Query: 743  SFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIG 802
            S+  +++ +  + M+P D  KTAF T Q  + YRVM FGL+NAGAT++R ++ IF+ QIG
Sbjct: 83   SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142

Query: 803  RNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKK 862
            + +EVYIDD++VK+  ++ H   L+E F+Q+  ++++LNP KC FGV++G          
Sbjct: 143  KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRSG---------- 192

Query: 863  GIEANPDKCQAIINMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEW 922
             IEANP + +A++ M +P N REVQ LTGR+AAL+RF+S + +K  AF+  +++ ++FEW
Sbjct: 193  -IEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251

Query: 923  NQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEESDEREKPIYFVS 982
               C+EAF ++K++L TPPIL +P  G   +LY++VS+ A+S  LV E    +K I++VS
Sbjct: 252  TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQKLIFYVS 311

Query: 983  RVLKGAELRYQKIEKLALAVIITARKLRPYFQSHKVVIRTNYPVKQILGKLDLAGRMLSW 1042
            +    AE RY ++EKLALAV+++A+KLRPYFQSH +++  + P++ IL     +GR+  W
Sbjct: 312  QTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSMPLRVILHSPSQSGRLAKW 371

Query: 1043 SVELSEYDIQFAPRNNIKSQVLADFVVEFTSPIQEA----VPHVWLLSVDGSSNIKGSGA 1098
            ++ELSEYDI++  +   KSQVLADF+VE   P +EA    +   WLL VDGSS+ +GSG 
Sbjct: 372  TIELSEYDIEYQNKTCAKSQVLADFIVEL--PTKEARENPLDTTWLLHVDGSSSKQGSGV 429

Query: 1099 GIILEGPGDLLIEQSLKFDFKASNNQAEYEALIAGMLLAQEMGAKNLRARSDSQLMTNQI 1158
            GI L  P             +A+NN AEYEAL+AG+ LA  +     RA  DSQL+ NQ 
Sbjct: 430  GIRLTSPTG-----------EATNNVAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQF 478

Query: 1159 SGEYQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLASTKKPGNNRTVI 1218
            +GEY T+D+++  YL  V+ LA +F  FE   +PR  N+ AD LA LAST      R + 
Sbjct: 479  NGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAALASTSDTSLKRVIP 538

Query: 1219 QEVISAPSTD---EKAVFEL-----NQEPEG----WMTPLLKFLTGSFVAKNDEYAQLVR 1266
             E I  PS +   E+ V  +       +P+     WM P++ +++   +  +   A+ ++
Sbjct: 539  VEFIEKPSIELGKEEHVLPIQISADQDDPDDCNSEWMEPIISYISEGKLPSDKWKARKLK 598

Query: 1267 RRATKFVVIAGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRAG 1326
             +A +FV++  KLYK   + PL+ C+       ++ E+H    GSH              
Sbjct: 599  AQAARFVLVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHS---GSH-------------- 641

Query: 1327 YYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPGQ 1386
                                   +   + PA  L+S+ SP+PF +W +DI+GP   +  Q
Sbjct: 642  -----------------------APTIHQPAELLSSIASPYPFMRWSMDIIGPMHPSK-Q 677

Query: 1387 LKFLIVDVDYFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVV 1446
             K ++V  DYF+KW+EAE+ + I   +V  F  K I+C  G+P  IVTDNG+QF S++  
Sbjct: 678  KKLVLVLTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQ 737

Query: 1447 NFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTT 1506
             FC + GI     +  +PQ NGQAE+AN                    +L  VLW + TT
Sbjct: 738  GFCDKWGIRLSKSTPRYPQGNGQAEAAN--------------------ELEGVLWLHRTT 777

Query: 1507 PHSTTGETPFTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDMIDEVRE 1561
            P   T ETPF  +YG + ++P E+  P+ RR   S E++    +  +D +D + E
Sbjct: 778  PRRATRETPFASIYGTECVIPAEMIVPSLRRS-LSPENDPDNTQTPLDELDLIDE 831



 Score = 37.0 bits (84), Expect = 0.094
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 497 VRYLVINSPSSYNVIIGRPSINLLDAFVSTKHLLMKYP 534
           V + + + P+ YN IIG P +N   A  ST HL +K+P
Sbjct: 19  VDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKFP 56


>At1g37200 hypothetical protein
          Length = 1564

 Score =  523 bits (1346), Expect = e-148
 Identities = 398/1417 (28%), Positives = 646/1417 (45%), Gaps = 242/1417 (17%)

Query: 128  FTQQFSGTRHRKVLSTSLFNVRQGPNESLREYLARFNDSTIKVSNPNQEVFVGAFQNGLR 187
            F +Q S    ++     L+++    NES R Y+ +F     K++N N+EV + A +NGL 
Sbjct: 176  FLKQDSVLIEQRTSEADLWSLTLLQNESHRSYVEKFKAIKSKIANLNEEVAIAALRNGLW 235

Query: 188  -AGQFNESLAQKPADSMEEIIARAECYVKGEESNAEKRARDVKEKGSSGGERRNHYVPPN 246
             + +F E L  +   S+++ + +A  + KGEE  A    +                    
Sbjct: 236  FSSRFREELTVRQPISLDDALHKALHFAKGEEELAVLALK-------------------- 275

Query: 247  RDRGTFKKPYERNQPRYVPEHFTPLN-TRPEKILKEVFESKIIPPPPFNRSKTMGQDKNA 305
                 FK+   +N P  +   F   N T+ +  L  + E+     P  +  K        
Sbjct: 276  -----FKESKTQNAPLAIKTPFKKENQTQGQHTLFAIEEAAEDESPELDLGK-------- 322

Query: 306  WCKYHLIEGHNTDDCVHLKREIEKLLL-NGKLRGYAKEKHHS---ERREDKPNPEPKHTL 361
            +CKYH   GH+T++C    R ++KL+   GK +  +  K  +   + +E++  P+ K   
Sbjct: 323  YCKYHNKRGHSTEEC----RAVKKLIAAGGKTKKGSNPKVETPPPDEQEEEQTPKQKKRE 378

Query: 362  HTISGGFAGGGESSNLRKKYVRQVML-------LGDSPSSPKKYPHVT----------FS 404
             T+ GG          R++ +  V          G S ++P   PH            F 
Sbjct: 379  RTLEGG----DSPPPARRERIDLVFTELDLGGKTGRSVTTPPSAPHKKNMRFPLRLSKFC 434

Query: 405  SEDFGRVLPHDDDPLVISVQLFNWEIKRVLI-----DTGSSADVLYFDAFSKMGLSEEQL 459
                  + P   D ++   QL N  I  +       D+ +    L      K+ L E + 
Sbjct: 435  RSATEHLSPKRIDFIMGGSQLCNDSINSIKTHQRKADSYTKGKSLMMGPDHKITLWESET 494

Query: 460  QPFNGTLSGFTGEKVHVRGYVTLKTIFGTGDQQTSIKVRYLVINSPSSYNVIIGRPSINL 519
               +         ++ V  Y   + +  TG           V  +P  +N I+GRP ++ 
Sbjct: 495  TDLDKPHDDAIVIRIDVGNYKLSRIMIDTGSS---------VDKAP--FNAILGRPWLHA 543

Query: 520  LDAFVSTKHLLMKYPLDSGRVGVVHGDQKIARECYHASLRLKKHKEFEVQVID------- 572
            + A  ST H  +K+P + G + V++G Q+ +R CY  S  L K  E  V +I+       
Sbjct: 544  MKAVPSTYHQCIKFPSEKG-IAVIYGSQRSSRRCYMGSYELIKKAELVVLMIEDKLAEMK 602

Query: 573  ----LDPREDFPQERIEPIEEVKDVVIGPL-PHQITKIGTSLSGLEEEILVQLLRENVDL 627
                 DP +  PQ+       +  V I    P Q   +G  L     E  +  L+EN D 
Sbjct: 603  TVRSSDPSQCGPQK-----SSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDS 657

Query: 628  FAWAPSDMPGIDIGVACHHLAVRTSVKPVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEI 687
            FAW+ +++ GI + V  H L V  + +P+ Q++RK+G E+ KAV +EV +L +   I E+
Sbjct: 658  FAWSSANLQGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREV 717

Query: 688  KYPTWLANTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDA 747
            KYP WLAN V+VK  +GKWR+C+D+ DLN ACPKD +PLP ID L+   +G++ LSFMDA
Sbjct: 718  KYPDWLANPVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDA 777

Query: 748  YSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEV 807
            +SGYNQI M P D  KTAF+T+     Y+VM FGL+N GAT+QR ++ +F++Q+G+ +E+
Sbjct: 778  FSGYNQILMRPDDQEKTAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMEL 833

Query: 808  YIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEAN 867
            YIDD++VK++ ++ H   L+E F+ + KF M+LNP KC+FGV +G+FLG+L+T++GIEAN
Sbjct: 834  YIDDMLVKSAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEAN 893

Query: 868  PDKCQAIINMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECD 927
            P +  A I+M +P   R+      +           G K   + +      E  +     
Sbjct: 894  PKQIAAFIDMPSPKMARDRPYRRPQQVIYRAPPDHEGQKPIYYVSKTLIDAETHYRAMEK 953

Query: 928  EAFG------KIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEESDEREKPIYFV 981
             A        K++Q+L + PI+   ++     L+ +   + L+   +E S   E  I + 
Sbjct: 954  LALAVVMSARKLRQYLQSHPIVVMTSQPIRTILHSTTQSSRLAKWAIELS---EYDIEYR 1010

Query: 982  SRVLKGAELRYQKIEKLALAVIITARKLRPYFQSHKVVIRTNYPVKQILGKLDLAGRMLS 1041
            +R                               S K  +  ++ ++  L  LD       
Sbjct: 1011 TRT------------------------------SFKAQVLADFVIELPLADLDGTNSNKK 1040

Query: 1042 WSVELSEYDIQFAPRNNIKSQVLADFVVEFTSPIQEAVPHVWLLSVDGSSNIKGSGAGII 1101
            W + +          +   ++  +   ++ TSP  E +   + L  + S+N         
Sbjct: 1041 WLLHV----------DGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNN--------- 1081

