BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.8 - phase: 0 /pseudo
(779 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 500 e-141
At3g31970 hypothetical protein 499 e-141
At4g16910 retrotransposon like protein 474 e-134
At2g07660 putative retroelement pol polyprotein 474 e-133
At2g04670 putative retroelement pol polyprotein 444 e-125
At4g07830 putative reverse transcriptase 433 e-121
At2g14650 putative retroelement pol polyprotein 410 e-114
At1g36120 putative reverse transcriptase gb|AAD22339.1 357 2e-98
At3g29490 hypothetical protein 303 2e-82
At1g36590 hypothetical protein 292 4e-79
At3g11970 hypothetical protein 291 1e-78
At4g03840 putative transposon protein 264 2e-70
At1g35370 hypothetical protein 251 8e-67
At2g06470 putative retroelement pol polyprotein 233 2e-61
At3g31480 hypothetical protein 202 8e-52
At4g07850 putative polyprotein 201 1e-51
At2g14640 putative retroelement pol polyprotein 165 1e-40
At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein 159 7e-39
At4g10580 putative reverse-transcriptase -like protein 137 2e-32
At2g05610 putative retroelement pol polyprotein 119 6e-27
>At2g10780 pseudogene
Length = 1611
Score = 500 bits (1288), Expect = e-141
Identities = 252/527 (47%), Positives = 356/527 (66%), Gaps = 8/527 (1%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKID-SEFLKSI 309
KAN VADALSR+ + A + +L+ + V + + LG+ D ++ L I
Sbjct: 1059 KANQVADALSRRRSEVEAER-SQVDLVNMMGTLH-VNALSKEVEPLGLGAADQADLLSRI 1116
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+ AQ D + + Q +++ + G + GR+C+P++ +K+ IL E+H+S
Sbjct: 1117 RLAQERDEE----IKGWAQNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKF 1172
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPG+ KMY DLK+ + G+K+DVA++V C CQ K EHQ P+G++ L + EWKW
Sbjct: 1173 SIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKW 1232
Query: 430 DSISMDFVTSLPNTPRGS-DAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHG 488
D I+MDFVT LP + +A+WV+VDRLTKSAHF+ I+ +AE YI EIV+LHG
Sbjct: 1233 DHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHG 1292
Query: 489 VPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLE 548
+P SIVSDRD RFTS+FWK+ Q+ALG+++ LS+AYHPQTD QSERTIQ+LED+LR CVL+
Sbjct: 1293 IPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLD 1352
Query: 549 QGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQT 608
GG W+ +L L+EF YNNS+ +SIGM+ +EALYGR CRTPLCW ER + GP IV +T
Sbjct: 1353 WGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDET 1412
Query: 609 TEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKF 668
TE+++ ++ K+K +Q RQKSY +KRRK+LEF+ GD ++L+ G GR KKL+P++
Sbjct: 1413 TERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRY 1472
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
+GPY ++ERVG VAY++ LPP L+ HNVFHVSQLRK + D ++ +++N+TVE
Sbjct: 1473 VGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVE 1532
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
P+RI DR K RGK L++V+W+ E TWE E+KM ++P
Sbjct: 1533 AWPVRIMDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANFP 1579
>At3g31970 hypothetical protein
Length = 1329
Score = 499 bits (1284), Expect = e-141
Identities = 259/528 (49%), Positives = 359/528 (67%), Gaps = 20/528 (3%)
Query: 251 KANVVADALSRKTLHMSA-MMVREFELLEQFRDMSLVCEWTPQSVKLGMLKID-SEFLKS 308
KANVVADALSRK + S +V E L +C + LG+ +D ++ L
Sbjct: 808 KANVVADALSRKRVGGSVEALVSEIGALR-------LCVMAQEP--LGLEAVDRADLLTR 858
Query: 309 IKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSS 368
++ AQ D + L+A + + +++ G + GR+C+P +EE+++ IL E+H S
Sbjct: 859 VRLAQEKD----EGLIAASKADGSEYQFAANGTILVHGRVCVPKDEELRREILSEAHASM 914
Query: 369 LSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWK 428
SIHP ATKMY DLK+ + G+KRDVA +V C VCQ K EHQ P G++ L +LEWK
Sbjct: 915 FSIHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVPGGLLQSLPILEWK 974
Query: 429 WDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHG 488
WD I+MDFV LP R DAIWVIVDRLTKSAHFL I + LA+ Y+ EIV+LHG
Sbjct: 975 WDFITMDFVVGLP-VSRTKDAIWVIVDRLTKSAHFLAIRKTDGAVLLAKKYVSEIVELHG 1033
Query: 489 VPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLE 548
VP SIVSDRD +FTS FW++ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+LR+CVL+
Sbjct: 1034 VPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLD 1093
Query: 549 QGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQT 608
