BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141111.5 - phase: 0 /pseudo
         (1478 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g10780 pseudogene                                                  355  8e-98
At4g10580 putative reverse-transcriptase -like protein                304  2e-82
At2g04670 putative retroelement pol polyprotein                       292  9e-79
At2g07660 putative retroelement pol polyprotein                       288  2e-77
At1g36120 putative reverse transcriptase gb|AAD22339.1                261  2e-69
At2g14650 putative retroelement pol polyprotein                       256  7e-68
At3g11970 hypothetical protein                                        235  2e-61
At1g36590 hypothetical protein                                        235  2e-61
At1g35370 hypothetical protein                                        224  3e-58
At2g05610 putative retroelement pol polyprotein                       205  1e-52
At2g06890 putative retroelement integrase                             198  2e-50
At4g04230 putative transposon protein                                 171  3e-42
At2g14640 putative retroelement pol polyprotein                       140  5e-33
At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein        135  2e-31
At4g08100 putative polyprotein                                        127  5e-29
At1g20390 hypothetical protein                                        113  7e-25
At2g14400 putative retroelement pol polyprotein                       112  1e-24
At2g15410 putative retroelement pol polyprotein                       110  6e-24
At2g14040 putative retroelement pol polyprotein                       105  1e-22
At1g37060 Athila retroelment ORF 1, putative                          104  3e-22

>At2g10780 pseudogene
          Length = 1611

 Score =  355 bits (912), Expect = 8e-98
 Identities = 254/718 (35%), Positives = 362/718 (50%), Gaps = 96/718 (13%)

Query: 3   AQAVGQQPAAGNGEVR-----MLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCS 57
           ++ V   P   +G  R     +LE   R     F G  DP  A  W   ++R F+  +C 
Sbjct: 149 SEVVEVNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCP 208

Query: 58  EVQKVRFGTHQLAEEADDWWVSLLPNLDQDGVDV-TWAVF*REFMRRYFPEDVRRKKEIE 116
           E  +     H L  +A +WW+++     + G +V ++A F  EF ++YFP +   + E  
Sbjct: 209 EDYQRDIAVHFLEGDAHNWWLTVEK---RRGDEVRSFADFEDEFNKKYFPPEAWDRLECA 265

Query: 117 FLELKQGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRV 176
           +L+L QGN  V EY  +F  L  +      E  E ++  +F  GLR +I+     +    
Sbjct: 266 YLDLVQGNRTVREYDEEFNRLRRYVGRELEE--EQAQLRRFIRGLRIEIRNHCLVRTFNS 323

Query: 177 FPDLVNSCRIYEEDTKAHYKVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAP 236
             +LV    + EE  +   + +N  K   + ++    + PADK  +R  D     K DA 
Sbjct: 324 VSELVERAAMIEEGIEEE-RYLNREKAPIRNNQS---TKPADK--KRKFDKVDNTKSDAK 377

Query: 237 AEITCFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVADCKRNDI-----------VCFNFN 285
               C  CG K H S  C + I  C RCG K H +  C + +             CF   
Sbjct: 378 TG-ECVTCG-KNH-SGTCWKAIGACGRCGSKDHAIQSCPKMEPGQSKVLGEETRTCFYCG 434

Query: 286 EEGHIGSQCKQ---------------------PKKSPTTGRVFALDGTQTENEDRLIRCT 324
           + GH+  +C +                     PK+     RV+ L  ++  N+    R  
Sbjct: 435 KTGHLKRECPKLTAEKQAGQRDNRGGNGLPPPPKRQAVASRVYEL--SEEANDAGNFR-- 490

Query: 325 CYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCL 384
                    AI           +  V A G       G+ +  T   GLV    V +   
Sbjct: 491 ---------AITGGFRKEPNTDYGMVRAAG-------GQAMYPT---GLVRGISVVVN-- 529

Query: 385 LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFS---------SVEEE 435
               G +   DL+ +PL   DVILGM+WL     HI+     + F           +   
Sbjct: 530 ----GVNMPADLIIVPLKKHDVILGMDWLGKYKAHIDCHRGRIQFERDEGMLKFQGIRTT 585

Query: 436 SGAEFLSTKQLKQMERDGILMYPLMASLSFEN---QAVIDKLQVVCDFPEVFPDEIPDVP 492
           SG+  +S  Q ++M   G   Y  +A+++ +     A +  + +V +F +VF   +  VP
Sbjct: 586 SGSLVISAIQAERMLGKGCEAY--LATITTKEVGASAELKDIPIVNEFSDVFA-AVSGVP 642

Query: 493 LEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLV 552
            +R   F+I+L  GT P+S APYRM+ +E+AKLKKQLE+LL+K F+RPS SPWGAPVL V
Sbjct: 643 PDRSDPFTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFV 702

Query: 553 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDE 612
           KKKDGS RLCIDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL SGYHQI ++  
Sbjct: 703 KKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPT 762

Query: 613 DMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
           D++KTAF TRY H+E+ VMPFG+TNAP  FM+ MN +F  FLD FV++FI+DIL+YSK
Sbjct: 763 DVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSK 820


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  304 bits (779), Expect = 2e-82
 Identities = 164/333 (49%), Positives = 216/333 (64%), Gaps = 22/333 (6%)