Query: 1102 LEGPGDLLIEQSLKFDFKASNNQAEYEALIAGMLLAQEMGAKNLRARSDSQLMTNQISGE 1161
             E   + LI+                     G+ LAQ M  +++ A SDSQL+T+Q  GE
Sbjct: 1082 -ESEYEALID---------------------GIKLAQGMRIRDIHAHSDSQLVTSQFHGE 1119

Query: 1162 YQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLASTKKPGNNRTVIQEV 1221
            Y+ KD+++  YL  V+ L   F+ FE   +PR  N+  D LA LAST  P   R +  E 
Sbjct: 1120 YEAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIPVEG 1179

Query: 1222 ISAPSTD----------------------------------------EKAVFE-----LN 1236
            I  PS D                                        E+A         +
Sbjct: 1180 IEHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLAS 1239

Query: 1237 QEPE---GWMTPLLKFLTGSFVAKNDEYAQLVRRRATKFVVIAGKLYKRGRASPLLRCLG 1293
             EPE    W  P++ ++       +    + ++ ++ ++ ++ G+L KR  A P + C  
Sbjct: 1240 YEPEPYNDWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTY 1299

Query: 1294 EGETELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKK 1353
              +T+ ++  +HEG CGSH  GR+L   +L           DC     +CDKCQR +   
Sbjct: 1300 GQQTKDLMKSMHEGQCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTL 1349

Query: 1354 NAPANELTSVFSPWPFHKWGVDIVGPFPQAPG--QLKFLIVDVDYFTKWVEAEAVSKITA 1411
            + P  E++S+ SP+PF KW +D+V P   + G  +LK L+V  DY TKW+E +A  ++T 
Sbjct: 1350 HQPPEEMSSISSPYPFMKWSMDVVRPMEASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTE 1409

Query: 1412 ERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNF 1448
            ++V  F  + I+   G+P  IVTDNG      K  +F
Sbjct: 1410 KQVEVFLLENIVYRHGIPYEIVTDNGLTSPREKSKHF 1446



 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 1552 TMDMIDEVREAAHIREFAAKQRAARRYNSKVIPRSMKEGDLVLKQVVAPTR---IGKLLP 1608
            T D IDE R+ A I+    +Q A R YNS +  R  + G+LVL++V + TR    GKL  
Sbjct: 1463 TRDFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGT 1522

Query: 1609 SWKGPYRVKEKLQHGAYKLEELSGNPVP 1636
            +W+GPYR+ E ++ G YKL ++  N VP
Sbjct: 1523 NWEGPYRITEVVRDGIYKLVKVF-NGVP 1549


>At2g13330 F14O4.9
          Length = 889

 Score =  473 bits (1216), Expect = e-133
 Identities = 247/540 (45%), Positives = 353/540 (64%), Gaps = 33/540 (6%)

Query: 703  SGKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAP 762
            +GKWR+C+D+ DLN ACPKD +PLP ID L++    ++ LSFMDA+ GYNQI M      
Sbjct: 291  NGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDGQE 350

Query: 763  KTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSH 822
            KTAF+T++  Y+Y+VM FGL+NAG T+QR ++ +F +Q+G+ +EVYIDD++VK++ ++ H
Sbjct: 351  KTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEKDH 410

Query: 823  SVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCN 882
               L+E F+ + KF M+LNP KC+F VQ+ +FL +L+T++GIEANP +  A I M +P  
Sbjct: 411  VPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSPKM 470

Query: 883  IREVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPI 942
             REVQ+LTGR+ AL+ F+S + +K   F+  ++K +EF+WN++C++AF ++K +LT PPI
Sbjct: 471  AREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEPPI 530

Query: 943  LHRPTKGAGLFLYLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAV 1002
            L +P KG  L+LY +                R+K              R   +EKLAL V
Sbjct: 531  LAKPEKGEPLYLYTN----------------RDK--------------RCPAMEKLALTV 560

Query: 1003 IITARKLRPYFQSHKVVIRTNYPVKQILGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQ 1062
            +++ RKLR YFQSH +V+ T+ P++ IL  L  +GR+  W++EL EYDI++  R ++K+Q
Sbjct: 561  VMSVRKLRLYFQSHPIVVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRTSLKAQ 620

Query: 1063 VLADFVVEFTSPIQEAV--PHVWLLSVDGSSNIKGSGAGIILEGPGDLLIEQSLKFDFKA 1120
            VLADFV++      +       WLL VDGSSN +GSG GI L  P   +IEQSL+  F A
Sbjct: 621  VLADFVIKLPLADLDGTNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNA 680

Query: 1121 SNNQAEYEALIAGMLLAQEMGAKNLRARSDSQLMTNQISGEYQTKDQQLSKYLARVRKLA 1180
            SNN++EYEALIAG+ LAQE G + + A SDSQL+T+Q  GEY+ KD+++  YL  V+ LA
Sbjct: 681  SNNESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLA 740

Query: 1181 GDFQFFEAIYVPRESNSRADLLAKLASTKKPGNNRTVIQEVISAPSTDEKAVFELNQEPE 1240
              F+ F+   +PR  N+ AD LA LAST  P   R +  E I   S D   V     EPE
Sbjct: 741  QQFESFKLTRIPRGENTSADTLAALASTSDPFVKRIIPVEGIEHTSID-LTVKHAGMEPE 799



 Score =  118 bits (296), Expect = 2e-26
 Identities = 77/235 (32%), Positives = 126/235 (52%), Gaps = 13/235 (5%)

Query: 413 PHDDDPLVISVQLFNWEIKRVLIDTGSSADVLYFDAFSKMGLSEEQLQPFNGTLSGFTGE 472
           PHDD  LVI + + N+E+  +++DTGSS DVL++DAF + G  + +LQ     L+GF G+
Sbjct: 60  PHDD-ALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQGRKTPLTGFAGD 118

Query: 473 KVHVRGYVTLKTIFGTGDQQTSIKVRYLVINSPSSYNVIIGRPSINLLDAFVSTKHLLMK 532
                G + L TI     Q T+    +LV++  + +N I+GRP ++++ A  ST H  +K
Sbjct: 119 TTFSIGTIQLPTIARGVRQLTN----FLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCIK 174

Query: 533 YPLDSGRVGVVHGDQKIARECYHASLRLKKHKEFEVQVIDLDPREDFPQERIEPIEE--- 589
           +P   G + VV+G Q+ +R+CY  S    K  +  V +I+ +  E      ++P +    
Sbjct: 175 FPSYKG-IAVVYGSQRSSRKCYMGSYEDIKKADPVVLMIEDELAEMKTVRSLDPSQRGTR 233

Query: 590 ---VKDVVIGPL-PHQITKIGTSLSGLEEEILVQLLRENVDLFAWAPSDMPGIDI 640
              +  V I    P +   IG  L     E L+  L+EN D FAW+ +++ GI +
Sbjct: 234 KSLITQVCIDESDPKRCVGIGHDLDLTVREDLITFLKENKDSFAWSSANLQGISL 288


>At2g11940 putative retroelement gag/pol polyprotein
          Length = 1212

 Score =  444 bits (1141), Expect = e-124
 Identities = 314/1011 (31%), Positives = 481/1011 (47%), Gaps = 191/1011 (18%)

Query: 617  LVQLLRENVDLFAWAPSDMPGIDIGVACHHLAVRTSVKPVVQRKRKMGEEKRKAVDEEVK 676
            L+Q L +N   FAW   +M GI   V  H L V  + KPV Q+++K G ++ +AV+ +V 
Sbjct: 364  LIQFLEKNKSTFAWTIREMTGISTEVISHELNVDPTFKPVKQKRQKHGPDRAEAVNVKVV 423

Query: 677  KLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNA 736
            +L +A                                        D +PLP ID  I++ 
Sbjct: 424  RLLKA----------------------------------------DCFPLPHIDRPIEST 443

Query: 737  SGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTI 796
            +G + LSFMDA+SGYNQI M+P D  KT+F+T +  Y+Y+VM FGL+N GAT+Q  ++ +
Sbjct: 444  TGQEMLSFMDAFSGYNQIMMNPDDQEKTSFITERGTYYYKVMPFGLKNVGATYQLLVNIM 503

Query: 797  FSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLG 856
            F + +G+ +EVYIDD++VKT+   SH    ++ F  + +F M+LNP KCTF V + +FLG
Sbjct: 504  FKDLLGKTMEVYIDDMLVKTAFSASHLDHFQQCFDILNEFGMKLNPLKCTFAVPSREFLG 563

Query: 857  FLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFAFFATIKK 916
            F      I  + DKC     +    N                                  
Sbjct: 564  F------ISRSTDKCLPFCTLLRKVN---------------------------------- 583

Query: 917  KEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEESDEREK 976
             + F W++ C+EAF ++K +L+ P +L +P  G  LFLY+SVSENA+S VLV      E+
Sbjct: 584  -KGFVWDERCEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENAISGVLVRVERSDER 642

Query: 977  PIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPYFQSHKVVIRTNYPVKQILGKLDLA 1036
            PI++VS+     E RY  +EKLALAV+  ARKLRPYFQSH +V+ T+ P++ IL   + +
Sbjct: 643  PIFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSLPLRTILHSPNQS 702

Query: 1037 GRMLSWSVELSEYDIQFAPRNNIKSQVLADFVVEFTSPIQEAVPHVWLLSVDGSSNIKGS 1096
            GR+  W++ELSE++++F  R ++KSQVLADF++E   P+             G    K +
Sbjct: 703  GRLAKWAIELSEFNLEFHARTSLKSQVLADFLIEL--PLATTAS-----DYSGDYEAKDN 755

Query: 1097 GAGIILEGPGDLLIEQSLKFDFKASNNQAEYEALIAGMLLAQEMGAKNLRARSDSQLMTN 1156
                 +E   DLL E + KF+        ++E  +  +  A+   A  L A + +  +T 
Sbjct: 756  R----MEAYLDLLRELAEKFE--------KFE--LIKVPRAENSAADALAALASTPEITV 801