+GG W HL L+EF YNNSY +SI MA FEALYGR CRTPLCW + ER + G + V +T
Sbjct: 1094 RGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERSIYGADYVLET 1153
Query: 609 TEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKF 668
TE++++++ MK +Q RQ+SY DKRR++LEF+ GD ++L++ + G R++ KLTP++
Sbjct: 1154 TERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLTPRY 1213
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
+GP+ I+ERVG VAYR+ LP + H VFHVS LRK + V+ ++ N+T+E
Sbjct: 1214 MGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKILEDLQPNMTLE 1273
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWS--GATGESLTWELESKMLESY 774
P+RI +R++K LR K+IPL++V+W+ G T E TWE E++M S+
Sbjct: 1274 ARPVRILERRIKELRRKKIPLIKVLWNCDGVTEE--TWEPEARMKASF 1319
>At4g16910 retrotransposon like protein
Length = 687
Score = 474 bits (1221), Expect = e-134
Identities = 243/528 (46%), Positives = 346/528 (65%), Gaps = 18/528 (3%)
Query: 251 KANVVADALSRKTLHMSAM--MVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKS 308
KAN V DALSR + A V ++ +L E P ++ ++ L
Sbjct: 151 KANQVVDALSRLRTVVEAERNQVNLVNMMGTLHLNALSKEVEPLGLRAAN---QADLLSR 207
Query: 309 IKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSS 368
I+ AQ D + + Q +++ + G + GR+C P+++ +K+ IL+E+H+S
Sbjct: 208 IRSAQERDEE----IKGWAQNNKTEYQSSNNGTIVVNGRVCGPNDKALKEEILKEAHQSK 263
Query: 369 LSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWK 428
SIHPG+ KMY DLK+ + G+K+DVA++V +K EHQ P+GM+ L + EWK
Sbjct: 264 FSIHPGSNKMYRDLKRYYHWVGMKKDVARWV--------AKEEHQVPSGMLQNLPIPEWK 315
Query: 429 WDSISMDFVTSLPNTPRGS-DAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLH 487
WD I MDFVT LP + +A+WV+VDRLTKSAHF+ I+ +AE YI EIV+LH
Sbjct: 316 WDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDAAEIIAEKYIDEIVRLH 375
Query: 488 GVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVL 547
G+P SIVSDRD RFTS+FWK Q+ LG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL
Sbjct: 376 GIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVL 435
Query: 548 EQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQ 607
+ GG W+ +L L+EF YNNS+ +SIGM+ +EALYGR RTPLCW ER + GP +V +
Sbjct: 436 DWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDE 495
Query: 608 TTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPK 667
TT+K++ ++ K+K +Q RQKSY +KRRK+LEF+ GD ++L+ G GR KKL P+
Sbjct: 496 TTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPR 555
Query: 668 FIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTV 727
++GPY ++ERVG VAY++ LPP L HNVFHVSQLRK + + ++ +++N+TV
Sbjct: 556 YVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTV 615
Query: 728 ETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
E P+RI D+ K RGK + L++++W+ E TWE E+KM ++P
Sbjct: 616 EAWPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFP 663
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 474 bits (1219), Expect = e-133
Identities = 229/456 (50%), Positives = 324/456 (70%), Gaps = 7/456 (1%)
Query: 299 LKIDSEFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKK 358
LKI +L + + + +++K L ++TE ++ + G + GR+C+P++ +K+
Sbjct: 500 LKIWRSYLIRLAQERDEEIKGWTL---NNKTE---YQTSNNGTIVVNGRVCVPNDRALKE 553
Query: 359 MILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGM 418
IL E+H+S SIHPG+ KMY DLK+ + G+++DVA++V C CQ K EHQ P+G+
Sbjct: 554 EILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRKDVARWVAKCPTCQLVKAEHQVPSGL 613
Query: 419 MVPLDVLEWKWDSISMDFVTSLPNTPRGS-DAIWVIVDRLTKSAHFLPINISFPVAQLAE 477
+ L + EWKWD I+MDFVT LP + +A+WV+VDRLTKSAHF+ I+ +AE
Sbjct: 614 LQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAE 673
Query: 478 IYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQS 537
YI EI++LHG+P SIVSDRD RFTS+FW + Q+ALG+++ LS+AYHPQTDGQSERTIQ+
Sbjct: 674 KYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQT 733
Query: 538 LEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDER 597
LED+LR CVL+ GG W+ +L LIEF YNNS+ +SIGM+ +EALYGR CRTPLCW ER
Sbjct: 734 LEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGER 793
Query: 598 VVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGR 657
+ GP IV +TTE+++ ++ K+K +Q RQKSY +KRRK+LEF+ GD ++L+ G GR
Sbjct: 794 RLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGR 853
Query: 658 ALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSD 717
KKL+P+++GPY ++ERVG VAY++ LPP L+ HNVFHVSQLRKY+ D ++
Sbjct: 854 FTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDI 913