Query: 349 CVSALGLDLFDMNGE-MVVETPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVI 407
           C S   LD  D  G+ + V   AKG+           + + G     DL+  P+   DVI
Sbjct: 331 CFSCGSLDHKDAGGQFLAVLGRAKGVD----------IQIAGESMPADLIISPVELYDVI 380

Query: 408 LGMNWLEYNHVHINYFTKSVYFSSVEEE---------SGAEFLSTKQLKQMERDGILMYP 458
           LGM+WL+Y  VH+++    V+F   E           SG+  +S  Q ++M   G   Y 
Sbjct: 381 LGMDWLDYYRVHLDWHRGRVFFERPEGRLVYQGVRPISGSLVISAVQAEKMIEKGCEAYL 440

Query: 459 LMASLSFE-NQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRM 517
           +  S+     Q  +  ++VV +F +VF   +  +P  +   F+I+L  GT P+S APYRM
Sbjct: 441 VTISMPESVGQVAVSDIRVVQEFQDVF-QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRM 499

Query: 518 SASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRY 577
           + +E+A+LKKQL+DLL K F+RPS SPWGAPVL VKKKDGS RLCIDYR+LN+VT+KNRY
Sbjct: 500 APAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRY 559

Query: 578 PLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTN 637
           PLPRID+L+DQL GA  FSKIDL SGYHQI + + D++KTAF TRYGH+E+ VMPFG+TN
Sbjct: 560 PLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTN 619

Query: 638 APGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
           AP VFM  MN +F  FLD FV++FIDDIL+YSK
Sbjct: 620 APAVFMRLMNSVFQEFLDEFVIIFIDDILVYSK 652



 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 70/251 (27%), Positives = 100/251 (38%), Gaps = 43/251 (17%)

Query: 8   QQPAAGNGEV----RMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVR 63
           QQ AA   EV    RM+E   R     F G   P+ A +W   V R F   +C    +V 
Sbjct: 125 QQRAAVAEEVLSYLRMMEQLQRIDTGYFSGGTSPEEADSWRSRVGRNFGSSRCPAEYRVD 184

Query: 64  FGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQG 123
              H L  +A  WW S+     Q   D++WA F  EF  +YFP++               
Sbjct: 185 LAVHFLEGDAHLWWRSVTARRRQ--TDMSWADFVAEFKAKYFPQEA-------------- 228

Query: 124 NMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNS 183
              +  YA + +E             + ++  +F  GLRPD++      Q      LV +
Sbjct: 229 ---LDPYAGQGME------------DDQAQMRRFLRGLRPDLRVRCRVSQYATKAALVET 273

Query: 184 CRIYEEDTKAHY----KVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEI 239
               EED +        VV  +KT+ QQ  P     PA +G++R  D   P +       
Sbjct: 274 AAEVEEDFQRQVVGVSPVVQPKKTQ-QQVTPSKGGKPA-QGQKRKWD--HPSRAGQGGRA 329

Query: 240 TCFNCGEKGHK 250
            CF+CG   HK
Sbjct: 330 RCFSCGSLDHK 340


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  292 bits (748), Expect = 9e-79
 Identities = 151/296 (51%), Positives = 196/296 (66%), Gaps = 11/296 (3%)

Query: 385 LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFS---------SVEEE 435
           + + G     DL+  P+   DVILGM+WL++  VH++     V F           V   
Sbjct: 384 IQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGRLVYQGVRPT 443

Query: 436 SGAEFLSTKQLKQMERDGILMYPLMASLSFE-NQAVIDKLQVVCDFPEVFPDEIPDVPLE 494
           SG+  +S  Q K+M   G   Y +  S+     Q  +  ++V+ +F +VF   +  +P  
Sbjct: 444 SGSLVISAVQAKKMIEKGCEAYLVTISMPESLGQVAVSDIRVIQEFEDVF-QSLQGLPPS 502

Query: 495 REVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKK 554
           R   F+I+L  GT P+S APYRM+ +E+ +LKKQLEDLL K F+RPS SPWGAPVL VKK
Sbjct: 503 RSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKK 562

Query: 555 KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDM 614
           KDGS RLCIDYR LN VT+KN+YPLPRID+L+DQL GA  FSKIDL SGYHQI + + D+
Sbjct: 563 KDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADV 622

Query: 615 QKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
           +KTAF TRYGH+E+ VMPF +TNAP  FM  MN +F  FLD FV++FIDDIL+YSK
Sbjct: 623 RKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSK 678



 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 79/258 (30%), Positives = 109/258 (41%), Gaps = 18/258 (6%)

Query: 8   QQPAAGNGEV----RMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVR 63
           QQ AA   EV    RM+E   R     F     P+ A +W   V+R F   +C    +V 
Sbjct: 111 QQRAAVAEEVPSYLRMMEQLQRIGTWYFSSGTSPEEADSWRSRVQRNFGSSRCPAEYRVD 170

Query: 64  FGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQG 123
              H L  +A  WW S+     Q   D++WA F  EF  +YFP++   + E  FLEL QG
Sbjct: 171 LAVHFLEGDAHLWWRSVTARRRQ--ADMSWADFVAEFNAKYFPQEALDRMEARFLELTQG 228

Query: 124 NMYVTEYAAKFVELAEFYPHYAAETVE--FSKCIKFENGLRPDIKRAIEYQQIRVFPDLV 181
              V EY  +F  L      YA   +E   ++  +F  GLRPD++      Q      LV
Sbjct: 229 EWSVREYDREFNRLLA----YAGRGMEDDQAQMRRFLRGLRPDLRVQCRVSQYATKAALV 284