Query: 1157 QISGEYQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLASTKKPGNNRT 1216
            +     +T  Q              + +  E  +V R    + ++ A     ++  ++  
Sbjct: 802  RRIISVETIAQP-------------NIRIEEINFVTRAMRRQLEVQANNPELQQL-HDED 847

Query: 1217 VIQEVISAPSTDEKAVFELNQE-PEGWMTPLLKFLTGSFVAKNDEYAQLVRRRATKFVVI 1275
             I E +   + ++   + L  +    W  P+  ++    +  +   A+ ++    +F + 
Sbjct: 848  EIPEAVPLVADEDSTEYNLPHDWGADWREPIRNYIFNGVLPTDKWEARKLKATCARFCLA 907

Query: 1276 AGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHD 1335
               LY+R  ++P   C+   +T  V+ E+H+G CG+H GGRSLA KL + GY+WP M  D
Sbjct: 908  DDILYRRIISAPDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVAD 967

Query: 1336 CCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPGQLKFLIVDVD 1395
            C  +  +  +   F               SP PF KW +DIVGP   +   ++FL+++  
Sbjct: 968  CEAYAHRSRRTFHFG-------------ISPLPFMKWSMDIVGPLHVSTRGVRFLLLE-- 1012

Query: 1396 YFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFCKQLGIE 1455
                WVEA A S IT  +V  F WK+IIC  GLP  IVTDNG QF S +   F  +  I 
Sbjct: 1013 ----WVEAAAYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIR 1068

Query: 1456 TKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETP 1515
                +  +PQ N +A     +I  +IK                        P +     P
Sbjct: 1069 LNRSTPRYPQGNVEA-----VIPAEIK-----------------------VPRTRRIRNP 1100

Query: 1516 FTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDMIDEVREAAHIREFAAKQRAA 1575
                     M+ V IDT                       IDE R  A +R       AA
Sbjct: 1101 KNEAANNKMMVDV-IDT-----------------------IDERRNRALVRMQNYHNAAA 1136

Query: 1576 RRYNSKVIPRSMKEGDLVLKQV---VAPTRIGKLLPSWKGPYRVKEKLQHG 1623
            + YNS V  RS   G LVL+++    A    GKL  SW+GPY++   +++G
Sbjct: 1137 QYYNSNVRSRSFDVGTLVLRRIHQNTAEKGAGKLGISWEGPYKITHIVRNG 1187



 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 36/158 (22%), Positives = 62/158 (38%), Gaps = 36/158 (22%)

Query: 296 SKTMGQDKNAWCKYHLIEGHNTDDCVHLKREIEKLLLNGKLRGYAKEKHHSERREDKPNP 355
           SK   +D NA+C  H + GH T  C  L R +     +G++                   
Sbjct: 236 SKKWIRDPNAYCDIHKMNGHATKACKALGRLLAAKYASGEI------------------- 276

Query: 356 EPKHTLHTISGGFAGGGESSNLRKKYVRQVMLLGDSPSSPKKYPHVTFSSEDFGRVLPHD 415
                 H +        + + + +       L  +  S P   P      E+   +    
Sbjct: 277 ------HEV--------DVTTIEQAQAAYEALESEKTSPP---PRTRSKKEETSYLDKPH 319

Query: 416 DDPLVISVQLFNWEIKRVLIDTGSSADVLYFDAFSKMG 453
           DD  VI++ + N +++RVLI TGSS D+++ D  + +G
Sbjct: 320 DDAFVITLDIANCKVQRVLIVTGSSVDLIFLDTLANLG 357



 Score = 41.2 bits (95), Expect = 0.005
 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 27/129 (20%)

Query: 58  NFKPPQLPTFDGRSDPSEHVTVFNTRMSVYGVADSLKCKLLAGTLADAALRWYMSLPRFS 117
           +F+  +LP+++ + DP EH+T F               +++AG + + ++ +        
Sbjct: 116 DFRDFKLPSYNDKGDPKEHLTSF---------------QVIAGRVEEGSIDY-------- 152

Query: 118 IVGYQDLTKKFTQQFSGTRHRKVLSTSLFNVRQGPNESLREYLARFNDSTIKVSNPNQEV 177
              ++ L+  F +Q+       V    L+N+ Q  +E L+ Y+  F +  ++V N +   
Sbjct: 153 ---FKQLSTTFIKQYGYFIKNDVSEAQLWNLSQS-DEPLQTYITAFKEIMVQVPNLSDSA 208

Query: 178 FVGAFQNGL 186
              A +NGL
Sbjct: 209 AQSALKNGL 217


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  367 bits (943), Expect = e-101
 Identities = 167/322 (51%), Positives = 248/322 (76%)

Query: 660 KRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTDLNMAC 719
           +RK+G E+ KAV++EV KL +   I E++YP WLANTV+VKK +GK R+C+D+TDLN AC
Sbjct: 469 RRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKAC 528

Query: 720 PKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMS 779
           PKD +PLP ID L+++ +G + LSFMDA+SGYNQI M+P D  KT F+T++  Y Y+VM 
Sbjct: 529 PKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMP 588

Query: 780 FGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMR 839
           FGLRNAGAT+ R ++ +FS  +G+ +EVYIDD+++K+ +K+ H   L+E F  + ++ M+
Sbjct: 589 FGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMK 648

Query: 840 LNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLAALSRF 899
           LNP KCTFGV +G+FLG+++TK+GIEANP++  A +NM +P N +EVQ+LTGR+AAL+RF
Sbjct: 649 LNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRF 708

Query: 900 LSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVS 959
           +S + DK+  F+  +K  +EF W+++C+EAFG++K +LT+PP+L +P     L+LY+SVS
Sbjct: 709 ISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVS 768

Query: 960 ENALSSVLVEESDEREKPIYFV 981
            +A+S VL+ E    +KPIY++
Sbjct: 769 NHAVSGVLIREDRGEQKPIYYI 790



 Score =  281 bits (719), Expect = 2e-75
 Identities = 176/560 (31%), Positives = 285/560 (50%), Gaps = 110/560 (19%)

Query: 1131 IAGMLLAQEMGAKNLRARSDSQLMTNQISGEYQTKDQQLSKYLARVRKLAGDFQFFEAIY 1190
            ++G+L+ ++ G +    +    ++ NQ +G+Y+ KD ++  YL  V+ LA +F+ FE I 
Sbjct: 772  VSGVLIREDRGEQ----KPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIR 827

Query: 1191 VPRESNSRADLLAKLASTKKPGNNRTVIQEVISAPSTDEKAVFELNQEPEGWMTPLLKFL 1250
            +PR  N+ AD LA LAST  P  N      +I      E+++ E   E E ++    +  
Sbjct: 828  IPRGQNTTADALAALASTSDPEVN-----SIIPVECISERSIKE---EKEAFVVTRSRAA 879

Query: 1251 TGSFVAKNDEYAQL--VRRRATKFVVIA-------------------------------- 1276
                  + D   +L  V+RR +K   +                                 
Sbjct: 880  ARD---RGDTAVELPPVKRRKSKEATVPKPAVQENIGIELIEEVISDAKIEAETEPWVDE 936

Query: 1277 --------------GKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKL 1322
                            LY+RG + P L  +     E+V+ EVHEG+CGSH  GR++A K+
Sbjct: 937  DILAPNEHPEPEALNSLYRRGVSDPYLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKI 996

Query: 1323 LRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQ 1382
             +  YYWP M  DC ++ ++C +CQ  +   + P+   +S+ +P+PF +W +DI+GP  +
Sbjct: 997  KKMCYYWPTMITDCVKYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLHR 1056

Query: 1383 APGQLKFLIVDVDYFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDNGTQFAS 1442
            +   +++L+V  DYF+KW+EAEA+                                    
Sbjct: 1057 STRGVQYLLVLTDYFSKWIEAEAI------------------------------------ 1080

Query: 1443 SKVVNFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWS 1502
              ++N+    GI+  + ++ +PQ NGQAE+ANK I++++KK+L   KG W ++L  VLW+
Sbjct: 1081 --LLNW----GIKVSYSTLRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWA 1134

Query: 1503 YHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRREH--FSEESNEVGIRCTMDMIDEVR 1560
            Y TTP  +TGETPF++VYG  A++P E++ P  RR     +E+ N   +  ++D I+E R
Sbjct: 1135 YRTTPRRSTGETPFSLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERR 1194

Query: 1561 EAAHIREFAAKQRAARRYNSKVIPRSMKEGDLVLKQVVAPTR---IGKLLPSWKGPYRVK 1617
            + A I+    +  AAR YNSKV  R    GD VLK+V    +    GKL  +W+GPY V 
Sbjct: 1195 DQALIQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVT 1254

Query: 1618 EKLQHGAYKLEELSGNPVPR 1637
            E +++G Y+L++L   PV R
Sbjct: 1255 EVVRNGVYRLKDLEDRPVQR 1274



 Score = 80.1 bits (196), Expect = 1e-14
 Identities = 52/199 (26%), Positives = 101/199 (50%), Gaps = 6/199 (3%)

Query: 38  LDEPEPQPFSTEIWNAPVPDNFKPPQLPTFDGRSDPSEHVTVFNT---RMSVYGVADSLK 94
           +++    PF+ +I +  + D+ K   L +++G  DP  ++  F     R+ +    + ++
Sbjct: 137 IEKARQTPFTPQITSLRIRDSRKL-NLESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVR 195

Query: 95  -CKLLAGTLADAALRWYMSLPRFSIVGYQDLTKKFTQQFSGTRHRKVLSTSLFNVRQGPN 153
            CKL +  L   AL W+  L   SI  + +L+  F +Q+S    + +  T L+N+ QGPN
Sbjct: 196 YCKLFSENLCGQALMWFTQLEPGSISNFNELSVVFLKQYSILMDKSISDTDLWNLSQGPN 255

Query: 154 ESLREYLARFNDSTIKVSNPNQEVFVGAFQNGL-RAGQFNESLAQKPADSMEEIIARAEC 212
           E+LR ++ +F     K+S  +Q+  + A + GL    +F E L     D++++ + RA  
Sbjct: 256 ETLRAFITKFKYVLSKLSRISQQSALSALRKGLWYDSRFKEDLILHKLDTIQDALFRANN 315