Query: 718 DVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVV 753
+++N+TVE P+RI DR K RGK L++V+
Sbjct: 914 PPGLKENMTVEAWPVRIMDRMSKGTRGKSRDLLKVL 949
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 444 bits (1143), Expect = e-125
Identities = 240/523 (45%), Positives = 335/523 (63%), Gaps = 45/523 (8%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKID-SEFLKSI 309
KANVVADALSRK + A + E L +C + LG+ +D ++ L
Sbjct: 917 KANVVADALSRK--RVGAAPGQSVEALVSEIGALRLCVVAREP--LGLEAVDRADLLTRA 972
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+ AQ D + L+A + E +++ G + GR+C+P +EE+++ IL E+H S
Sbjct: 973 RLAQEKD----EGLIAASKAEGSEYQFAANGTIFVYGRVCVPKDEELRREILSEAHASMF 1028
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPGATKMY DLK+ + G+KRDVA +V C VCQ K EHQ P
Sbjct: 1029 SIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVP-------------- 1074
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
DAIWVI+DRLTKSAHFL I + A LA+ Y+ EIVKLHGV
Sbjct: 1075 ------------------DAIWVIMDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGV 1116
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
P SIVSDRD +FT FW++ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+LR+CVL+
Sbjct: 1117 PVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDW 1176
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
GG W HL L+EF YNNSY +SIGMA FEALYGR C TPL W + +ER + G + VQ+TT
Sbjct: 1177 GGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETT 1236
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFI 669
E++++++ MK +Q+RQ+SY DKRR++LEF+ GD ++L++ + G R++ KL+P+++
Sbjct: 1237 ERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYM 1296
Query: 670 GPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVET 729
GP+ I+ERVG VAYR+ LP + H VFHV LRK + V+ ++ N+T+E
Sbjct: 1297 GPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHKDDEVLVKIPEDLQPNMTLEA 1356
Query: 730 LPLRIDDRKVKTLRGKEIPLVRVVW--SGATGESLTWELESKM 770
P+R+ +R++K LR K+IPL++V+W G T E TWE E++M
Sbjct: 1357 RPVRVLERRIKELRRKKIPLIKVLWDCDGVTEE--TWEPEARM 1397
>At4g07830 putative reverse transcriptase
Length = 611
Score = 433 bits (1113), Expect = e-121
Identities = 240/525 (45%), Positives = 335/525 (63%), Gaps = 39/525 (7%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLE--QFRDMSLVCEWTPQSVKLGMLKID-SEFLK 307
KANVV DALSRK + + E ++E R ++ E LG+ +D ++ L
Sbjct: 71 KANVVTDALSRKRVGAAPGQSVETLVIEIGALRLCAVARE------PLGLEAVDQTDLLS 124
Query: 308 SIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRS 367
++ AQ D + L+A + E +++ G + GR+C+P ++E+++ IL E+H S
Sbjct: 125 RVQLAQEKD----EGLIAASKAEGFEYQFAANGTILVHGRVCVPKDKELRQEILSEAHAS 180
Query: 368 SLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEW 427
SIHPGATKMY DLK+ + G+KRDV +V C VCQ K+EHQ ++ L + EW
Sbjct: 181 MFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQLVKIEHQVSGSLLQSLPIPEW 240
Query: 428 KWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLH 487
KWD I+MDFV LP R DAIWVIVDRLTKSAHFL I + A LA+ Y+ EIVKLH
Sbjct: 241 KWDFITMDFVVGLP-VSRTKDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLH 299
Query: 488 GVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVL 547
GVP SIVSDRD +FTS FW++ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+LR+CVL
Sbjct: 300 GVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVL 359
Query: 548 EQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQ 607
+ G W HL L+EF YNNSY +SIGMA FE LYGR CRT LCW + ER + G + VQ+
Sbjct: 360 DWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRT-LCWTQVGERSIYGADYVQE 418
Query: 608 TTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPK 667
TE++++++ MK +Q+RQ+SY DKRRK+LEF+ GD ++ G +S+
Sbjct: 419 ITERIRVLKLNMKEAQNRQRSYADKRRKELEFEVGD-------SVSQDGHVARSE----- 466
Query: 668 FIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTV 727
+RVG VA+R+ L + H VFHVS LRK + V+ ++ N+T+
Sbjct: 467 --------QRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTL 518
Query: 728 ETLPLRIDDRKVKTLRGKEIPLVRVV--WSGATGESLTWELESKM 770
E P+R+ +R++K LR K+IPL++V+ G T E TWE E+++
Sbjct: 519 EARPVRVLERRIKELRRKKIPLIKVLRNCDGVTEE--TWEPEARL 561
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 410 bits (1055), Expect = e-114
Identities = 203/379 (53%), Positives = 273/379 (71%), Gaps = 5/379 (1%)
Query: 394 DVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVI 453
