BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141323.12 + phase: 0 /pseudo
(133 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24330 putative protein 176 3e-45
At5g09790 unknown protein 164 1e-41
At5g57260 cytochrome P450 29 0.63
At3g03750 unknown protein 28 1.4
At5g64560 unknown protein 28 1.8
At3g29380 transcription initiation factor IIB, putative 28 1.8
At1g08800 unknown protein 28 1.8
At5g60130 putative protein 27 2.4
At5g09690 unknown protein 27 2.4
At3g19640 unknown protein 27 3.1
At1g08150 hypothetical protein 27 4.1
At5g22350 unknown protein 26 5.3
At1g80900 unknown protein 26 5.3
At1g16010 unknown protein 26 5.3
At5g48600 chromosome condensation protein 25 9.1
At3g11210 unknown protein 25 9.1
At2g42750 unknown protein 25 9.1
>At5g24330 putative protein
Length = 349
Score = 176 bits (446), Expect = 3e-45
Identities = 88/126 (69%), Positives = 103/126 (80%), Gaps = 1/126 (0%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
VLSKE ETL L + MM+ GECP LMVVFD EG+TVEAD+ IKD T+I EYVGD+D+L
Sbjct: 192 VLSKEGVETLALCKKMMDLGECPPLMVVFDPYEGFTVEADRFIKDWTIITEYVGDVDYLS 251
Query: 68 NREYD-DGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFN 126
NRE D DGD +MTLL AS+PSQ LV+ PD+RSNIA FI+GI+NH+PEG KKQN+KCVRFN
Sbjct: 252 NREDDYDGDSMMTLLHASDPSQCLVICPDRRSNIARFISGINNHSPEGRKKQNLKCVRFN 311
Query: 127 IGGECR 132
I GE R
Sbjct: 312 INGEAR 317
>At5g09790 unknown protein
Length = 352
Score = 164 bits (416), Expect = 1e-41
Identities = 81/125 (64%), Positives = 94/125 (74%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
VL KED ETL +SM RGECP L+VVFD EGYTVEAD IKDLT I EY GD+D+LK
Sbjct: 196 VLCKEDLETLEQCQSMYRRGECPPLVVVFDPLEGYTVEADGPIKDLTFIAEYTGDVDYLK 255
Query: 68 NREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNI 127
NRE DD D IMTLL + +PS++LV+ PDK NI+ FI GI+NH P KKQN KCVR++I
Sbjct: 256 NREKDDCDSIMTLLLSEDPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSI 315
Query: 128 GGECR 132
GECR
Sbjct: 316 NGECR 320
>At5g57260 cytochrome P450
Length = 502
Score = 29.3 bits (64), Expect = 0.63
Identities = 18/67 (26%), Positives = 29/67 (42%)
Query: 15 ETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLKNREYDDG 74
E L + S P + + D G ++S++DL E + D+ KNRE +
Sbjct: 206 EALEMLGSFSASDFFPYVGWIVDWFTGLHARRERSVRDLDAFYEQMIDLHLQKNREESED 265
Query: 75 DRIMTLL 81
D + LL
Sbjct: 266 DFVDLLL 272
>At3g03750 unknown protein
Length = 354
Score = 28.1 bits (61), Expect = 1.4
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 20/108 (18%)
Query: 20 SRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLKNREYDDGDRIMT 79
S + ++G L +V D +G+ + AD+ IK I EY G++ D+ R
Sbjct: 181 SNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGEL-----LTTDEARRRQN 235
Query: 80 LLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNI 127
+ +QS A + + H P G C+R NI
Sbjct: 236 IYDKLRSTQS----------FASALLVVREHLPSG-----QACLRINI 268
>At5g64560 unknown protein
Length = 394
Score = 27.7 bits (60), Expect = 1.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 40 EGYTVEADKSIKDLTVIREYVGDIDFLKNREYDD 73
E Y ++ D ++ LT +REY+ D + N + D+
Sbjct: 286 EAYFMQIDSTLNRLTTLREYIDDTEDYINIQLDN 319
>At3g29380 transcription initiation factor IIB, putative
Length = 336
Score = 27.7 bits (60), Expect = 1.8
Identities = 21/79 (26%), Positives = 35/79 (43%)
Query: 6 SHVLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDF 65
S VLSK+D TL + + ++ E L+ F+ + T D I + E V D
Sbjct: 86 SSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQRMTDALDLDIVINSRACEIVSKYDG 145
Query: 66 LKNREYDDGDRIMTLLSAS 84
N + G ++ + +AS
Sbjct: 146 HANTKLRRGKKLNAICAAS 164
>At1g08800 unknown protein
Length = 1079
Score = 27.7 bits (60), Expect = 1.8
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 15 ETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLKNREYDDG 74
E L R M E+ E M VE +K I+DL EY D K + D
Sbjct: 908 EALQNLRMMEEQAEYD--MEAIQRLNDLLVEREKLIQDLEAEIEYFRDQTPQKKNKLDVA 965
Query: 75 DRIMTLLS----ASNPSQS-LVVFPDKRSNIAPFITGIDN 109