Query: 182 NSCRIYEEDTKAHYKVVN---ERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAE 238
            +    EED +     V+   + K   QQ  P     PA +G++R  D   P +      
Sbjct: 285 ETAAEVEEDLQRQVVGVSPAVQTKNTQQQVTPSKGGKPA-QGQKRKWD--HPSRAGQGGR 341

Query: 239 ITCFNCGEKGHKSNVCPE 256
              F+CG   H    C E
Sbjct: 342 AGYFSCGSLDHTVADCTE 359


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  288 bits (736), Expect = 2e-77
 Identities = 152/294 (51%), Positives = 202/294 (68%), Gaps = 15/294 (5%)

Query: 389 GRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFS---------SVEEESGAE 439
           G +   DL+ +PL   DVILGM+WL     HI+   + + F           +   SG+ 
Sbjct: 25  GVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHRERIQFERDEGMLKFQGIRTTSGSL 84

Query: 440 FLSTKQLKQMERDGILMYPLMASLSFEN---QAVIDKLQVVCDFPEVFPDEIPDVPLERE 496
            +S  Q ++M   G   Y  +A+++ +     A +  + +V +F +VF   +  VP +R 
Sbjct: 85  VISAIQAERMLGKGCEAY--LATITTKEVGASAELKDILIVNEFSDVFA-AVSGVPPDRS 141

Query: 497 VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKD 556
             F+I+L  GT P+S APYRM+ +E+A+LKKQLE+LL K F+RPS SPWGAPVL VKKKD
Sbjct: 142 DPFTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKD 201

Query: 557 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 616
           GS RLCIDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL SGYHQI ++  D++K
Sbjct: 202 GSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRK 261

Query: 617 TAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
           TAF TRYGH+E+ VMPFG+TNAP  FM+ MN +F  FLD FV++FIDDIL++SK
Sbjct: 262 TAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSK 315


>At1g36120 putative reverse transcriptase gb|AAD22339.1
          Length = 1235

 Score =  261 bits (667), Expect = 2e-69
 Identities = 200/619 (32%), Positives = 290/619 (46%), Gaps = 108/619 (17%)

Query: 77  WVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVE 136
           ++ ++  L + G D     F  EF  +YFP++   + E  FLEL +G + V EY  +F  
Sbjct: 143 YLRMMEQLQRIGTD-----FVAEFNAKYFPQEALDRMEARFLELTKGELSVREYGREFKR 197

Query: 137 LAEFYPHYAAETVEFSKCI--KFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAH 194
           L      YA   +E  +    +F  GLRPD++       +R        CR+ +  TKA 
Sbjct: 198 LLV----YAGRGMEDDQAQMRRFLRGLRPDLR-------VR--------CRVSQYATKAA 238

Query: 195 YKVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSNVC 254
                              +A  ++  QR V    P                     +V 
Sbjct: 239 LT-----------------AAEVEEDLQRQVVAVSP---------------------SVQ 260

Query: 255 PEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQT 314
           P++I++ V   K G      KR     F   + G  GS       S   G   +    ++
Sbjct: 261 PKKIQQQVAPSKGGKPAQVQKRKWDHPFRAGQGGRAGSAADDSSTSTAGGAAQSAGAARS 320

Query: 315 ENEDRLIRCTC----YINNTPLVA-------IIDTGATHCFIAFDCVSALGLDLFDMNGE 363
             E   +   C    ++    L++       + D+GA+HCFI  +  SA   ++    GE
Sbjct: 321 AAECAAVSTYCSGTTWLYYADLISGRCRGHVLFDSGASHCFITPE--SASRDNIRGEPGE 378

Query: 364 M--VVETPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHIN 421
               V+      +T         + +       DL+  P+   D ILGM+WL++  VH++
Sbjct: 379 QFGAVKIAGGQFLTVLGRAKGVNIQIEEESMPADLIINPVVLYDAILGMDWLDHYRVHLD 438

Query: 422 YFTKSVYFS---------SVEEESGAEFLSTKQLKQMERDGILMYPLMASLSFE-NQAVI 471
                V F           V   S +  +S  Q+++M   G   Y +  S+S    Q  +
Sbjct: 439 CHRGRVSFERPEGRLVYQGVRPTSRSLVISEVQVEKMIEKGCEAYLVTISMSESVGQVAV 498

Query: 472 DKLQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLED 531
             + VV +F +VF   +  +P  R   F+I+L LGT P+S  PYRM  +E+A+LKKQLED
Sbjct: 499 SDIWVVQEFEDVF-QSLQGLPPSRSDPFTIELELGTAPLSKTPYRMVPAEIAELKKQLED 557

Query: 532 LLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVG 591
           LL K F+RPS S WGAP                   LN+VT+KN+YPLPRID+L+DQL G
Sbjct: 558 LLGKGFIRPSTSRWGAP------------------GLNRVTLKNKYPLPRIDELLDQLRG 599

Query: 592 AKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFH 651
           A  FSKIDL  GYHQ  + + D++KTAF TRYGH+E+ VMPFG+TNAP   M  MN +F 
Sbjct: 600 ATCFSKIDLTPGYHQFPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPTALMRLMNSVFQ 659

Query: 652 AFLDRFVVVFIDDILIYSK 670
            FLD FV++FIDDIL+Y K
Sbjct: 660 EFLDEFVIIFIDDILVYFK 678


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  256 bits (654), Expect = 7e-68
 Identities = 153/357 (42%), Positives = 201/357 (55%), Gaps = 44/357 (12%)

Query: 324 TCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRC 383
           T  +       + D+GA+HCFI  +  S  G    D   ++     A G     L   + 
Sbjct: 305 TLLVGGVEAHVLFDSGASHCFITPESASR-GNIRGDPGEQLGAVKVAGGQFVAVLGRTKG 363

Query: 384 L-LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFS---------SVE 433
           + + + G     DL+  P+   DVILGM+WL++  VH++     V F           V 
Sbjct: 364 VDIQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGSLVYQGVR 423

Query: 434 EESGAEFLSTKQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPL 493
             SG+  +S  Q ++M   G   Y                     +F +VF   +  +P 
Sbjct: 424 PTSGSLVISAVQAEKMIEKGCEAY--------------------LEFEDVF-QSLQGLPP 462

Query: 494 EREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVK 553
            R   F+I+L  GT P+S APYRM+ +E+A+LKKQLEDLL            GAPVL VK
Sbjct: 463 SRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLL------------GAPVLFVK 510

Query: 554 KKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDED 613
           KKDGS RLCIDYR LN VT+KN+YPLPRID+L+DQL GA  FSKIDL SGYH I + + D
Sbjct: 511 KKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEAD 570

Query: 614 MQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
           ++KTAF TRYGH+E+ VMPFG+TNAP  FM  MN +F   LD FV++FIDDIL+YSK
Sbjct: 571 VRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSK 627



 Score = 67.8 bits (164), Expect = 4e-11
 Identities = 43/120 (35%), Positives = 57/120 (46%), Gaps = 6/120 (5%)

Query: 8   QQPAAGNGEV----RMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVR 63
           QQ AA   EV    RM+E   R     F G   P+ A +W   VER F   +C    ++ 
Sbjct: 129 QQRAAVAEEVPSYLRMMEQLQRIGTGYFSGGTSPEVADSWRSRVERNFGSSRCPAEYRID 188

Query: 64  FGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQG 123
              H L  +A  WW S+     Q   D++WA F  EF  +YFP++   + E  FLEL QG
Sbjct: 189 LAVHFLEGDAHLWWRSVTARRRQ--ADISWADFVAEFNAKYFPQEALDRMEAHFLELTQG 246


>At3g11970 hypothetical protein
          Length = 1499

 Score =  235 bits (599), Expect = 2e-61
 Identities = 204/700 (29%), Positives = 321/700 (45%), Gaps = 118/700 (16%)

Query: 34  RYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVSLLPNLDQDGVDVT- 92
           R+D    + WL +VE  F V    E  KV+         A  W  S +    Q GV +  
Sbjct: 116 RFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFI----QSGVGLEV 171

Query: 93  ---WAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAEFYPHYAAETV 149
              W  + +    R+  +      E++ L+   G   + +Y  KF EL +   + + E +
Sbjct: 172 LYDWKGYVKLLKERFEDDCDDPMAELKHLQETDG---IIDYHQKF-ELIKTRVNLSEEYL 227

Query: 150 EFSKCIKFENGLRPDIKRAIEYQQIRVF-PDLVNSC----RIYEEDTKAH---------- 194
                  +  GLR D +       +R+F P  V  C    + YE   KAH          
Sbjct: 228 ----VSVYLAGLRTDTQ-----MHVRMFQPQTVRHCLFLGKTYE---KAHPKKPANTTWS 275

Query: 195 ------------YKVVNERKTK--GQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEIT 240
                       Y+   E KT   G +   KP S    K  Q+ + DRR K         
Sbjct: 276 TNRSAPTGGYNKYQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEMSDRRSKG-------L 328

Query: 241 CFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKS 300
           C+ C EK    +    +  +  R         +  R ++V    N++     Q      S
Sbjct: 329 CYFCDEKYTPEHYLVHKKTQLFRMDVDEEF--EDAREELV----NDDDEHMPQISVNAVS 382

Query: 301 PTTG-RVFALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALG--LDL 357
              G +   + GT     D+ I          +  +ID+G+TH F+  +  + LG  +D 
Sbjct: 383 GIAGYKTMRVKGTY----DKKI----------IFILIDSGSTHNFLDPNTAAKLGCKVDT 428

Query: 358 FDMNGEMVVE---TPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLE 414
             +    V +      +G VT     L+         F+ D++ +PL G+D++LG+ WLE
Sbjct: 429 AGLTRVSVADGRKLRVEGKVTDFSWKLQTTT------FQSDILLIPLQGIDMVLGVQWLE 482

Query: 415 YN----------HVHINYFTKSVYFSSVEEESGAEFLSTKQLKQMERDGILMYPLMASLS 464
                        +   +  + V    +   S  E +  ++L++++ D + +  L     
Sbjct: 483 TLGRISWEFKKLEMRFKFNNQKVLLHGLTSGSVRE-VKAQKLQKLQEDQVQLAMLCVQEV 541

Query: 465 FEN--------QAVIDKL-------QVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKP 509
            E+         A+  +L       +V+ ++P++F +     P   +    I L+ G+ P
Sbjct: 542 SESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNP 601

Query: 510 VSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLN 569
           V+  PYR S  +  ++ K +EDLL    V+ S SP+ +PV+LVKKKDG+ RLC+DYR+LN
Sbjct: 602 VNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELN 661