DVA +V C VCQ K EHQ P GM+ L + EWKWD I++DFV LP R DAIWVI
Sbjct: 942 DVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLP-VSRTKDAIWVI 1000
Query: 454 VDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEAL 513
VDRLTKSAHFL I + A LA+ Y+ EIVKLHGVP SIVSDRD +FTS FW++ Q +
Sbjct: 1001 VDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEM 1060
Query: 514 GSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIG 573
G+K+++S+AYHPQT GQSERTIQ+LED+LR+CVL+ GG W HL L+EF YNNSY +SIG
Sbjct: 1061 GTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIG 1120
Query: 574 MASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKR 633
MA FEALY R CRTPLC + ER + G + VQ+TTE++++++ MK +Q RQ+SY DKR
Sbjct: 1121 MAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKR 1180
Query: 634 RKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSN 693
R++LEF+ GD ++L++ + G R++ KL+P+++GP+ I+ERVG VAYR+ LP +
Sbjct: 1181 RRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMRA 1240
Query: 694 LHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVV 753
H VFHVS LRK + V+ ++ N+T+E P+R+ +R++K LR K+IPL++V+
Sbjct: 1241 FHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVL 1300
Query: 754 W--SGATGESLTWELESKM 770
W G T E TWE E++M
Sbjct: 1301 WDCDGVTKE--TWEPEARM 1317
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 357 bits (915), Expect = 2e-98
Identities = 189/433 (43%), Positives = 263/433 (60%), Gaps = 72/433 (16%)
Query: 340 GVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFV 399
G + R+C+P +EE+++ IL E+H S SIHPGATKMY DLK+ + G+KRDVA +V
Sbjct: 859 GTILVHERVCLPKDEELRREILSEAHASMFSIHPGATKMYRDLKRHYQWVGMKRDVANWV 918
Query: 400 YSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTK 459
C VCQ K EHQ P G++ L + EWK T
Sbjct: 919 TECDVCQLVKAEHQVPGGLLQSLPISEWK----------------------------KTD 950
Query: 460 SAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRL 519
A LP + Y+ EIVKLHGVP SI+S RD +FTS FW++ Q +G+K+++
Sbjct: 951 GAAVLP-----------KKYVSEIVKLHGVPVSILSHRDSKFTSAFWRAFQVEMGTKVQM 999
Query: 520 SSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEA 579
S+AYHPQTDGQSERTIQ+LED+L++CVL+ GG W HL L++F YNNSY +SIGMA FEA
Sbjct: 1000 STAYHPQTDGQSERTIQTLEDMLQMCVLDWGGHWADHLSLVKFAYNNSYQASIGMAPFEA 1059
Query: 580 LYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEF 639
LYGR CRT LCW + E+ + G + VQ+TTE++++++ MK +Q RQ+SY DKRR++LEF
Sbjct: 1060 LYGRPCRTLLCWTQVGEKSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKRRRELEF 1119
Query: 640 KEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFH 699
+ G I+ERVG VAYR+ LP + HNVFH
Sbjct: 1120 EVGT-----------------------------EIVERVGPVAYRLELPDVMRAFHNVFH 1150
Query: 700 VSQLRKYVPDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVW--SGA 757
VS LRK + V+ ++ N+T+E P+R+ +R++K +R K+IP+++V+W G
Sbjct: 1151 VSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKEVRRKKIPMIKVLWDCDGV 1210
Query: 758 TGESLTWELESKM 770
T E TWE E+++
Sbjct: 1211 TEE--TWEPEARI 1221
>At3g29490 hypothetical protein
Length = 438
Score = 303 bits (776), Expect = 2e-82
Identities = 163/382 (42%), Positives = 231/382 (59%), Gaps = 57/382 (14%)
Query: 391 LKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAI 450
+KRDVA +V C VCQ K EHQ P GM+ L + EW NT
Sbjct: 1 MKRDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEW--------------NT------- 39
Query: 451 WVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQ 510
FL I + A LA+ Y+ EIVKLHGVP+
Sbjct: 40 ------------FLAIRKTDGAAVLAKKYVSEIVKLHGVPAE------------------ 69
Query: 511 EALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHS 570
+G+K+++S+ YHPQTDGQ ERTIQ+LED+LR+CVL+ GG W HL L+EF YNNSY +
Sbjct: 70 --MGTKVQMSTPYHPQTDGQFERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQA 127
Query: 571 SIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYH 630
IGMA FEALYGR CRTPLCW + ER + G + VQ+TTE++++++ MK +Q RQ SY
Sbjct: 128 GIGMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQWSYA 187
Query: 631 DKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPH 690
DKRR++LEF+ GD ++L++ + G R++ KL+ +++GP+ I+ERVG VAY + LP
Sbjct: 188 DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERVGPVAYMLELPDV 247
Query: 691 LSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLV 750
+ H VFHVS LRK + V+ ++ N+T+E +R+ +R++K L+ K+I L+
Sbjct: 248 MRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARQVRVLERRIKELQRKKISLI 307
Query: 751 RVVW--SGATGESLTWELESKM 770
+V+W G T E TW+ E++M
Sbjct: 308 KVLWDCDGVTEE--TWQPEARM 327
>At1g36590 hypothetical protein
Length = 1499
Score = 292 bits (748), Expect = 4e-79
Identities = 172/527 (32%), Positives = 280/527 (52%), Gaps = 33/527 (6%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIK 310
K NVVADALSR V E+L + M ++ + LK I+
Sbjct: 1000 KENVVADALSR---------VEGSEVLH-----------------MAMTVVECDLLKDIQ 1033
Query: 311 EAQRDDVKFVDLLVARDQTEDIDFKID-DQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+D + D++ A + D Q +LR + +I +P N+ IK IL H S +
Sbjct: 1034 AGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGV 1093
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
H G + +K +F+ G+ +D+ ++ SC CQ+ K + G++ PL + + W
Sbjct: 1094 GGHSGRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIW 1153
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
+SMDF+ LP G I V+VDRL+K+AHF+ ++ + +A+ Y+ + KLHG
Sbjct: 1154 SEVSMDFIEGLP-VSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGC 1212
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
P+SIVSDRD FTS FW+ G L+L+SAYHPQ+DGQ+E + LE LR ++
Sbjct: 1213 PTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDR 1272
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
W L L E+ YN +YHSS M FE +YG+ L + + +V + +Q+
Sbjct: 1273 PQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQERE 1332
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALK-SKKLTPKF 668
+ + ++ + +Q R K + D+ R + EF+ GD++++++ P ++ ++KL+PK+
Sbjct: 1333 DMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKY 1392
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
GPY I++R G VAY++ LP + S +H VFHVSQL+ V + S + V ++D E
Sbjct: 1393 FGPYKIIDRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQD--VFE 1448
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
+P ++ +RK+ +GK + V V WS E TWE + +++P
Sbjct: 1449 KVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFP 1495
>At3g11970 hypothetical protein
Length = 1499
Score = 291 bits (744), Expect = 1e-78
Identities = 172/527 (32%), Positives = 279/527 (52%), Gaps = 33/527 (6%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIK 310
K NVVADALSR V E+L + M ++ + LK I+
Sbjct: 1000 KENVVADALSR---------VEGSEVLH-----------------MAMTVVECDLLKDIQ 1033
Query: 311 EAQRDDVKFVDLLVARDQTEDIDFKID-DQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+D + D++ A + D Q +LR + +I +P N+ IK IL H S +
Sbjct: 1034 AGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGV 1093
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
H G + +K +F+ G+ +D+ ++ SC CQ+ K + G++ PL + + W
Sbjct: 1094 GGHSGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIW 1153
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
+SMDF+ LP G I V+VDRL+K+AHF+ ++ + +A Y+ + KLHG
Sbjct: 1154 SEVSMDFIEGLP-VSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGC 1212
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
P+SIVSDRD FTS FW+ G L+L+SAYHPQ+DGQ+E + LE LR ++
Sbjct: 1213 PTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDR 1272
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
W L L E+ YN +YHSS M FE +YG+ L + + +V + +Q+
Sbjct: 1273 PQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQERE 1332
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALK-SKKLTPKF 668
+ + ++ + +Q R K + D+ R + EF+ GD++++++ P ++ ++KL+PK+
Sbjct: 1333 DMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKY 1392
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
GPY I++R G VAY++ LP + S +H VFHVSQL+ V + S + V ++D E
Sbjct: 1393 FGPYKIIDRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQD--VFE 1448
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
+P ++ +RK+ +GK + V V WS E TWE + +++P
Sbjct: 1449 KVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFP 1495
>At4g03840 putative transposon protein
Length = 973
Score = 264 bits (674), Expect = 2e-70
Identities = 128/270 (47%), Positives = 180/270 (66%), Gaps = 19/270 (7%)
Query: 505 FWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTY 564
FWK+ Q+ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR C L+ GG W+ +L L
Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL----- 744
Query: 565 NNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQS 624
ALYGR CRTPLCW ER + GP IV +TTE+++ ++ K+K +Q
Sbjct: 745 --------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790