+++ + S SN QS LV F ++R I + I+N
Sbjct: 966 EKVTEMDSPSEGMSNKIQSCLVGFDEERLYITSCLEKIEN 1005
>At5g60130 putative protein
Length = 300
Score = 27.3 bits (59), Expect = 2.4
Identities = 26/93 (27%), Positives = 42/93 (44%), Gaps = 16/93 (17%)
Query: 37 DHAEGYTVEADKSIKDLTVIREYVGDI-----DFLK---NREY-----DDGDRIMTLLSA 83
D+A+ VE D + D + D+ D+++ +R++ DD D L
Sbjct: 138 DYADEAAVEKDDNDADDEDVDNVADDVPVEDDDYVEAFDSRDHAKADDDDEDERQYLDDR 197
Query: 84 SNPSQSLVVFPDKRSNI---APFITGIDNHTPE 113
NPS +L++ P K+S + A I D H PE
Sbjct: 198 ENPSFTLILNPKKKSQLLIPARVIKDYDLHFPE 230
>At5g09690 unknown protein
Length = 397
Score = 27.3 bits (59), Expect = 2.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 40 EGYTVEADKSIKDLTVIREYVGDIDFLKNREYDD 73
E Y ++ D ++ LT +REY+ D + N + D+
Sbjct: 289 EAYFMQIDSTLNKLTELREYIDDTEDYINIQLDN 322
>At3g19640 unknown protein
Length = 484
Score = 26.9 bits (58), Expect = 3.1
Identities = 15/53 (28%), Positives = 25/53 (46%)
Query: 40 EGYTVEADKSIKDLTVIREYVGDIDFLKNREYDDGDRIMTLLSASNPSQSLVV 92
E Y V+ D + L+ +REYV D + N DD + + + +LV+
Sbjct: 374 EAYFVQIDGILNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVM 426
>At1g08150 hypothetical protein
Length = 815
Score = 26.6 bits (57), Expect = 4.1
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 2 QVCISHVLSKEDFETLNLSRSMMERGECPL--LMVVFDHAEGYTVEADKSIKDLTVIREY 59
+VC V K+D E L L R MM L L ++ +G T D+ + D ++E
Sbjct: 661 EVCAIFVGGKDDREALALGRQMMRNPNVNLTVLKLIPAKMDGMTTGWDQML-DSAEVKEV 719
Query: 60 VGD----------IDFLKNREYDDGDRIMTLLSASNPSQSLVV 92
+ + +++++ D D LLS +N VV
Sbjct: 720 LRNNNNTVGQHSFVEYVEETVNDGSDTSTLLLSIANSFDLFVV 762
>At5g22350 unknown protein
Length = 427
Score = 26.2 bits (56), Expect = 5.3
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 30 PLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLKNREY 71
P+ +V DH + E KS+++ V+R + G D ++ Y
Sbjct: 360 PVYVVGADHCKWKIAEFQKSLRERGVVRSFTGFEDMSESWSY 401
>At1g80900 unknown protein
Length = 443
Score = 26.2 bits (56), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 40 EGYTVEADKSIKDLTVIREYVGDIDFLKNREYDD 73
E Y V D ++ LT ++EY+ D + N + D+
Sbjct: 336 EAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDN 369
>At1g16010 unknown protein
Length = 442
Score = 26.2 bits (56), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 40 EGYTVEADKSIKDLTVIREYVGDIDFLKNREYDD 73
E Y V D ++ LT ++EY+ D + N + D+
Sbjct: 335 EAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDN 368
>At5g48600 chromosome condensation protein
Length = 1241
Score = 25.4 bits (54), Expect = 9.1
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 44 VEADKSIKDLTVIREYVGD--------IDFLKNREYDDGDRIMTLLSASNPSQSLVVFP 94
++A K+++++ YV D I L+N ++ DR++ + N ++S+ + P
Sbjct: 1172 IDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINP 1230
>At3g11210 unknown protein
Length = 256
Score = 25.4 bits (54), Expect = 9.1
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 55 VIREYVGDIDFLKNREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEG 114
++R Y G + +R + D++ +A PS +V F S +AP +G+ H P
Sbjct: 41 ILRGYYG---WNSSRALEVVDQVFPKDAAVQPSLVIVYFGGNDS-MAPHSSGLGPHVPLT 96
Query: 115 NKKQNMKCVRFNI 127
NMK + ++
Sbjct: 97 EYVDNMKKIALHL 109
>At2g42750 unknown protein
Length = 344
Score = 25.4 bits (54), Expect = 9.1
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 3/55 (5%)
Query: 9 LSKEDFETLNLSRSMMERGEC---PLLMVVFDHAEGYTVEADKSIKDLTVIREYV 60
LS D ET N + + E P+ +V+D GYTV A D + R++V
Sbjct: 107 LSGNDPETTNFCMFINDIYEILSDPVQRMVYDEIHGYTVTAINPFLDDSTPRDHV 161
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,961,383
Number of Sequences: 26719
Number of extensions: 107918
Number of successful extensions: 243
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 17
length of query: 133
length of database: 11,318,596
effective HSP length: 88
effective length of query: 45
effective length of database: 8,967,324
effective search space: 403529580
effective search space used: 403529580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC141323.12