Query: 570 KVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYK 629
            +T+K+ +P+P I+DLMD+L GA +FSKIDLR+GYHQ+++  +D+QKTAF T  GH+EY 
Sbjct: 662 GMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYL 721

Query: 630 VMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
           VMPFG+TNAP  F   MN IF  FL +FV+VF DDIL+YS
Sbjct: 722 VMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYS 761


>At1g36590 hypothetical protein
          Length = 1499

 Score =  235 bits (599), Expect = 2e-61
 Identities = 204/700 (29%), Positives = 321/700 (45%), Gaps = 118/700 (16%)

Query: 34  RYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVSLLPNLDQDGVDVT- 92
           R+D    + WL +VE  F V    E  KV+         A  W  S +    Q GV +  
Sbjct: 116 RFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFI----QSGVGLEV 171

Query: 93  ---WAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAEFYPHYAAETV 149
              W  + +    R+  +      E++ L+   G   + +Y  KF EL +   + + E +
Sbjct: 172 LYDWKGYVKLLKERFEDDCDDPMAELKHLQETDG---IIDYHQKF-ELIKTRVNLSEEYL 227

Query: 150 EFSKCIKFENGLRPDIKRAIEYQQIRVF-PDLVNSC----RIYEEDTKAH---------- 194
                  +  GLR D +       +R+F P  V  C    + YE   KAH          
Sbjct: 228 ----VSVYLAGLRTDTQ-----MHVRMFQPQTVRHCLFLGKTYE---KAHLKKPANTTWS 275

Query: 195 ------------YKVVNERKTK--GQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEIT 240
                       Y+   E KT   G +   KP S    K  Q+ + DRR K         
Sbjct: 276 TNRSAPTGGYNKYQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEMSDRRSKG-------L 328

Query: 241 CFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKS 300
           C+ C EK    +    +  +  R         +  R ++V    N++     Q      S
Sbjct: 329 CYFCDEKYTPEHYLVHKKTQLFRMDVDEEF--EDAREELV----NDDDEHMPQISVNAVS 382

Query: 301 PTTG-RVFALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALG--LDL 357
              G +   + GT     D+ I          +  +ID+G+TH F+  +  + LG  +D 
Sbjct: 383 GIAGYKTMRVKGTY----DKKI----------IFILIDSGSTHNFLDPNTAAKLGCKVDT 428

Query: 358 FDMNGEMVVE---TPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLE 414
             +    V +      +G VT     L+         F+ D++ +PL G+D++LG+ WLE
Sbjct: 429 AGLTRVSVADGRKLRVEGKVTDFSWKLQTTT------FQSDILLIPLQGIDMVLGVQWLE 482

Query: 415 YN----------HVHINYFTKSVYFSSVEEESGAEFLSTKQLKQMERDGILMYPLMASLS 464
                        +   +  + V    +   S  E +  ++L++++ D + +  L     
Sbjct: 483 TLGRISWEFKKLEMRFKFNNQKVLLHGLTSGSVRE-VKAQKLQKLQEDQVQLAMLCVQEV 541

Query: 465 FEN--------QAVIDKL-------QVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKP 509
            E+         A+  +L       +V+ ++P++F +     P   +    I L+ G+ P
Sbjct: 542 SESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNP 601

Query: 510 VSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLN 569
           V+  PYR S  +  ++ K +EDLL    V+ S SP+ +PV+LVKKKDG+ RLC+DYR+LN
Sbjct: 602 VNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELN 661

Query: 570 KVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYK 629
            +T+K+ +P+P I+DLMD+L GA +FSKIDLR+GYHQ+++  +D+QKTAF T  GH+EY 
Sbjct: 662 GMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYL 721

Query: 630 VMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
           VMPFG+TNAP  F   MN IF  FL +FV+VF DDIL+YS
Sbjct: 722 VMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYS 761


>At1g35370 hypothetical protein
          Length = 1447

 Score =  224 bits (571), Expect = 3e-58
 Identities = 189/662 (28%), Positives = 308/662 (45%), Gaps = 68/662 (10%)

Query: 34  RYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVSLLPNLDQDGVDVTW 93
           R+D      WL +VE  F V    E  KV+         A  W  S + +     V   W
Sbjct: 121 RFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNW 180

Query: 94  AVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAEFYPHYAAETVEFSK 153
             + +    R+  ED       E  +L++ +  V EY  +F EL +   + + E +    
Sbjct: 181 PEYVKLLKDRF--EDACDDPMAELKKLQETDGIV-EYHQQF-ELIKVRLNLSEEYL---- 232

Query: 154 CIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYK--VVNERKTKGQQSRPK 211
              +  GLR D +  +   + +   D +   + YE   +AH K  V +    KG +S   
Sbjct: 233 VSVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYE---RAHPKKTVSSTWSQKGTRSG-- 287

Query: 212 PYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRCGKKGHIV 271
                   G  R V +   K         C+ C EK    +    +  +  R        
Sbjct: 288 --------GSYRPVKEVEQKSDHLGL---CYFCDEKFTPEHYLVHKKTQLFRMD------ 330

Query: 272 ADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTENEDRLIRCTCYINNTP 331
            D +  D V    +++       ++P    +   V  + G +T      ++ T  ++   
Sbjct: 331 VDEEFEDAVEVLSDDDHE-----QKPMPQISVNAVSGISGYKTMG----VKGT--VDKRD 379

Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMFGRD 391
           L  +ID+G+TH FI     + LG  +       V     + L     +       +    
Sbjct: 380 LFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQI-KGFTWKLQSTT 438

Query: 392 FEMDLVCLPLSGMDVILGMNWLE--------YNHVHINYFTKS--VYFSSVEEESGAEFL 441
           F+ D++ +PL G+D++LG+ WLE        +  + + +F K+  V+   +   S  +  
Sbjct: 439 FQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITGSVRDIK 498

Query: 442 STK-QLKQMERDGILMYPLMASLSFENQAV--IDKL-----------QVVCDFPEVFPDE 487
           + K Q  Q ++  + M  +   +S E Q +  I  L            +V +FP+VF + 
Sbjct: 499 AHKLQKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEP 558

Query: 488 IPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGA 547
               P   + +  I L+ G  PV+  PYR    +  ++ K ++D+++   ++ S SP+ +
Sbjct: 559 TDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFAS 618

Query: 548 PVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQI 607
           PV+LVKKKDG+ RLC+DY +LN +T+K+R+ +P I+DLMD+L G+ VFSKIDLR+GYHQ+
Sbjct: 619 PVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQV 678

Query: 608 KVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILI 667
           ++  +D+QKTAF T  GH+EY VM FG+TNAP  F   MN +F  FL +FV+VF DDILI
Sbjct: 679 RMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILI 738

Query: 668 YS 669
           YS
Sbjct: 739 YS 740


>At2g05610 putative retroelement pol polyprotein
          Length = 780

 Score =  205 bits (522), Expect = 1e-52
 Identities = 96/195 (49%), Positives = 137/195 (70%)

Query: 475 QVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLE 534
           +VV +FP++F +     P     +  I+L+  + PV+  PYR    +  ++ K ++D+L 
Sbjct: 9   KVVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDMLA 68

Query: 535 KKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKV 594
              ++ S SP+ +PV+LVKKKDG+ RLC+DYR+LN +T+K+R+P+P I+DLMD+L G+ V
Sbjct: 69  SGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNV 128

Query: 595 FSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFL 654
           +SKIDLR+GYHQ+++   D+ KTAF T  GHYEY VMPFG+TNAP  F   MN  F  FL
Sbjct: 129 YSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPFL 188

Query: 655 DRFVVVFIDDILIYS 669
            +FV+VF DDILIYS
Sbjct: 189 RKFVLVFFDDILIYS 203


>At2g06890 putative retroelement integrase
          Length = 1215

 Score =  198 bits (504), Expect = 2e-50
 Identities = 168/639 (26%), Positives = 273/639 (42%), Gaps = 129/639 (20%)

Query: 102 RRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGL 161
           +R+ P    R+  ++   L QGN  V EY   + E+              +   +F   L
Sbjct: 7   KRFVPSHYHRELHLKLRNLTQGNRSVEEY---YKEMETLMLRADISEDREATLSRFLGDL 63

Query: 162 RPDIKRAIEYQQIRVFPDLVNSCRIYEEDTK--------------AHYKVVNERKTKGQQ 207
             DI+  +E Q      ++++   ++E+  K              A      E +T    
Sbjct: 64  NRDIQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSYGSGTIAKPTYQREERTSSYH 123

Query: 208 SRP--------KPYSAPAD-KGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSNVCPEEI 258
           ++P        KPY+A  D KGK  +   R         ++ C+ C  KGH +N CP   
Sbjct: 124 NKPIVSPRAESKPYAAVQDHKGKAEISTSR-------VRDVRCYKCQGKGHYANECPN-- 174

Query: 259 KKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGT------ 312
           K+ +     G I  +            E     S  K+ ++ P  G +     T      
Sbjct: 175 KRVMILLDNGEIEPE-----------EEIPDSPSSLKENEELPAQGELLVARRTLSVQTK 223

Query: 313 --QTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPA 370
             + E    L    C+++      IID G+     +   V  LGL   + +G+M V    
Sbjct: 224 TDEQEQRKNLFHTRCHVHGKVCSLIIDGGSCTNVASETMVKKLGLKWLNDSGKMRV---- 279

Query: 371 KGLVTTSLVCLRCLLSMFGRDFEMDLVC--LPLSGMDVILGMNWLEYNHVHINYFT---- 424
           K  V   +V  +         +E +++C  LP+    ++LG  W     V  + FT    
Sbjct: 280 KNQVVVPIVIGK---------YEDEILCDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHS 330

Query: 425 ------KSVYFSSVEEESGAEFLSTKQLKQM-------------------ERDGILMYPL 459
                 K++  S    E   + +  KQ K+                     +  +L++  
Sbjct: 331 FEFKGGKTILVSMTPHEVYQDQIHLKQKKEQVVKQPNFFAKSGEVKSAYSSKQPMLLFVF 390

Query: 460 MASL-SFENQAVI---DKLQVVCDFPEVFPDEIPD-VPLEREVEFSIDLILGTKPVSMAP 514
             +L S  N A +   +   ++ D+ +VFP++ P  +P  R +E  ID + G    +   
Sbjct: 391 KEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPA 450

Query: 515 YRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIK 574
           YR +  E  +L++Q                          KDGS R+C D R +N VT+K
Sbjct: 451 YRTNPVETKELQRQ--------------------------KDGSWRMCFDCRAINNVTVK 484