Query: 213 YVKGEESNAEKRARDVKEK 231
           +++ E+       RD + K
Sbjct: 316 WMEVEDEKESFAKRDKQAK 334



 Score = 50.4 bits (119), Expect = 8e-06
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 373 ESSNLRKKYVRQVML-LGDSPSSPKKYPHVTFSSEDFGRVLPHDDDPLVISVQLFNWEIK 431
           + S++ KK+ R V L L  S     +   + F  ++   +    DD LV+++ + N+E+ 
Sbjct: 380 DESSVIKKHSRNVHLKLSLSEEVDFQSTSILFDEKETQHLERSHDDALVVTLDVANFEVS 439

Query: 432 RVLIDTGSSADVLYFDAFSKMGLS 455
           R+LIDTGSS D+++     +MG+S
Sbjct: 440 RILIDTGSSVDLIFLSTLERMGIS 463


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  335 bits (860), Expect = 1e-91
 Identities = 248/786 (31%), Positives = 368/786 (46%), Gaps = 151/786 (19%)

Query: 913  TIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEESD 972
            T K  + F WN+ C+EAF ++K++L+ P +L +   G  LFLY++VSE+A++        
Sbjct: 622  TAKISKGFIWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVT-------- 673

Query: 973  EREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPYFQSHKVVIRTNYPVKQILGK 1032
                          G ++R ++ +K            RP F      ++T YP+ +   K
Sbjct: 674  --------------GVQVRVERSDK------------RPIFY-----VKTRYPMME---K 699

Query: 1033 LDLAGRMLSWSVELSEYDIQFAPRNNIKSQVLADFVVEFTSPIQEAVPHVWLLSVDGSSN 1092
            L LA  +++ + +L  Y  Q  P   + S  L   +    SP Q      W +       
Sbjct: 700  LALA--VVTAARKLRPY-FQSHPIVVLTSLPLRTIL---HSPTQSGRLGKWAIE------ 747

Query: 1093 IKGSGAGIILEGPGDLLIEQSLKFDFKASNNQAEYEALIAGMLLAQEMGAKNLRARSDSQ 1152
                            L E  L+F  + S N     +   G +         +R+R+ S 
Sbjct: 748  ----------------LSEFDLEFRARTSLNSTMDTSRQWGFIKTW------VRSRNLSD 785

Query: 1153 LMT-NQISGEYQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLASTKKP 1211
              T N+ SGEY+ KD  +  YL  VR+++G F+ FE   +PR  NS A+ LA LAST + 
Sbjct: 786  APTANRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEV 845

Query: 1212 GNNRTVIQEVISAPS---------------------TDEKAVFELNQEPE---------- 1240
               R +  E IS PS                     + E  + +L  + E          
Sbjct: 846  TLPRVIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEI 905

Query: 1241 ------------------------GWMTPLLKFLTGSFVAKNDEYAQLVRRRATKFVVIA 1276
                                     W  P+  ++    +      A+ ++    +F +  
Sbjct: 906  VENQSLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLPAEKWAARKLKATCARFCIAN 965

Query: 1277 GKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDC 1336
              LY+R  ++P   C+   +T  V+ EVH+G CG+H GGRSLA K+ + GYYWP +  DC
Sbjct: 966  DILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADC 1025

Query: 1337 CEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPGQLKFLIVDVDY 1396
              + +KC++CQ+ +     PA  LT+V +P+PF KW +DIVGP   +             
Sbjct: 1026 EAYARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS------------- 1072

Query: 1397 FTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFCKQLGIET 1456
             T+ VEA A S IT  +V  F WK IIC  GLP  IVTDNG+QF S +   FC++  I  
Sbjct: 1073 -TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRL 1131

Query: 1457 KFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETPF 1516
               +  +PQ NGQAE+ NK I++++KKKL   KG W  +L  VLW+  TTP   T ETPF
Sbjct: 1132 SHSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPF 1191

Query: 1517 TMVYGADAMLPVEIDTPTWR--REHFSEESNEVGIRCTMDMIDEVREAAHIREFAAKQRA 1574
            +++YG +A++P EI  P+ R  R   +E  N   I   +D IDE R  A  R        
Sbjct: 1192 SLIYGMEAVIPAEIKVPSARRIRNPQNETENNEMIIDVIDTIDERRNRALARMQNYHNAG 1251

Query: 1575 ARRYNSKVIPRSMKEGDLVLKQV---VAPTRIGKLLPSWKGPYRVKEKLQHGAYKLEELS 1631
            AR YNS V  RS + G LVL++V    A    GKL  SW+GPY++   +++G Y+L  + 
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINME 1311

Query: 1632 GNPVPR 1637
            G  V R
Sbjct: 1312 GKTVRR 1317



 Score =  174 bits (441), Expect = 4e-43
 Identities = 83/151 (54%), Positives = 111/151 (72%)

Query: 635 MPGIDIGVACHHLAVRTSVKPVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLA 694
           M GI   V  H L V  + KPV Q++RK+G ++ +AV+ EV +L E   I E+KYP WLA
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471

Query: 695 NTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQI 754
           N V+VKK +GKWR+CVD+TDLN AC KD +PLP ID L+++ +G++ LSFMDA+SGYNQI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531

Query: 755 KMDPLDAPKTAFMTNQKNYHYRVMSFGLRNA 785
            M+P D  KT+F+T    Y+Y+VM FGL+NA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562



 Score = 54.3 bits (129), Expect = 6e-07
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 13/203 (6%)

Query: 1   MRSQIAQLLEQNEALLASV-ETIQQVQQQEKTDSHHGDLDEPEPQPFSTEIWNAPVPDNF 59
           + S++  L +Q  A+ A V +      + EK       ++     PF+  I    + + F
Sbjct: 118 LNSELQNLQDQIWAMNAKVHQATTSAPEVEKV------IEATRRTPFTPRISKLRIRE-F 170

Query: 60  KPPQLPTFDGRSDPSEHVTVFNTRMSVYGVA----DSLKCKLLAGTLADAALRWYMSLPR 115
           +  +LP ++G+ D  EH+T F        +     D+  CKL +  L   AL W+  L  
Sbjct: 171 RDFKLPVYNGKGDLKEHLTSFQVIAGRVPLEPHEEDAGLCKLFSENLFGLALTWFTQLEE 230

Query: 116 FSIVGYQDLTKKFTQQFSGTRHRKVLSTSLFNVRQGPNESLREYLARFNDSTIKVSNPNQ 175
            SI  ++ L+  F +Q+    +  +    L+N  Q  +E LR Y+ R   + +      Q
Sbjct: 231 GSIDNFKQLSTAFIKQYEYFINSDITEAHLWNFSQSADEPLRTYIYRVQGNHVNRPETIQ 290

Query: 176 EVFVGAFQNGLRAGQFNESLAQK 198
           +    A  N + A +    LA+K
Sbjct: 291 DALHRA-TNWINAEEERAFLAKK 312



 Score = 35.0 bits (79), Expect = 0.36
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 497 VRYLVINSPSSYNVIIGRPSINLLDAFVSTKHLLMKYPLDSGRV 540
           V + V + P++YNVI+G P +  +    ST H  +K+P   G++
Sbjct: 369 VEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKM 412


>At2g14380 putative retroelement pol polyprotein
          Length = 764

 Score =  314 bits (805), Expect = 2e-85
 Identities = 152/316 (48%), Positives = 225/316 (71%), Gaps = 11/316 (3%)

Query: 600 HQITKIGTSLSGLEEEILVQLLRENVDLFAWAPSDMPGIDIGVACHHLAVRTSVKPVVQR 659
           HQ  KI TS+        ++ +R N +L      DM GID  VACH L V  + K V Q+
Sbjct: 453 HQCIKIPTSIG-------IETIRGNQNL----AHDMVGIDPEVACHELNVDPTFKLVKQK 501

Query: 660 KRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTDLNMAC 719
           +RK+G E+ KAV++EV KL +A  I E+KYP WLAN V+VKK + KWR+C+D+TDLN AC
Sbjct: 502 RRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLANPVVVKKKNDKWRVCIDFTDLNKAC 561

Query: 720 PKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMS 779
           PKD +PLP ID +++  +G + LSFMDA+SGYNQI M   D  KT+F+ ++  Y Y+VM 
Sbjct: 562 PKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHKDDQEKTSFIIDRGTYCYKVMP 621

Query: 780 FGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMR 839
           FGL+N GA +QR ++ +F+ Q+G+ +EVYIDD++VK++    H   LK  F+ + K++M+
Sbjct: 622 FGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSTRSADHIDHLKACFETLNKYNMK 681

Query: 840 LNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLAALSRF 899
           LNP KC FGV +G+FLG+++TK+GIEANP + +AI+++++P N +EVQ+LTGR+A L+RF
Sbjct: 682 LNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAILDLQSPRNKKEVQRLTGRIAGLNRF 741

Query: 900 LSCAGDKAFAFFATIK 915
           ++ + DK+  F+  ++
Sbjct: 742 IARSTDKSLPFYQLLR 757



 Score =  106 bits (265), Expect = 1e-22
 Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 69/337 (20%)

Query: 272 NTRPEKILKEVFESKIIPPPPFNRSKTMGQDK-NAWCKYHLIEGHNTDDCVHLKREIEKL 330
           NT P++ L     S       F+ S+   +++ + +C +H   GH+T  C HL    + +
Sbjct: 153 NTDPQQFLSSF--SVATQRDHFHPSEAEVENRLDQYCDFHKRSGHSTAACRHL----QSI 206

Query: 331 LLNGKLRGYAKEKH---------------------------HSERREDKPN--------- 354
           LLN   +G  + +H                           H+ R+++ P          
Sbjct: 207 LLNKYKKGDIEVQHRQYKSHNNTYAARGGRDGNNVFHRLGPHTGRQQEAPPANEEERHPD 266

Query: 355 -----------------PEPKHTLHTISGGFAGGGESSNLRKKYVRQ-VMLLGDSPSSPK 396
                            P P+  ++ I GG     +S    K+Y++     L  SP++ +
Sbjct: 267 MEPPKKNRENDQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKE 326

