BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141111.1 - phase: 0 /pseudo
         (584 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g61670 unknown protein                                              30  4.9
At1g12130 hypothetical protein                                         30  4.9

>At1g61670 unknown protein
          Length = 513

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/66 (31%), Positives = 36/66 (53%), Gaps = 7/66 (10%)

Query: 342 LLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLR---VR*LLLSYV*NVLCLCLVVI 398
           +++LV+ +ALL    F+LW+ S L    R L KLQ++    +  L     N L + +++ 
Sbjct: 357 MIVLVIPVALL-DACFILWIFSSL---ARTLEKLQIKRNMAKLELYRNFTNALAISVLLS 412

Query: 399 LKWI*F 404
           + WI F
Sbjct: 413 IAWIGF 418


>At1g12130 hypothetical protein
          Length = 470

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 57 GFSGLCSARRIRKCGLVLISWPRKLMTGGLLFCLPLSRRELL 98
          G +GL +AR +R+ G  +  + R+   GGL  C P    +LL
Sbjct: 19 GAAGLVAARELRREGHTVTIFERQKQVGGLWVCTPNVEPDLL 60


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.364    0.163    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,943,526
Number of Sequences: 26719
Number of extensions: 332902
Number of successful extensions: 1734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 3
length of query: 584
length of database: 11,318,596
effective HSP length: 105
effective length of query: 479
effective length of database: 8,513,101
effective search space: 4077775379
effective search space used: 4077775379
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 63 (28.9 bits)