Query: 625 RQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYR 684
RQKSY +KRRK+LEF+ D ++L+ G GR KKL+P+++GPY ++ERVG VAY+
Sbjct: 791 RQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYK 850
Query: 685 VGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRG 744
+ LPP L+ HNVFHVSQLRK + + ++ +++N+TVE P++I DR K RG
Sbjct: 851 LDLPPKLNAFHNVFHVSQLRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRG 910
Query: 745 KEIPLVRVVWSGATGESLTWELESKMLESY 774
K L++V+W+ E TWE E+KM ++
Sbjct: 911 KSRDLLKVLWNCGGREQYTWETENKMKANF 940
Score = 120 bits (302), Expect = 2e-27
Identities = 70/187 (37%), Positives = 109/187 (57%), Gaps = 7/187 (3%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKID-SEFLKSI 309
KAN VADALSR+ + A + +L+ + V + + LG+ D + L I
Sbjct: 509 KANQVADALSRRRSEVEAER-SQVDLVNMMGTLH-VNALSKEVEPLGLGAADQANLLSRI 566
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+ AQ D + + ++TE ++ + G + GR+C+P+N +K+ IL E+H+S
Sbjct: 567 RLAQERDEEIKGWAL-NNKTE---YQTSNNGTIVVNGRVCVPNNRALKEEILREAHQSKF 622
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPG+ K+Y DLK+ + G+K+DVA++V C CQ K EHQ P+G++ L + EWKW
Sbjct: 623 SIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKW 682
Query: 430 DSISMDF 436
D I+MDF
Sbjct: 683 DHITMDF 689
>At1g35370 hypothetical protein
Length = 1447
Score = 251 bits (642), Expect = 8e-67
Identities = 161/521 (30%), Positives = 256/521 (48%), Gaps = 64/521 (12%)
Query: 251 KANVVADALSR----KTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFL 306
K N+VADALSR + LHM+ +V + +FL
Sbjct: 971 KENLVADALSRVEGSEVLHMALSIV------------------------------ECDFL 1000
Query: 307 KSIKEAQRDDVKFVDLLVARDQTEDIDFKID-DQGVLRFRGRICIPDNEEIKKMILEESH 365
K I+ A D D++ A Q D Q +LR + +I +P++ EI +L+ H
Sbjct: 1001 KEIQVAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLH 1060
Query: 366 RSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVL 425
S + G + +K +F+ G+ +D+ F+ SC CQ+ K ++ G++ PL +
Sbjct: 1061 CSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIP 1120
Query: 426 EWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVK 485
+ W +SMDF+ LPN+ G I V+VDRL+K+AHF+ + + +A+ ++ + K
Sbjct: 1121 DKIWCDVSMDFIEGLPNSG-GKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYK 1179
Query: 486 LHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRIC 545
HG P+SIVSDRD FTS FWK + G +LR+SSAYHPQ+DGQ+E + LE+ LR
Sbjct: 1180 HHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCM 1239
Query: 546 VLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIV 605
+ W+ LPL E+ YN +YHSS M FE +YG+ L + +V + +
Sbjct: 1240 CHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSL 1299
Query: 606 QQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALK-SKKL 664
Q+ + ++ + +Q R K + D+ R + F GD +++++ P L+ ++KL
Sbjct: 1300 QERENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKL 1359
Query: 665 TPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDN 724
+PK+ GPY I+E+ G V + NV +QL +PD
Sbjct: 1360 SPKYFGPYKIIEKCGEVM-----------VGNVTTSTQLPSVLPD--------------- 1393
Query: 725 LTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWE 765
E P I +RK+ +G+ +V V W G E TW+
Sbjct: 1394 -IFEKAPEYILERKLVKRQGRAATMVLVKWIGEPVEEATWK 1433
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 233 bits (595), Expect = 2e-61
Identities = 113/229 (49%), Positives = 156/229 (67%), Gaps = 19/229 (8%)
Query: 508 SLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNS 567
+ Q+ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+ GG W+ +L L
Sbjct: 690 AFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLTL-------- 741
Query: 568 YHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQSRQK 627
ALYGR CRTPLCW ER + GP IV +TTE+++ ++ K+K + RQK
Sbjct: 742 -----------ALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAHDRQK 790
Query: 628 SYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGL 687
SY +KRRK+LEF+ GD ++L+ G GR KKL+P+++GPY ++ERVG VAY++ L
Sbjct: 791 SYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDL 850
Query: 688 PPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETLPLRIDD 736
PP L+ HNVFHVSQLRK + D ++ +++N+TVE P+RI D
Sbjct: 851 PPKLNAFHNVFHVSQLRKCLSDQEESVEDVPPGLKENMTVEAWPVRIMD 899
Score = 121 bits (304), Expect = 1e-27
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 7/187 (3%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKID-SEFLKSI 309
KAN VADALSR+ + A + +L+ + V + + LG+ D ++ L I