Query: 397 KYPHVTFSSED-FGRVLPHDDDPLVISVQLFNWEIKRVLIDTGSSADVLYFDAFSKMGLS 455
             P +TF+SED FG  LPH+D PLVI + +   E+ R+LIDTGSS +V++ D   KM + 
Sbjct: 327 MTP-LTFTSEDLFGVDLPHND-PLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVH 384

Query: 456 EEQLQPFNGTLSGFTGEKVHVRGYVTLKTIFGTGDQQTSIKVRYLVINSPSSYNVIIGRP 515
           +  ++P    L+GF G  +   G + L    G      +   +++V++ P+ YN+I+G P
Sbjct: 385 DRHIKPSVRPLTGFDGNTMMTNGTIKLPIYLG----GAATWHKFVVVDKPTIYNIILGTP 440

Query: 516 SINLLDAFVSTKHLLMKYPLDSGRVGVVHGDQKIARE 552
            I+ + A  S+ H  +K P   G +  + G+Q +A +
Sbjct: 441 WIHDMQAIPSSYHQCIKIPTSIG-IETIRGNQNLAHD 476


>At4g03800
          Length = 637

 Score =  297 bits (761), Expect = 3e-80
 Identities = 147/336 (43%), Positives = 225/336 (66%), Gaps = 21/336 (6%)

Query: 635 MPGIDIGVACHHLAVRTSVKPVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLA 694
           MP ID  + CH L V    KP+ Q++RK+G E+ KAV+ ++ KL +   I E++YP W+A
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380

Query: 695 NTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQI 754
            TV+VKK +GK R+C+D+TDLN ACPKD +PLP ID L+++ +G + L+FMDA+ GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440

Query: 755 KMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVV 814
            M+P D  KT+F+T++               GAT+Q  ++ +F+  + + +EV IDD +V
Sbjct: 441 MMNPEDQEKTSFITDR---------------GATYQWLVNKMFNEHLRKTMEVSIDDTLV 485

Query: 815 KTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAI 874
           K+ +K+ H   L E F+ + ++ M+LN  KCTFGV +G+FLG+++TK+GIEANP++  A 
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545

Query: 875 INMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIK 934
           +   +  N +EVQ+LTGR+A+ S       DK+  F+  +K    F W+++C+EAF ++K
Sbjct: 546 LKTPSLRNFKEVQRLTGRIASRST------DKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599

Query: 935 QFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEE 970
            +LTTPP+L +P     L+LY+ VS +A+S VLV E
Sbjct: 600 AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRE 635



 Score = 83.6 bits (205), Expect = 9e-16
 Identities = 73/256 (28%), Positives = 119/256 (45%), Gaps = 39/256 (15%)

Query: 315 HNTDDCVHLKREIEKLLLNGKLR-----GYAKEKHHSERREDKPNP---------EPKHT 360
           H T DC+ LKR + +L  +G L       + K+ H +    +  N          EP+ +
Sbjct: 81  HLTKDCIVLKRYLAELWASGDLSKFNIDDFVKQYHEARDNSETQNSKRPRLTNEEEPRSS 140

Query: 361 ---LHTISGGFAGGGESSNLRKKYVRQVMLLGDSPSSPKKYP--HVTFSSEDFGRVLPHD 415
              ++ I GG      S +  KK+ R  +LL  S S    Y    V+F  E+   +    
Sbjct: 141 KGKINVILGGSKLCHNSVSAIKKH-RPNVLLKSSLSEEVNYQCSSVSFDEEETRHIERPH 199

Query: 416 DDPLVISVQLFNWEIKRVLIDTGSSADVLYFDAFSKMGLSEEQLQPFNGTLSGFTGEKVH 475
           DD L+I++ + N++I R+L+DTGSS D+++    S               L  FT E   
Sbjct: 200 DDALIITLDVANFKISRILVDTGSSVDLIFLGPPS--------------PLVAFTSESAM 245

Query: 476 VRGYVTLKTIFGTGDQQTSIKVRYLVINSPSSYNVIIGRPSINLLDAFVSTKHLLMKYPL 535
             G + L  + G    + S  V ++V + P++YN+I+G P I  + A  ST H  +K+P 
Sbjct: 246 SLGTIKLPVLAG----KMSKIVDFVVFDKPATYNIILGTPWIFQMKAVPSTYHQWLKFPT 301

Query: 536 DSGRVGVVHGDQKIAR 551
            +G V  + GD + +R
Sbjct: 302 SNG-VETIWGDLEGSR 316


>At2g13230 pseudogene
          Length = 353

 Score =  234 bits (597), Expect = 3e-61
 Identities = 134/361 (37%), Positives = 196/361 (54%), Gaps = 26/361 (7%)

Query: 1169 LSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLASTKKPGNNRTVIQEVISAPSTD 1228
            +  YLA V+  A  F  F+   +PR  N+ AD LA LAST      R +  E I  PS +
Sbjct: 1    MEAYLALVQDHAKQFHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPSIE 60

Query: 1229 EKAVFEL--------------NQEPEG----WMTPLLKFLTGSFVAKNDEYAQLVRRRAT 1270
               V                 N    G    W+ P+  F++   V  +   A+ ++  A 
Sbjct: 61   LDKVEHAFPIQVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKVRLDKWEARKLKAEAA 120

Query: 1271 KFVVIAGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWP 1330
            +FV++  KL+K   + PL+ C+ +     V+ EVH G CG++ GGR+LA K+ R GY+WP
Sbjct: 121  RFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLGYFWP 180

Query: 1331 RMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPGQLKFL 1390
             M       +K C+KCQR +   + PA  L+S+ SP+P  +W +DI+GP   A  Q K +
Sbjct: 181  TM-------IKDCEKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPM-HASKQKKLV 232

Query: 1391 IVDVDYFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFCK 1450
            +V  DYF+K  EAE+ + I   +V  F WK I+C  G+P  IVTDNG+QF S++   FC 
Sbjct: 233  LVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFISTRFQGFCD 292

Query: 1451 QLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHST 1510
            + GI     +  + Q NGQA++ANK I++ +KK+L   KG W ++L  VLWS+ TTP   
Sbjct: 293  KWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSHRTTPRRA 352

Query: 1511 T 1511
            T
Sbjct: 353  T 353


>At3g11970 hypothetical protein
          Length = 1499

 Score =  219 bits (558), Expect = 1e-56
 Identities = 183/637 (28%), Positives = 305/637 (47%), Gaps = 36/637 (5%)

Query: 433  VLIDTGSSADVLYFDAFSKMGLSEEQLQPFNGTLSGFTGEKVHVRGYVTLKTIFGTGDQQ 492
            +LID+GS+ + L  +  +K+G   +       +++   G K+ V G VT    F    Q 
Sbjct: 403  ILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVAD--GRKLRVEGKVT---DFSWKLQT 457

Query: 493  TSIKVRYLVINSPSSYNVIIGRPSINLLDAFV-STKHLLMKYPLDSGRVGVVHG-DQKIA 550
            T+ +   L+I      ++++G   +  L       K L M++  ++ +V ++HG      
Sbjct: 458  TTFQSDILLIPL-QGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKV-LLHGLTSGSV 515

Query: 551  RECYHASLRLKKHKEFEVQVIDLDPREDFPQERIEPIEEVKDVVIGPLPHQITKIGTSLS 610
            RE    + +L+K +E +VQ+  L             ++EV +   G L   I  + + L 
Sbjct: 516  REV--KAQKLQKLQEDQVQLAMLC------------VQEVSESTEGELC-TINALTSELG 560

Query: 611  GLEEEILVQLLRENVDLFAWAPSDMPGIDIGVACHHLAVRTSVKPVVQRKRKMGEEKRKA 670
              EE ++ ++L E  D+F   P+ +P        H + +     PV QR  +    ++  
Sbjct: 561  --EESVVEEVLNEYPDIFI-EPTALPPFR-EKHNHKIKLLEGSNPVNQRPYRYSIHQKNE 616

Query: 671  VDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSID 730
            +D+ V+ L     +     P + +  VLVKK  G WR+CVDY +LN    KD +P+P I+
Sbjct: 617  IDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIE 675

Query: 731  HLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQ 790
             L+D   G    S +D  +GY+Q++MDP D  KTAF T+  ++ Y VM FGL NA ATFQ
Sbjct: 676  DLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQ 735

Query: 791  RSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQ 850
              M+ IF   + + + V+ DD++V +S  + H   LK++F+ +R   +    +KC F V 
Sbjct: 736  GLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVP 795

Query: 851  AGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFAF 910
              ++LG  ++ +GIE +P K +A+     P  +++++   G      RF+   G  A   
Sbjct: 796  KVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPL 855

Query: 911  FATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEE 970
             A + K + FEW     +AF  +K  L   P+L  P       +        + +VL++E
Sbjct: 856  HA-LTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE 914

Query: 971  SDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPY-FQSHKVVIRTNYPVKQI 1029
                  P+ ++SR LKG +L     EK  LAVI   RK R Y  QSH ++      +K +
Sbjct: 915  G----HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYL 970

Query: 1030 LGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQVLAD 1066
            L +         W  +L E+D +   R   K  V+AD
Sbjct: 971  LEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVAD 1006



 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 92/378 (24%), Positives = 150/378 (39%), Gaps = 40/378 (10%)

Query: 1261 YAQLVRRRATKFVVIAGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAA 1320
            ++Q + RR +K VV A    K                  +LL +H    G H  GR +  
Sbjct: 1061 WSQNILRRKSKIVVPANDNIKN----------------TILLWLHGSGVGGH-SGRDVTH 1103

Query: 1321 KLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWG---VDIV 1377
            + ++  +YW  M  D   +++ C  CQ+      A    L  +  P P   W    +D +
Sbjct: 1104 QRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL--PIPDTIWSEVSMDFI 1161

Query: 1378 GPFPQAPGQLKFLIVDVDYFTKWVEAEAVSK-ITAERVVKFYWKKIICHFGLPKYIVTDN 1436
               P + G+   ++V VD  +K     A+S   +A  V   Y   +    G P  IV+D 
Sbjct: 1162 EGLPVSGGKTVIMVV-VDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDR 1220

