BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141111.6 - phase: 0 /pseudo
         (379 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g13360 alanine-glyoxylate aminotransferase                         638  0.0
At1g03190 putative DNA repair protein                                  31  0.98
At4g26000 nucleic acid binding protein like                            29  3.7
At3g30750 hypothetical protein                                         29  4.9
At1g08620 hypothetical protein                                         29  4.9
At5g15570 putative protein                                             28  8.3
At4g07320                                                              28  8.3
At3g08500 putative protein                                             28  8.3

>At2g13360 alanine-glyoxylate aminotransferase
          Length = 401

 Score =  638 bits (1646), Expect = 0.0
 Identities = 306/356 (85%), Positives = 339/356 (94%)

Query: 1   MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTG 60
           MDY+ GPGR+HLFVPGPVNIP+ VIRAM+RNNEDYRSPAIPALTKTLLEDVKKIFKTT+G
Sbjct: 1   MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRG 120
           TPFL PTTGTGAWESALTNTLSPGDRIVSF+IGQFSLLW+DQQ+RL FNVDVVES+WG+G
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120

Query: 121 ADLDILESKLASDSAHTIKAICIVHNETATGVTNNLAKVRQLLDAYQHPALLLVDGVSSI 180
           A+L +L SKL+ D  HTIKAICIVHNETATGVTN+++ VR LLD Y+HPALLLVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180

Query: 181 CALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKF 240
           CALDFRMDEWGVDVA+TGSQKALSLPTG+G V ASPKA+EA+K++KSL+VFFDW+DYLKF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240

Query: 241 YKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQE 300
           YK+GTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARH RLG ATRLAVEAWGLKNCTQ+
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNE 356
           EEW S+TVTAV+VPP+IDG+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGN+NE
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNE 356


>At1g03190 putative DNA repair protein
          Length = 758

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 127 ESKLASDSAHTIKAICI------VHNETATGVTNNLAKVRQLLDAYQ 167
           ES +  D AH I  +CI      V   T  G   NL K+RQ +D ++
Sbjct: 228 ESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFK 274


>At4g26000 nucleic acid binding protein like
          Length = 495

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 9/48 (18%)

Query: 16  GPVNIPDQVIRAMSRNN-EDYRSPAIPALTKTLLEDVKKIFKTTTGTP 62
           GPVN PD+++    +   E Y SPA+ A        V ++F+  +G P
Sbjct: 112 GPVNTPDRIVLISGKEEPEAYMSPAMDA--------VLRVFRRVSGLP 151


>At3g30750 hypothetical protein
          Length = 111

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 11/41 (26%), Positives = 19/41 (45%)

Query: 40 IPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNT 80
          +P + +  L+DV+ +F         +P  G G W    T+T
Sbjct: 4  VPHIDRQFLKDVEAVFTARARVNLPVPNPGLGTWVDRTTDT 44


>At1g08620 hypothetical protein
          Length = 1183

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 244 GTYWPY----TPSIQLLYGLRAALDL-IFEEGLENIIARHNRLGTATRLAVEAWGLKN 296
           G YW      T  I++LYG  A L+  +F  G   I + HN   +  + A   W L N
Sbjct: 290 GEYWRIVDKATEEIEVLYG--ADLETGVFGSGFPKISSSHNASSSEDKYAKSGWNLNN 345


>At5g15570 putative protein
          Length = 381

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 280 RLGTATRLAVEAWGLKNCTQEEEWFSD 306
           R    TR A E W +  C +E+ WF +
Sbjct: 332 RFKIGTRKASECWKINQCLEEKGWFKE 358


>At4g07320
          Length = 437

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 14  VPGPVNIPDQVIRAMSRNNEDYRSPAIP 41
           VPGPVN P QVI + S + +D    + P
Sbjct: 376 VPGPVNAPVQVILSDSEDGDDEEDDSNP 403


>At3g08500 putative protein
          Length = 343

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/79 (21%), Positives = 31/79 (38%)

Query: 4   VNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPF 63
           VN  G N L+ P  +++PD     M      +    +     T+L+ + K         F
Sbjct: 203 VNSVGLNQLYDPLMISVPDNGYHQMGNTVNVFSVNGLGDYGNTILDPISKRVSVEGDDWF 262

Query: 64  LIPTTGTGAWESALTNTLS 82
           + P+  T     + +N L+
Sbjct: 263 IPPSENTNVIACSTSNNLN 281


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,305,031
Number of Sequences: 26719
Number of extensions: 336447
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 9
length of query: 379
length of database: 11,318,596
effective HSP length: 101
effective length of query: 278
effective length of database: 8,619,977
effective search space: 2396353606
effective search space used: 2396353606
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)