Sbjct: 509 KANQVADALSRRRSEVEAER-SQVDLVNMMGTLH-VNALSKEVESLGLGAADQADLLSRI 566
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+ AQ D + + ++TE ++ + G + GR+C+P++ +K+ IL E+H+S
Sbjct: 567 RLAQERDEEIKGWAL-NNKTE---YQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKF 622
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPG+ KMY DLK+ + G+K+DVA++V C CQ K EHQ P+G++ L + EWKW
Sbjct: 623 SIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKW 682
Query: 430 DSISMDF 436
D I+MDF
Sbjct: 683 DHITMDF 689
>At3g31480 hypothetical protein
Length = 338
Score = 202 bits (513), Expect = 8e-52
Identities = 109/251 (43%), Positives = 152/251 (60%), Gaps = 43/251 (17%)
Query: 434 MDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSI 493
MDFV LP + R DAIWVI DRLT SA FL I + VA LA Y+ EIVKLHGV SI
Sbjct: 1 MDFVVGLPMS-RTKDAIWVIGDRLTNSADFLAIRKTDGVAVLANKYVSEIVKLHGVHVSI 59
Query: 494 VSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTW 553
VSD+D +FTS FW + Q +G+K+++S+AYHP+TDG+ E+TIQ+LED+LR+
Sbjct: 60 VSDKDSKFTSAFWIAFQAEMGTKVQISTAYHPKTDGKFEKTIQTLEDMLRM--------- 110
Query: 554 DSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQ 613
TPLCW + ER + G V +TTE++Q
Sbjct: 111 ---------------------------------TPLCWTQVGERSIYGANYVHETTERIQ 137
Query: 614 MIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYH 673
+++ MK + RQ+SY D RR+++EF+ GD ++L++ + R + KL+PK++GP+
Sbjct: 138 VLKLNMKEAHDRQRSYADMRRREVEFEVGDRVYLKMDMLQSPKRFILETKLSPKYMGPFR 197
Query: 674 ILERVGTVAYR 684
I+ERVG VAYR
Sbjct: 198 IVERVGPVAYR 208
>At4g07850 putative polyprotein
Length = 1138
Score = 201 bits (512), Expect = 1e-51
Identities = 101/251 (40%), Positives = 153/251 (60%), Gaps = 2/251 (0%)
Query: 339 QGVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQF 398
+G L + R+CIP N ++++ + E+H L H G +K ++ F +KRDV +
Sbjct: 742 EGFLFYDNRLCIP-NSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFHWPHMKRDVERM 800
Query: 399 VYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLT 458
C C+++K + Q P G+ PL + W+ ISMDFV LP T G D+I+V+VDR +
Sbjct: 801 CERCTTCKQAKAKSQ-PHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFS 859
Query: 459 KSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLR 518
K AHF+P + + +A ++ +E+V+LHG+P +IVSDRD +F S FWK+L LG+KL
Sbjct: 860 KMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLL 919
Query: 519 LSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFE 578
S+ HPQTDGQ+E ++L LLR + + TW+ LP +EF YN+S HS+ + F+
Sbjct: 920 FSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQ 979
Query: 579 ALYGRRCRTPL 589
+YG TPL
Sbjct: 980 IVYGFNPITPL 990
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 165 bits (417), Expect = 1e-40
Identities = 105/306 (34%), Positives = 166/306 (53%), Gaps = 11/306 (3%)
Query: 475 LAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERT 534
+A ++ +VKLHG+P SIVSD DP F S FW+ + +KL +S+AYHPQTDGQ+E
Sbjct: 634 VAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTDGQTEVV 693
Query: 535 IQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFES 594
+ +E LR V W S +P E+ YN ++H+S GM F+ALYGR +P+ +E
Sbjct: 694 NRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRP-PSPIPAYEL 752
Query: 595 DERVVLGP--EIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTP- 651
VV G E + E + +++ + + + K D R +D+ F+ GD + LR+ P
Sbjct: 753 GS-VVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLRIQPY 811
Query: 652 --MTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPD 709
T R+ S+KL+ +F GP+ + + G VAYR+ LP + +H VFHVS L+ +V D
Sbjct: 812 RQKTLFRRS--SQKLSHRFYGPFQVASKHGEVAYRLTLPEG-TRIHPVFHVSLLKPWVGD 868
Query: 710 PSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESK 769
+R+N ++ P + + + ++ K + + V W G E TWE +
Sbjct: 869 -GEPDMGQLPPLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQ 927
Query: 770 MLESYP 775
+ S+P
Sbjct: 928 LAASFP 933
>At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein
Length = 280
Score = 159 bits (401), Expect = 7e-39
Identities = 95/276 (34%), Positives = 145/276 (52%), Gaps = 20/276 (7%)
Query: 434 MDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSI 493
MDFV LP T RG D+++V+VDR +K HF+ + + +A+++ KE+V+LHGVP SI
Sbjct: 1 MDFVLGLPRTQRGVDSVFVVVDRFSKMTHFIACKKTADASNIAKLFFKEVVRLHGVPKSI 60
Query: 494 VSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTW 553
SDRD +F S FW +L G+ L SS H Q DGQ+E T ++L +++R + W