Query: 1437 GTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQL 1496
               F S     F    G+  K  S  HPQ++GQ E  N+ +   ++    D   LW++ L
Sbjct: 1221 DVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWL 1280

Query: 1497 HEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDMI 1556
                + Y+T  HS++  TPF +VYG           P     +   ES    +  ++   
Sbjct: 1281 ALAEYWYNTNYHSSSRMTPFEIVYG---------QVPPVHLPYLPGESKVAVVARSLQER 1331

Query: 1557 DEVREAAHIREFAAKQRAARRYNSKVIPRSMKEGDLVL-------KQVVAPTRIGKLLPS 1609
            +++          A+ R  +  +     R  + GD V        +Q V      KL P 
Sbjct: 1332 EDMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPK 1391

Query: 1610 WKGPYRVKEKLQHGAYKL 1627
            + GPY++ ++    AYKL
Sbjct: 1392 YFGPYKIIDRCGEVAYKL 1409


>At1g36590 hypothetical protein
          Length = 1499

 Score =  219 bits (558), Expect = 1e-56
 Identities = 183/637 (28%), Positives = 305/637 (47%), Gaps = 36/637 (5%)

Query: 433  VLIDTGSSADVLYFDAFSKMGLSEEQLQPFNGTLSGFTGEKVHVRGYVTLKTIFGTGDQQ 492
            +LID+GS+ + L  +  +K+G   +       +++   G K+ V G VT    F    Q 
Sbjct: 403  ILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVAD--GRKLRVEGKVT---DFSWKLQT 457

Query: 493  TSIKVRYLVINSPSSYNVIIGRPSINLLDAFV-STKHLLMKYPLDSGRVGVVHG-DQKIA 550
            T+ +   L+I      ++++G   +  L       K L M++  ++ +V ++HG      
Sbjct: 458  TTFQSDILLIPL-QGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKV-LLHGLTSGSV 515

Query: 551  RECYHASLRLKKHKEFEVQVIDLDPREDFPQERIEPIEEVKDVVIGPLPHQITKIGTSLS 610
            RE    + +L+K +E +VQ+  L             ++EV +   G L   I  + + L 
Sbjct: 516  REV--KAQKLQKLQEDQVQLAMLC------------VQEVSESTEGELC-TINALTSELG 560

Query: 611  GLEEEILVQLLRENVDLFAWAPSDMPGIDIGVACHHLAVRTSVKPVVQRKRKMGEEKRKA 670
              EE ++ ++L E  D+F   P+ +P        H + +     PV QR  +    ++  
Sbjct: 561  --EESVVEEVLNEYPDIFI-EPTALPPFR-EKHNHKIKLLEGSNPVNQRPYRYSIHQKNE 616

Query: 671  VDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSID 730
            +D+ V+ L     +     P + +  VLVKK  G WR+CVDY +LN    KD +P+P I+
Sbjct: 617  IDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIE 675

Query: 731  HLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQ 790
             L+D   G    S +D  +GY+Q++MDP D  KTAF T+  ++ Y VM FGL NA ATFQ
Sbjct: 676  DLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQ 735

Query: 791  RSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQ 850
              M+ IF   + + + V+ DD++V +S  + H   LK++F+ +R   +    +KC F V 
Sbjct: 736  GLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVP 795

Query: 851  AGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFAF 910
              ++LG  ++ +GIE +P K +A+     P  +++++   G      RF+   G  A   
Sbjct: 796  KVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPL 855

Query: 911  FATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEE 970
             A + K + FEW     +AF  +K  L   P+L  P       +        + +VL++E
Sbjct: 856  HA-LTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE 914

Query: 971  SDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPY-FQSHKVVIRTNYPVKQI 1029
                  P+ ++SR LKG +L     EK  LAVI   RK R Y  QSH ++      +K +
Sbjct: 915  G----HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYL 970

Query: 1030 LGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQVLAD 1066
            L +         W  +L E+D +   R   K  V+AD
Sbjct: 971  LEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVAD 1006



 Score = 90.9 bits (224), Expect = 6e-18
 Identities = 91/378 (24%), Positives = 150/378 (39%), Gaps = 40/378 (10%)

Query: 1261 YAQLVRRRATKFVVIAGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAA 1320
            ++Q + RR +K VV A    K                  +LL +H    G H  GR +  
Sbjct: 1061 WSQNILRRKSKIVVPANDNIKN----------------TILLWLHGSGVGGH-SGRDVTH 1103

Query: 1321 KLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWG---VDIV 1377
            + ++  +Y   M  D   +++ C  CQ+      A    L  +  P P   W    +D +
Sbjct: 1104 QRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL--PIPDTIWSEVSMDFI 1161

Query: 1378 GPFPQAPGQLKFLIVDVDYFTKWVEAEAVSK-ITAERVVKFYWKKIICHFGLPKYIVTDN 1436
               P + G+   ++V VD  +K     A+S   +A  V + Y   +    G P  IV+D 
Sbjct: 1162 EGLPVSGGKTVIMVV-VDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDR 1220

Query: 1437 GTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQL 1496
               F S     F    G+  K  S  HPQ++GQ E  N+ +   ++    D   LW++ L
Sbjct: 1221 DVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWL 1280

Query: 1497 HEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDMI 1556
                + Y+T  HS++  TPF +VYG           P     +   ES    +  ++   
Sbjct: 1281 ALAEYWYNTNYHSSSRMTPFEIVYG---------QVPPVHLPYLPGESKVAVVARSLQER 1331

Query: 1557 DEVREAAHIREFAAKQRAARRYNSKVIPRSMKEGDLVL-------KQVVAPTRIGKLLPS 1609
            +++          A+ R  +  +     R  + GD V        +Q V      KL P 
Sbjct: 1332 EDMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPK 1391

Query: 1610 WKGPYRVKEKLQHGAYKL 1627
            + GPY++ ++    AYKL
Sbjct: 1392 YFGPYKIIDRCGEVAYKL 1409


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  201 bits (510), Expect = 4e-51
 Identities = 122/401 (30%), Positives = 199/401 (49%), Gaps = 6/401 (1%)

Query: 655  PVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTD 714
            P+ +   +M   +   + +++K L    FI     P W A  + VKK  G +R+C+DY +
Sbjct: 491  PLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRE 549

Query: 715  LNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYH 774
            LN    K+ YPLP ID L+D   G    S +D  SGY+QI +   D  KTAF T   ++ 
Sbjct: 550  LNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFE 609

Query: 775  YRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIR 834
            + VM FGL NA A F R M+++F   +   + ++IDD++V +   +   V L+ + +++R
Sbjct: 610  FVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLR 669

Query: 835  KFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLA 894
            +  +    +KC+F  +   FLG +++ +G+  +P+K +AI +   P N  E++   G   
Sbjct: 670  EQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAG 729

Query: 895  ALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFL 954
               RF+      A        K   F W+QEC+E F  +K+ LT+ P+L  P  G    +
Sbjct: 730  YYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMV 789

Query: 955  YLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPYFQ 1014
            Y   S   L  VL++      K I + SR L   E  Y   +    AVI   +  R Y  
Sbjct: 790  YTDASRVGLGCVLMQHG----KVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLY 845

Query: 1015 SHKVVIRTNY-PVKQILGKLDLAGRMLSWSVELSEYDIQFA 1054
              KV + T++  +K I  + +L  R   W   +++YD++ A
Sbjct: 846  GGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIA 886


>At2g10780 pseudogene
          Length = 1611

 Score =  201 bits (510), Expect = 4e-51
 Identities = 136/494 (27%), Positives = 242/494 (48%), Gaps = 18/494 (3%)

Query: 655  PVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTD 714
            P+ +   +M   +   + +++++L +  FI     P W A  + VKK  G +R+C+DY  
Sbjct: 659  PISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRG 717

Query: 715  LNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYH 774
            LN    K+ YPLP ID L+D   G +  S +D  SGY+QI ++P D  KTAF T   ++ 
Sbjct: 718  LNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFE 777

Query: 775  YRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIR 834
            + VM FGL NA A F + M+ +F + +   + ++I+D++V +   ++H   L+ + +++R
Sbjct: 778  FVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLR 837

Query: 835  KFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLA 894
            +  +    +KC+F  ++  FLG +++ +G+  +P+K ++I     P N  E++   G   
Sbjct: 838  EHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAG 897

Query: 895  ALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFL 954
               RF+      A        K   F W+ EC+++F ++K  LT  P+L  P +G    +
Sbjct: 898  YYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTV 957

Query: 955  YLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPYFQ 1014
            Y   S   L  VL+++       I + SR L+  E  Y   +    AV+   +  R Y  
Sbjct: 958  YTDASIVGLGCVLMQKG----SVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLY 1013

Query: 1015 SHKVVIRTNY-PVKQILGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQVLADFVVEFTS 1073
              KV I T++  +K I  + +L  R   W   +++Y++  A      +QV AD +    S
Sbjct: 1014 GAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQV-ADALSRRRS 1072

Query: 1074 PIQEAVPHVWLLSVDGSSNIKGSGAGIILEGPG-----DLL----IEQSLKFDFK--ASN 1122
             ++     V L+++ G+ ++      +   G G     DLL    + Q    + K  A N
Sbjct: 1073 EVEAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERDEEIKGWAQN 1132

Query: 1123 NQAEYEALIAGMLL 1136
            N+ EY+    G ++
Sbjct: 1133 NKTEYQTSNNGTIV 1146



 Score =  100 bits (249), Expect = 7e-21
 Identities = 93/345 (26%), Positives = 147/345 (41%), Gaps = 29/345 (8%)

Query: 1298 ELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPA 1357
            E +L E H+     H G   +   L R  Y+W  M  D   +V KC  CQ    +   P+
Sbjct: 1161 EEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAEHQVPS 1219

Query: 1358 NELTSVFSPWPFHKWG---VDIVGPFPQA-PGQLKFLIVDVDYFTKWVEAEAVS-KITAE 1412
              L ++  P P  KW    +D V   P     +   + V VD  TK     A+S K  AE
Sbjct: 1220 GLLQNL--PIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAE 1277

