BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141115.10 + phase: 0 /pseudo
         (173 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g22130 unknown protein                                              92  1e-19
At1g77460 unknown protein                                              51  4e-07
At1g44120 hypothetical protein                                         44  4e-05
At1g28380 unknown protein                                              27  5.5
At1g13650 hypothetical protein                                         27  5.5

>At2g22130 unknown protein
          Length = 2048

 Score = 92.0 bits (227), Expect = 1e-19
 Identities = 55/87 (63%), Positives = 60/87 (68%), Gaps = 10/87 (11%)

Query: 13   MDALFLLIQGWSACPVEVSRDQSNAAAYAIPLLQNLIQFGPVLFFEKAEFI-------LV 65
            +DALFLL Q WSACP EVSR QS AAA AIPLLQ LIQ GP  F EKAEF+       LV
Sbjct: 1922 LDALFLLRQAWSACPAEVSRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLV 1981

Query: 66   MIVKRGNNMRQCVGNQG---KITLEAN 89
            + +KRGNNM+Q VGN     KITL  N
Sbjct: 1982 VTIKRGNNMKQSVGNPSVFCKITLGNN 2008


>At1g77460 unknown protein
          Length = 2110

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 46/179 (25%), Positives = 77/179 (42%), Gaps = 42/179 (23%)

Query: 13   MDALFLLIQGWSACPVEVSRDQSNAAAYAIPLLQNLIQFGPVLFFEKAEFI-------LV 65
            +D L+LL   W+   ++V++ Q+  AA AIP+LQ L++  P  F +KA+ +       L 
Sbjct: 1926 LDILYLLRHSWTNMSIDVAKSQAMIAAEAIPVLQMLMKTCPPRFHDKADSLLHCLPGCLT 1985

Query: 66   MIVKRGNNMRQ---------------CVGNQGKITLEA-NQEWDERFTY---------MV 100
            + V R NN++Q               C   Q K+   +   EW E FT+          +
Sbjct: 1986 VNVMRANNLKQSMATTNAFCQLTIGNCPPRQTKVVSNSTTPEWKEGFTWAFDVPPKGQKL 2045

Query: 101  L*ECSSRT--------EASYLLQKQA*SGKADEHTLL--PTSKSGQPRNLEVELKWSNK 149
               C S++          +  + K    G+      L    SK    R+L++E+ WSN+
Sbjct: 2046 HIICKSKSTFGKTTLGRVTIQIDKVVTEGEYSGSLSLNHENSKDASSRSLDIEIAWSNR 2104


>At1g44120 hypothetical protein
          Length = 2114

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 31/112 (27%), Positives = 53/112 (46%), Gaps = 24/112 (21%)

Query: 11   SWMDALFLLIQGWSACPVEVSRDQSNAAAYAIPLLQNLIQF-----GPVLFFEKAEFI-- 63
            S MD ++ L Q W+  P E +R Q+  AA AIP+LQ +++       P  F E+   +  
Sbjct: 1930 SAMDTIYTLRQSWTTMPTETARSQAVLAADAIPVLQLMMKSKLKSPAPSSFHERGNSLLN 1989

Query: 64   -----LVMIVKRGNNMRQ-----------CVGNQGKITLEANQE-WDERFTY 98
                 L + +KRG+N+++           C   + K+   ++   W E FT+
Sbjct: 1990 CLPGSLTVAIKRGDNLKRSNAFCRLIIDNCPTKKTKVVKRSSSPVWKESFTW 2041


>At1g28380 unknown protein
          Length = 612

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 28  VEVSRDQSNAAAYA-IPLLQNLIQFGPVLFFEKAEFILVMIVKRGNNMRQCVGNQGKITL 86
           V+    +S A+ Y+  P  +NL+Q+G   F       +VM  K    MR C+   G    
Sbjct: 221 VDPVESKSPASVYSGKPKEENLLQWGLQPFGTSVSSAVVMHTKNEEIMRVCIRRGGVDLG 280

Query: 87  EANQEW 92
           ++++ W
Sbjct: 281 QSHERW 286


>At1g13650 hypothetical protein
          Length = 281

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 14/64 (21%), Positives = 33/64 (50%)

Query: 28  VEVSRDQSNAAAYAIPLLQNLIQFGPVLFFEKAEFILVMIVKRGNNMRQCVGNQGKITLE 87
           + +  D ++A+++A+P+LQ+     PV   +  E  L M++     +R+    + ++  E
Sbjct: 147 LSIRSDGTSASSFALPILQSEWNSSPVRMGKAEETQLRMVIAEERKVRKDKAEKTQLRKE 206

Query: 88  ANQE 91
             +E
Sbjct: 207 KAEE 210


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.328    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,656,764
Number of Sequences: 26719
Number of extensions: 132660
Number of successful extensions: 292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 9
length of query: 173
length of database: 11,318,596
effective HSP length: 92
effective length of query: 81
effective length of database: 8,860,448
effective search space: 717696288
effective search space used: 717696288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)