Sbjct: 61 TSDRDTKFLSHFWSTLWRMFGTALNRSSTPHTQIDGQTEVTNRTLGNMVRSICGDNPKQW 120
Query: 554 DSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQ 613
D LP IEF YN+ H + + G T E +++ E+V
Sbjct: 121 DLALPQIEFAYNSVVH-VVDLVKLPKALGASAET------MAEEILVVKEVV-------- 165
Query: 614 MIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYH 673
+ K++A+ + K DKRR+ FKEGD + V G K+ P+ GP+
Sbjct: 166 --KAKLEATGKKNKVAADKRRRFKVFKEGDDVM--VLLRKGRFAVGTYNKVKPRKYGPFK 221
Query: 674 ILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPD 709
+L ++ AY V LP + N+ N F+V+ + +Y D
Sbjct: 222 VLRKINDNAYVVALPKSM-NISNTFNVADIHEYHAD 256
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 137 bits (346), Expect = 2e-32
Identities = 71/180 (39%), Positives = 114/180 (62%), Gaps = 5/180 (2%)
Query: 593 ESDERVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPM 652
++D VL + V + K+ + MK +Q RQ+SY DKRR++LEF+ GD ++L++ +
Sbjct: 1050 KTDGAAVLAKKFVSEIV-KLHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAML 1108
Query: 653 TGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSH 712
G R++ KL+P+++GP+ I+ERV VAYR+ LP + H VFHVS LRK +
Sbjct: 1109 RGPNRSISETKLSPRYMGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDE 1168
Query: 713 VIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVW--SGATGESLTWELESKM 770
+ ++ N+T+E P+R+ +R++K LR K+IPL++V+W G T E TWE E++M
Sbjct: 1169 ALAKIPEDLQPNMTLEARPVRVLERRIKELRQKKIPLIKVLWDCDGVTEE--TWEPEARM 1226
Score = 129 bits (325), Expect = 5e-30
Identities = 72/150 (48%), Positives = 92/150 (61%), Gaps = 3/150 (2%)
Query: 375 ATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISM 434
ATKMY DLK+ + G+K DVA +V C VCQ K EHQ GM+ L + EWKWD I+M
Sbjct: 958 ATKMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITM 1017
Query: 435 DFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSI- 493
D V L R DAIWVIVDRLTKSAHFL I + A LA+ ++ EIVKLHGVP ++
Sbjct: 1018 DLVVGL-RVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMK 1076
Query: 494 -VSDRDPRFTSRFWKSLQEALGSKLRLSSA 522
DR + + + L+ +G ++ L A
Sbjct: 1077 EAQDRQRSYADKRRRELEFEVGDRVYLKMA 1106
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 119 bits (298), Expect = 6e-27
Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 36/249 (14%)
Query: 251 KANVVADALSR----KTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKI-DSEF 305
K N+VADALSR + LHM A+ V E +LL++ ++ G + D +
Sbjct: 391 KENLVADALSRVEGSEVLHM-ALSVVECDLLKE--------------IQAGYVTDGDIQG 435
Query: 306 LKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESH 365
+ +I + Q D K QGVLR + +I +P+N IK IL H
Sbjct: 436 IITILQQQADSKKHYTW---------------SQGVLRRKNKIVVPNNSGIKDTILRWLH 480
Query: 366 RSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVL 425
S + H G + +K +F+ + +D+ F+ SC CQ+ K ++ G++ PL +
Sbjct: 481 CSGMGGHSGKEVTHQRVKGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIP 540
Query: 426 EWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVK 485
+ W +SMDF+ LP G I V+VDRL+K+AHF+ + + +A+ Y+ + K
Sbjct: 541 DRIWSDVSMDFIDGLP-LSNGKTVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFK 599
Query: 486 LHGVPSSIV 494
LHG PSSIV
Sbjct: 600 LHGCPSSIV 608
Score = 85.5 bits (210), Expect = 1e-16
Identities = 48/156 (30%), Positives = 89/156 (56%), Gaps = 5/156 (3%)
Query: 574 MASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKR 633
M +EA+YG+ L + + +V + +Q+ + ++ + +Q R K D+
Sbjct: 625 MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684
Query: 634 RKDLEFKEGDHMFLRVTPMTGVGRALKS-KKLTPKFIGPYHILERVGTVAYRVGLPPHLS 692
+ EF+ GD++F+++ P ++S +KL+PK+ GPY +++R G VAY++ LP + S
Sbjct: 685 ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPAN-S 743
Query: 693 NLHNVFHVSQLRKY---VPDPSHVIQSDDVQVRDNL 725
+H VFHVSQLR V +H+++ + +R+NL
Sbjct: 744 QVHPVFHVSQLRVLVGTVTTSTHLLRCYLMSLRENL 779
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.336 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,382,475
Number of Sequences: 26719
Number of extensions: 668504
Number of successful extensions: 2608
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2480
Number of HSP's gapped (non-prelim): 82
length of query: 779
length of database: 11,318,596
effective HSP length: 107
effective length of query: 672
effective length of database: 8,459,663
effective search space: 5684893536
effective search space used: 5684893536
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC141111.8