Query: 1413 RVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAES 1472
             + + Y  +I+   G+P  IV+D  T+F S     F K LG      +  HPQ + Q+E 
Sbjct: 1278 IIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSER 1337

Query: 1473 ANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDT 1532
              + + + ++  + D  G W + L  V ++Y+ +  ++ G +P+  +YG     P+   T
Sbjct: 1338 TIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL-CWT 1396

Query: 1533 PTWRREHFSEESNEVGIRCTMDMIDEVREAAHIREFAAKQRAARR---YNSKVIPRSMKE 1589
            P   R  F              ++DE  E     +   K+   R+    N +      + 
Sbjct: 1397 PVGERRLFGP-----------TIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQV 1445

Query: 1590 GDLVLKQVVAPTRIG------KLLPSWKGPYRVKEKLQHGAYKLE 1628
            GDLV  + +     G      KL P + GPY+V E++   AYKL+
Sbjct: 1446 GDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 1490


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  201 bits (510), Expect = 4e-51
 Identities = 127/414 (30%), Positives = 209/414 (49%), Gaps = 9/414 (2%)

Query: 655  PVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDYTD 714
            P+ +   +M   +   + ++++ L    FI     P W A  + VKK  G +R+C+DY  
Sbjct: 517  PLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRG 575

Query: 715  LNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYH 774
            LN    K+ YPLP ID L+D   G    S +D  SGY+QI +   D  KTAF T   ++ 
Sbjct: 576  LNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFE 635

Query: 775  YRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIR 834
            + VM F L NA A F R M+++F   +   + ++IDD++V +   + H V L+ + +++R
Sbjct: 636  FVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLR 695

Query: 835  KFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGRLA 894
            +  +    +KC+F  +   FLG +++ +G+  +P+K +AI +   P N  E++       
Sbjct: 696  EQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTG 755

Query: 895  ALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFL 954
               RF+      A        K   F W+ EC+E F  +K+ LT+ P+L  P  G    +
Sbjct: 756  YYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMV 815

Query: 955  YLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKL-RPYF 1013
            Y   S   L  VL+    +R K I + SR L+  E  Y     L +AV+I A K+ R Y 
Sbjct: 816  YTDASRVGLGCVLM----QRGKVIAYASRQLRKHEGNY-PTHDLEMAVVIFALKIWRSYL 870

Query: 1014 QSHKVVIRTNY-PVKQILGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQVLAD 1066
               KV + T++  +K I  + +L  R + W   +++YD++ A     K+ V+AD
Sbjct: 871  YGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPG-KANVVAD 923



 Score = 88.2 bits (217), Expect = 4e-17
 Identities = 122/542 (22%), Positives = 218/542 (39%), Gaps = 61/542 (11%)

Query: 1097 GAGIILEGPGDLLIEQSLKFDFKASNNQAEYEALIAGMLLAQEMGAKNLRARSDSQLMTN 1156
            G G +L   G ++   S +   K   N   ++  +A ++ A ++    L      Q+ T+
Sbjct: 823  GLGCVLMQRGKVIAYASRQLR-KHEGNYPTHDLEMAVVIFALKIWRSYLYG-GKVQVFTD 880

Query: 1157 QISGEYQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLASTKKPGNNRT 1216
              S +Y     +L+    R  +L  D+   E  Y P ++N  AD L++      PG +  
Sbjct: 881  HKSLKYIFNQPELNLRQMRWMELVADYDL-EIAYHPGKANVVADALSRKRVGAAPGQSVE 939

Query: 1217 VIQEVISAPSTDEKAVFELNQEPEGW-MTPLLKFLTGSFVAKNDEYAQLVRRRA--TKFV 1273
             +   I A       +  + +EP G         LT + +A+  +   +   +A  +++ 
Sbjct: 940  ALVSEIGA-----LRLCVVAREPLGLEAVDRADLLTRARLAQEKDEGLIAASKAEGSEYQ 994

Query: 1274 VIA-GKLYKRGRASPLLRCLGEGET--ELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWP 1330
              A G ++  GR      C+ + E     +L E H  +   H G   +   L R  Y W 
Sbjct: 995  FAANGTIFVYGRV-----CVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWV 1048

Query: 1331 RMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPGQLKFL 1390
             M  D   +V +CD CQ    +   P        + W                       
Sbjct: 1049 GMKRDVANWVAECDVCQLVKAEHQVPD-------AIW----------------------- 1078

Query: 1391 IVDVDYFTKWVEAEAVSKITAERVV-KFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFC 1449
             V +D  TK     A+ K     V+ K Y  +I+   G+P  IV+D  ++F  +    F 
Sbjct: 1079 -VIMDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQ 1137

Query: 1450 KQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHS 1509
             ++G + +  +  HPQ +GQ+E   + + + ++  + D  G WA+ L  V ++Y+ +  +
Sbjct: 1138 AKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQA 1197

Query: 1510 TTGETPFTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDMIDEVREAAHIREFA 1569
            + G  PF  +YG     P+       R  + ++   E   R  +  ++     A  R +A
Sbjct: 1198 SIGMAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYA 1257

Query: 1570 AKQRAARRYNSKVIPRSMKEGDLVLKQVVAPTRI---GKLLPSWKGPYRVKEKLQHGAYK 1626
             K+R  R    +V  R      L +  +  P R     KL P + GP+R+ E++   AY+
Sbjct: 1258 DKRR--RELEFEVGDRVY----LKMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYR 1311

Query: 1627 LE 1628
            LE
Sbjct: 1312 LE 1313


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  195 bits (496), Expect = 2e-49
 Identities = 117/374 (31%), Positives = 188/374 (49%), Gaps = 6/374 (1%)

Query: 694  ANTVLVKKASGKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQ 753
            A  + VKK  G +R+C+DY  LN    K+ YPLP ID L+D   G    S +D  SGY+ 
Sbjct: 504  APVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHL 563

Query: 754  IKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLV 813
            I +   D  KTAF T   ++ + VM FGL NA A F R M+++F   +   + ++IDD++
Sbjct: 564  IPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDIL 623

Query: 814  VKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQA 873
            V +   + H V L+ + +++R+  +    +KC+F  +   FLG +++ +G+  +P+K +A
Sbjct: 624  VYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEA 683

Query: 874  IINMRNPCNIREVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKI 933
            I +   P N  E++   G      RF+      A        K   F W+ EC+E F  +
Sbjct: 684  IRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSL 743

Query: 934  KQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQ 993
            K+ LT+ P+L  P  G    +Y   S   L  VL+    +R K I + SR L+  E  Y 
Sbjct: 744  KEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLM----QRGKVIAYASRQLRKHEGNYP 799

Query: 994  KIEKLALAVIITARKLRPYFQSHKVVIRTNY-PVKQILGKLDLAGRMLSWSVELSEYDIQ 1052
              +    AVI   +  R Y     V + T++  +K I  + +L  R   W   +++YD++
Sbjct: 800  THDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLE 859

Query: 1053 FAPRNNIKSQVLAD 1066
             A     K+ V+AD
Sbjct: 860  IAYHPG-KANVVAD 872



 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 16/303 (5%)

Query: 1333 AHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWG---VDIVGPFPQAPGQLKF 1389
            + D   +V +CD CQ    +   P   L S+  P P  KW    +D V   P +  +   
Sbjct: 940  SEDVANWVAECDVCQLVKAEHQVPGGMLQSL--PIPEWKWDFITIDFVVGLPVSRTKDAI 997

Query: 1390 LIVDVDYFTKWVEAEAVSKITAERVV-KFYWKKIICHFGLPKYIVTDNGTQFASSKVVNF 1448
             ++ VD  TK     A+ K     V+ K Y  +I+   G+P  IV+D  ++F S+    F
Sbjct: 998  WVI-VDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAF 1056

Query: 1449 CKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPH 1508
              ++G + +  +  HPQ  GQ+E   + + + ++  + D  G WA+ L  V ++Y+ +  
Sbjct: 1057 QAEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYP 1116

Query: 1509 STTGETPFTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDMIDEVREAAHIREF 1568
            ++ G  PF  +Y      P+ +     R  + ++   E   R  +  ++        R +
Sbjct: 1117 ASIGMAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSY 1176

Query: 1569 AAKQRAARRYNSKVIPRSMKEGDLVLKQVVAPTRI---GKLLPSWKGPYRVKEKLQHGAY 1625
            A K+R  R    +V  R      L +  +  P R     KL P + GP+R+ E++   AY
Sbjct: 1177 ADKRR--RELEFEVGDRVY----LKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAY 1230

Query: 1626 KLE 1628
            +LE
Sbjct: 1231 RLE 1233


>At1g35370 hypothetical protein
          Length = 1447

 Score =  195 bits (495), Expect = 2e-49
 Identities = 139/475 (29%), Positives = 233/475 (48%), Gaps = 19/475 (4%)

Query: 594  VIGPLPHQITKIGTSLSGLEEEILVQ-LLRENVDLFAWAPSDMPGIDIGVACHHLAVRTS 652
            V+     +I  I    S + EE +VQ ++ E  D+FA  P+D+P        H + +   
Sbjct: 520  VVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFA-EPTDLPPFR-EKHDHKIKLLEG 577

Query: 653  VKPVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKWRMCVDY 712
              PV QR  +    ++  +D+ V+ + ++  I ++    + +  VLVKK  G WR+CVDY
Sbjct: 578  ANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTI-QVSSSPFASPVVLVKKKDGTWRLCVDY 636

Query: 713  TDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKN 772
            T+LN    KD + +P I+ L+D   G    S +D  +GY+Q++MDP D  KTAF T+  +
Sbjct: 637  TELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGH 696

Query: 773  YHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQ 832
            + Y VM FGL NA ATFQ  M+++F + + + + V+ DD+++ +S  + H   L+ +F+ 
Sbjct: 697  FEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEV 756

Query: 833  IRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGR 892
            +R   +        F   + + LG  ++ + IE +P K QA+     P  +++V+   G 
Sbjct: 757  MRLHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGF 808