Query: 575 NRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFG 634
             +P+PR+DD++D+L G+ +FSKIDL+SGYHQI++ + D  KTAF T++G YE+ VMPFG
Sbjct: 485 YCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFG 544

Query: 635 VTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD*R 673
           +T+AP  FM  MN +  AF+  FV+V+ DDIL+YS+  R
Sbjct: 545 LTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLR 583


>At4g04230 putative transposon protein
          Length = 315

 Score =  171 bits (433), Expect = 3e-42
 Identities = 76/138 (55%), Positives = 107/138 (77%)

Query: 533 LEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGA 592
           + K ++R S+SP   PVLLV KKDG+ R+C+D R +N +TIK R+P+PR+ D++D+L GA
Sbjct: 125 IHKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGA 184

Query: 593 KVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHA 652
            +FSK+DLRSGYHQ+++++ D  KTAF T+ G YE  VMPFG+TNAP  FM  MN++  +
Sbjct: 185 IIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRS 244

Query: 653 FLDRFVVVFIDDILIYSK 670
           F+ +FVVV+ DDILIY+K
Sbjct: 245 FIGKFVVVYFDDILIYNK 262


>At2g14640 putative retroelement pol polyprotein
          Length = 945

 Score =  140 bits (353), Expect = 5e-33
 Identities = 112/365 (30%), Positives = 176/365 (47%), Gaps = 48/365 (13%)

Query: 306 VFALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMV 365
           ++AL+G  T +  R +R T + N   L+A+I++G+TH FI    V  + L         V
Sbjct: 306 LYALEGVDTTSTIR-VRATIHRNR--LIALINSGSTHNFIGEKAVRGMNLKATTTKPFTV 362

Query: 366 VETPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLE-YNHVHINYFT 424
                  LV  S      ++ M G  F + L  LPL G+D+ +G+ WL        N+  
Sbjct: 363 RVVNGMPLVCRSRYEAIPVV-MGGVVFPVTLYALPLMGLDLAMGVQWLSTLGPTLCNWKE 421

Query: 425 KSVYFSSVEEE--------SGAEFLSTKQLKQMERDGILMYPL-MASLSFENQAVIDKLQ 475
           +++ F    +E        +G   +  K + +  R G  ++ + MA  S +      +++
Sbjct: 422 QTLQFHWAGDEVRLMGIKPTGLRGVEHKTITKKARMGHTIFAITMAHNSSDPNTPDGEIK 481

Query: 476 -VVCDFPEVFPDEIP-DVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLL 533
            ++ +F  +F  E P  +P ER +   I L  GT PV++ PYR +         Q +++ 
Sbjct: 482 KLIEEFAGLF--ETPTQLPSERPIVHRIALKKGTDPVNVRPYRYAFY-------QKDEMS 532

Query: 534 EKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAK 593
               +RPS SP+ +PVLL                        R+P+P +DD++D+L GA 
Sbjct: 533 RAGIIRPSSSPFLSPVLL-----------------------ERFPIPTVDDMLDELNGAV 569

Query: 594 VFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAF 653
            F+K+DL +GY Q+++   D+ K AF T  GHYEY VMPFG+ NAP  F   MN IF   
Sbjct: 570 YFTKLDLTAGYQQVRMHSPDIPKIAFQTHNGHYEYLVMPFGLCNAPSTFQALMNEIFWPL 629

Query: 654 LDRFV 658
           L R V
Sbjct: 630 LSRSV 634


>At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein
          Length = 587

 Score =  135 bits (340), Expect = 2e-31
 Identities = 61/105 (58%), Positives = 83/105 (78%)

Query: 566 RQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGH 625
           + +NK+TIK R+P+P++DD++D+L G+KVFSKIDLRSGYHQI+++  D  KT F ++ G 
Sbjct: 401 KAINKITIKYRFPIPQLDDMLDELSGSKVFSKIDLRSGYHQIRIRPGDEWKTDFKSKDGL 460

Query: 626 YEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
           YE++VMPFG++NAP  FM  MN+I   F   FVVV+ DDILIYSK
Sbjct: 461 YEWQVMPFGMSNAPSTFMRLMNQILRPFTGSFVVVYFDDILIYSK 505


>At4g08100 putative polyprotein
          Length = 1054

 Score =  127 bits (319), Expect = 5e-29
 Identities = 56/108 (51%), Positives = 79/108 (72%)

Query: 564 DYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRY 623
           D R +N +T+K R+P+PR+DD +D+L G+ +FSKIDL+SGYHQ ++K+ D  KTA  T+ 
Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586

Query: 624 GHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
             YE+ VMPFG+TNAP  FM  MN +    +  FV+V+ DDIL+YSK+
Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKN 634



 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 59/264 (22%), Positives = 100/264 (37%), Gaps = 19/264 (7%)

Query: 29  PAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVSLLPN--LDQ 86
           PAF G  +PD    W +++E +F   +C +  KV+    +    A  WW  L+ +    +
Sbjct: 97  PAFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALSWWDQLVTSRRRTR 156

Query: 87  DGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAEFYPHYAA 146
           D    TW        +R+ P    R+       L QG+  V EY   F+E+         
Sbjct: 157 DYPIKTWNQLKFVMRKRFVPSYYHRELHQRLRNLVQGSKTVEEY---FLEMETLMLRADL 213