Query: 893  LAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGL 952
                 RF+   G  A    A + K + F W+ E   AF  +K  L   P+L  P      
Sbjct: 809  AGYYRRFVRNFGVIAGPLHA-LTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQF 867

Query: 953  FLYLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLRPY 1012
             +        + +VL+++      P+ ++SR LKG +L     EK  LA I   RK R Y
Sbjct: 868  MVETDACGQGIRAVLMQKG----HPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHY 923

Query: 1013 FQSHKVVIRTNY-PVKQILGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQVLAD 1066
                  +I+T+   +K +L +         W  +L E+D +   R   K  ++AD
Sbjct: 924  LLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQG-KENLVAD 977



 Score = 94.0 bits (232), Expect = 7e-19
 Identities = 104/451 (23%), Positives = 183/451 (40%), Gaps = 58/451 (12%)

Query: 1186 FEAIYVPRESNSRADLLAKLASTKKPGNNRTVIQEVISAPSTDEKAVFELNQEPEGWMTP 1245
            +E  Y   + N  AD L+++  ++       V+   +S    D     ++  E +G +  
Sbjct: 963  YEIQYRQGKENLVADALSRVEGSE-------VLHMALSIVECDFLKEIQVAYESDGVLKD 1015

Query: 1246 LLKFLTGSFVAKND-EYAQLVRRRATKFVVIAGKLYKRGRASPLLRCLGEGETELVLLEV 1304
            ++  L     AK    ++Q + RR +K +V+   +    +    L C G G         
Sbjct: 1016 IISALQQHPDAKKHYSWSQDILRRKSK-IVVPNDVEITNKLLQWLHCSGMGGRS------ 1068

Query: 1305 HEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVF 1364
                      GR  + + +++ +YW  M  D   F++ C  CQ+      A    L  + 
Sbjct: 1069 ----------GRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL- 1117

Query: 1365 SPWPFHKW---GVDIVGPFPQAPGQLKFLIVDVDYFTKWVEAEAVSK-ITAERVVKFYWK 1420
             P P   W    +D +   P + G+   ++V VD  +K     A++   +A  V + +  
Sbjct: 1118 -PIPDKIWCDVSMDFIEGLPNSGGKSVIMVV-VDRLSKAAHFVALAHPYSALTVAQAFLD 1175

Query: 1421 KIICHFGLPKYIVTDNGTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAESANKMIVND 1480
             +  H G P  IV+D    F S     F K  G+E +  S  HPQ++GQ E  N+ + N 
Sbjct: 1176 NVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENY 1235

Query: 1481 IKKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETPFTMVYGAD-----AMLPVEIDTPTW 1535
            ++        LW + L    + Y+T  HS++  TPF +VYG         LP +      
Sbjct: 1236 LRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVV 1295

Query: 1536 RREHFSEESNEVGIRCTMDMIDEVREAAHIREFAAKQRAARRYNSKVIPRSMKEGDLV-- 1593
             R     E+  + ++  +     +R    +++FA + R  R ++          GD V  
Sbjct: 1296 ARSLQERENMLLFLKFHL-----MRAQHRMKQFADQHRTERTFDI---------GDFVYV 1341

Query: 1594 ----LKQVVAPTRIG-KLLPSWKGPYRVKEK 1619
                 +Q     R+  KL P + GPY++ EK
Sbjct: 1342 KLQPYRQQSVVLRVNQKLSPKYFGPYKIIEK 1372


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  194 bits (493), Expect = 4e-49
 Identities = 134/505 (26%), Positives = 236/505 (46%), Gaps = 50/505 (9%)

Query: 605  IGTSLSGLEEEILVQLLRENVDLFAWAPSDMPGIDIGVACHHLAVRTSVKPVVQRKRKMG 664
            +   L+  +  +L+  L +      ++  D+ GI   +  H + +       ++ +R++ 
Sbjct: 849  VNDELTADQVNLLITELMKYRKAIGYSLDDIKGISPTLCTHRIHLENESYSSIEPQRRLN 908

Query: 665  EEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASGKW------------------ 706
               ++ V +E+ KL +A  I  I   TW++    V K  G                    
Sbjct: 909  PNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGH 968

Query: 707  RMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAF 766
            RMC++Y  LN+A  K+ +PLP IDH+++  + +    F+D+YSG+ QI + P D  KT F
Sbjct: 969  RMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTF 1028

Query: 767  MTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDL 826
                  + Y+ M FGL NA ATFQR M +IFS+ I   +EV++DD  V  S   S  ++L
Sbjct: 1029 TCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNL 1088

Query: 827  KEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREV 886
              + ++  + ++ LN  KC F V+ G  LG  ++++GIE +  K   ++ ++ P  ++++
Sbjct: 1089 CRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDI 1148

Query: 887  QQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRP 946
            +   G       F+      A      + K+ EF ++ EC  AF  IK+ L T PI+  P
Sbjct: 1149 RSFLGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAP 1208

Query: 947  TKGAGLFLYLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITA 1006
                                        + P   ++  +  A++RY   EK  LAV+   
Sbjct: 1209 NW--------------------------DFPFEIIT--MDDAQVRYATTEKELLAVVFAF 1240

Query: 1007 RKLRPYFQSHKVVIRTNY-PVKQILGKLDLAGRMLSWSVELSEYDIQFAPRNNIKSQV-- 1063
             K R Y    KV I T++  ++ I  K D   R+L W + L E+D++   +  I++ V  
Sbjct: 1241 EKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGVAD 1300

Query: 1064 -LADFVVEFTSPIQEAVPHVWLLSV 1087
             L+   +E    I +++P   L+++
Sbjct: 1301 HLSRMRIEDEVLIDDSMPEEQLMAI 1325



 Score =  165 bits (418), Expect = 2e-40
 Identities = 103/350 (29%), Positives = 171/350 (48%), Gaps = 39/350 (11%)

Query: 1291 CLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDCCEFVKKCDKCQRFS 1350
            C+ E E E +LL  H    G H       +K+L+AG++WP M  D  EF+ KCD  + F 
Sbjct: 1386 CVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFENFD 1445

Query: 1351 DKKNAPANELTSVFSPWPFHKWGVDIVGPFPQAPGQLKFLIVDVDYFTKWVEAEAVSKIT 1410
                                 WG+D +GPFP + G  K+++V +DY +KWVEA A     
Sbjct: 1446 --------------------VWGIDFMGPFPSSYGN-KYILVAIDYVSKWVEAIASHTND 1484

Query: 1411 AERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFCKQLGIETKFVSVIHPQANGQA 1470
            A  V+K +   I   FG+P+ +++D G  F +    N  K+ G++ K         +GQ 
Sbjct: 1485 ARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHK--------TSGQV 1536

Query: 1471 ESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEI 1530
            E +N+ I   ++K +   +  W+ +L++ LW+Y T   +  G TPF ++YG    LPVE+
Sbjct: 1537 EISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVEL 1596

Query: 1531 D-TPTW--RREHFSEESNEVGIRCTMDMIDEVREAAHIREFAAKQRAARRYNSKVIPRSM 1587
            +    W  +  +F  ++ E      ++ ++++R  A+      K+R    ++ K++ R  
Sbjct: 1597 EYKAMWAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDF 1656

Query: 1588 KEGDLVLKQVVAPTRI----GKLLPSWKGPYRVKEKLQHGAYKLEELSGN 1633
            K GD VL   +  +R+    GKL   W GP+ V     +GA  L   +G+
Sbjct: 1657 KVGDQVL---LFNSRLRLFPGKLKSRWSGPFSVTAVRPYGAITLAGKNGD 1703



 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 42/169 (24%), Positives = 70/169 (40%), Gaps = 17/169 (10%)

Query: 72  DPSEHVTVFNTRMSVYGV----ADSLKCKLLAGTLADAALRWYMSLPRFSIVGYQDLTKK 127
           DP +H+  F+   S+  +     D  K +L   +L D A +W  SLP+ SI  + D  K 
Sbjct: 61  DPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKA 120

Query: 128 FTQQFSGTRHRKVLSTSLFNVRQGPNESLREYLARFNDSTIKVSNPNQEVFVGAFQNG-- 185
           F  +F        L   +    Q  NE+  E   RF     +   P+ E+ +    NG  
Sbjct: 121 FLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKG--YQTQCPHHEMLLDTASNGNF 178

Query: 186 ----LRAG-QFNESLAQKPADSMEEIIARAECYVKGEESNAEKRARDVK 229
               +  G +  E+LAQ   +  E+     +  ++    + EK  R++K
Sbjct: 179 LNKDVEDGWEVVENLAQSDGNYNEDY----DRSIRTSSDSDEKHRREMK 223


>At1g36830 hypothetical protein
          Length = 243

 Score =  192 bits (489), Expect = 1e-48
 Identities = 99/233 (42%), Positives = 146/233 (62%), Gaps = 4/233 (1%)

Query: 1374 VDIVGPFPQAPGQ--LKFLIVDVDYFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKY 1431
            +D+VGP   + G+  LK L+V  DY TKW+EA+A  ++T ++V  F W+ I+C  G+P  
Sbjct: 1    MDVVGPMEASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIPYE 60

Query: 1432 IVTDNGTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGL 1491
            I+TDNGT   S K+  FC +  I     +  +PQ NGQAE+ANK I+++IKK L+  K +
Sbjct: 61   IITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKKSM 120

Query: 1492 WAEQLHEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRR--EHFSEESNEVGI 1549
            W++ LH VLW+Y TTP  +T ETPF++ YG +A++P+    P+ RR   H + + N   +
Sbjct: 121  WSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMNTQML 180

Query: 1550 RCTMDMIDEVREAAHIREFAAKQRAARRYNSKVIPRSMKEGDLVLKQVVAPTR 1602
            R  MD IDE R+ A IR    +Q   R YNS +  R  + G+LVL++V + TR
Sbjct: 181  RDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFSNTR 233


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,776,535
Number of Sequences: 26719
Number of extensions: 1733035
Number of successful extensions: 5055
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4634
Number of HSP's gapped (non-prelim): 310
length of query: 1638
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1525
effective length of database: 8,299,349
effective search space: 12656507225
effective search space used: 12656507225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)