Query: 147 ETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYKVVNERKTKGQ 206
           +    +   +F  GL  +I+  +E Q      ++++   ++E+  K      +  KT   
Sbjct: 214 QEDGEAVMSRFMGGLNREIQDRLETQHYVELEEMLHKAVMFEQQIKRKNARSSHTKTNYS 273

Query: 207 QSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRCGK 266
             +P  Y      G Q   +D +P  K  P ++       KG    V      + +RC K
Sbjct: 274 SGKPS-YQKEEKFGYQ---NDSKPFVKPKPVDL-----DPKGKGKEVITR--ARDIRCFK 322

Query: 267 K---GHIVADCKRNDIVCFNFNEE 287
                H  + C    I+    N E
Sbjct: 323 SQGLRHYASKCSNKRIMVHRDNGE 346


>At1g20390 hypothetical protein
          Length = 1791

 Score =  113 bits (283), Expect = 7e-25
 Identities = 60/163 (36%), Positives = 94/163 (56%), Gaps = 1/163 (0%)

Query: 508 KPVSMAPYRMSASELAKLKKQLEDLLEK-KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYR 566
           KPV     ++       + +++E LL+  + +      W A  ++VKKK+G  R+C+DY 
Sbjct: 776 KPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYT 835

Query: 567 QLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHY 626
            LNK   K+ YPLP ID L++   G  + S +D  SGY+QI +  +D +KT+F T  G Y
Sbjct: 836 DLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTY 895

Query: 627 EYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
            YKVM FG+ NA   +  ++N++    + R V V+IDD+L+ S
Sbjct: 896 CYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKS 938


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  112 bits (281), Expect = 1e-24
 Identities = 64/178 (35%), Positives = 100/178 (55%), Gaps = 8/178 (4%)

Query: 500 SIDLI-------LGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSP-WGAPVLL 551
           S+DLI       +G     +   ++       +  +++ LL+   +R    P W A  ++
Sbjct: 448 SVDLIFLSTLERMGISRADVNRRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVV 507

Query: 552 VKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKD 611
           VKKK+G  R+CID+  LNK   K+ +PLP ID L++   G ++ S +D  SGY+QI +  
Sbjct: 508 VKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNP 567

Query: 612 EDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
           ED +KT F T  G Y YKVMPFG+ NA   +   +N++F   + + + V+IDD+LI S
Sbjct: 568 EDQEKTLFITDRGIYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKS 625


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  110 bits (275), Expect = 6e-24
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 1/163 (0%)

Query: 508 KPVSMAPYRMSASELAKLKKQLEDLLEK-KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYR 566
           KP+     ++       + ++++ LL+    V      W    ++VKKK+G  R+CID+ 
Sbjct: 781 KPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFT 840

Query: 567 QLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHY 626
            LNK   K+ +PLP ID L++   G ++ S +D  SGY+QI +   D +KT F T  G Y
Sbjct: 841 DLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTY 900

Query: 627 EYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
            YKVMPFG+ NA   +   +N++F   LD  + V+IDD+L+ S
Sbjct: 901 CYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKS 943


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score =  105 bits (263), Expect = 1e-22
 Identities = 59/174 (33%), Positives = 94/174 (53%), Gaps = 19/174 (10%)

Query: 516 RMSASELAKLKKQLEDLLEKKFVRP-SVSPWGAPVLLVKKKDGSM--------------- 559
           R++++    +KK++  LL+   + P S S W +PV +V KK G +               
Sbjct: 381 RLNSNLRDVVKKEIMKLLDAGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTV 440

Query: 560 ---RLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 616
              R+CIDYR+LN  T K+ +PL  ID ++++L     +  +D   G+ QI +  +D +K
Sbjct: 441 TGHRMCIDYRKLNSATRKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEK 500

Query: 617 TAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
           T F+  YG + Y+ MPFG+ NAP  F   M  IF   ++ F+ VFIDD L+  +
Sbjct: 501 TTFTCPYGTFAYRRMPFGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQR 554


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  104 bits (260), Expect = 3e-22
 Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 34/208 (16%)

Query: 495  REVEFSIDLILGTKPV--------------SMAPYRMSASELAKL-KKQLEDLLEKKFVR 539
            + + +S+D I G  P               S+ P R     L ++ KK++  LL+   + 
Sbjct: 870  KAIGYSLDDIKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIY 929

Query: 540  P-SVSPWGAPVLLVKKKDGSM------------------RLCIDYRQLNKVTIKNRYPLP 580
            P S S W +PV  V KK G                    R+CI+YR+LN  + K  +PLP
Sbjct: 930  PISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLP 989

Query: 581  RIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPG 640
             ID ++++L     +  +D  SG+ QI +   D  KT F+  YG + YK MPFG+ NAP 
Sbjct: 990  FIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPA 1049

Query: 641  VFMEYMNRIFHAFLDRFVVVFIDDILIY 668
             F   M  IF   ++  V VF+DD  +Y
Sbjct: 1050 TFQRCMTSIFSDLIEEMVEVFMDDFSVY 1077


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.349    0.155    0.537 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,264,599
Number of Sequences: 26719
Number of extensions: 1194634
Number of successful extensions: 5416
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5054
Number of HSP's gapped (non-prelim): 226
length of query: 1478
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1366
effective length of database: 8,326,068
effective search space: 11373408888
effective search space used: 11373408888
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 67 (30.4 bits)