BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141110.1 + phase: 0 /pseudo
(143 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g43510 unknown protein 37 0.003
At2g23330 putative retroelement pol polyprotein 32 0.089
At2g20460 putative retroelement pol polyprotein 32 0.12
At1g43940 hypothetical protein 32 0.12
At4g02960 putative polyprotein of LTR transposon 32 0.15
At1g01540 unknown protein 31 0.26
At4g09480 unknown protein 30 0.34
At1g60020 hypothetical protein 30 0.44
At4g10460 putative retrotransposon 29 0.75
At3g24650 abscisic acid-insensitive protein 3 29 0.75
At5g21030 zwille/pinhead-like protein 29 0.98
At1g30240 hypothetical protein 29 0.98
At5g52010 unknown protein 28 1.3
At1g47650 hypothetical protein 28 1.3
At1g21280 unknown protein (At1g21280) 28 1.3
At4g17450 retrotransposon like protein 28 1.7
At2g15920 putative retroelement pol polyprotein 28 1.7
At2g13940 putative retroelement pol polyprotein 28 1.7
At3g45520 copia-like polyprotein 28 2.2
At5g61270 bHLH transcription factor like protein 27 2.9
>At3g43510 unknown protein
Length = 336
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/131 (22%), Positives = 56/131 (41%), Gaps = 10/131 (7%)
Query: 12 SLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLNDS 71
SLIE + +++ W+ M + L K YVL P P + LR+ + H +
Sbjct: 79 SLIETWRFDGRSYLSWASEMELFLKQMKLAYVLSEPYPGIGSGSSQDWLRDDYLCHNH-- 136
Query: 72 VEVSCIMLASMTPELQKQH--EGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
++ S++ +L +Q+ A ++ E LK +Y + + + + K+ E
Sbjct: 137 ------LMKSLSDDLYRQYLKRFKHAKELWEELKWVYRREESNSKMVQVRKYIDFKMVEE 190
Query: 130 GPVGPHVLKMI 140
PV V + I
Sbjct: 191 RPVLEQVQEFI 201
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 32.3 bits (72), Expect = 0.089
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 4 NASTNILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPE 50
NAS N +LI L E N+ +WS ++ L ++KL +DG IP+
Sbjct: 25 NASDNP-GALISSVVLKENNYAEWSEELQNFLRAKQKLGFIDGSIPK 70
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 32.0 bits (71), Expect = 0.12
Identities = 16/36 (44%), Positives = 21/36 (57%)
Query: 14 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIP 49
I +L ET + DWS MRI L + KL +DG +P
Sbjct: 78 IISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLP 113
>At1g43940 hypothetical protein
Length = 171
Score = 32.0 bits (71), Expect = 0.12
Identities = 15/39 (38%), Positives = 22/39 (55%)
Query: 12 SLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPE 50
+LI + L N+ WS N+R+ L +KK DG IP+
Sbjct: 98 TLISQPLLPRPNYDKWSINIRLALQAQKKFGFADGSIPK 136
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 31.6 bits (70), Expect = 0.15
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 6 STNILR-SLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAH 64
+TNIL ++ KLT TN++ WSR + + + LDG P P + A+ +
Sbjct: 12 NTNILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVN 71
Query: 65 AKHL----NDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLY 106
+ D + S I+ A TA + E L+ +Y
Sbjct: 72 PDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIY 117
>At1g01540 unknown protein
Length = 472
Score = 30.8 bits (68), Expect = 0.26
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 21 ETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLNDSVEVSCIMLA 80
ETN +DW ++M + + + V+D IPE P +S AL+ V + L
Sbjct: 364 ETNLVDWLKSM---VGNRRSEEVVDPKIPEPP---SSKALK-----------RVLLVALR 406
Query: 81 SMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGG 130
+ P+ K+ + M+E LY ++ R R S+ T + G
Sbjct: 407 CVDPDANKRPKMGHIIHMLEAEDLLYRDERRTTRDHGSRERQETAVVAAG 456
>At4g09480 unknown protein
Length = 301
Score = 30.4 bits (67), Expect = 0.34
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 13 LIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAP 52
L+ + + F W R++R+ L KL +DG IP+ P
Sbjct: 38 LVSDRPSSGSEFHSWRRSVRMALNVRNKLGFIDGTIPQPP 77
>At1g60020 hypothetical protein
Length = 1194
Score = 30.0 bits (66), Expect = 0.44
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 18 KLTETNFIDWSRNMRIVLTHEKKLYVLDG----PIPEAPPAGASAALRNAHAKHLNDSVE 73
KLT TN+I W+R + +L +DG P AG SAA D +
Sbjct: 30 KLTPTNYIMWNRQVHALLDGYDLAGYIDGSVTAPSEMITTAGVSAANPAYKFWKRQDKLI 89
Query: 74 VSCIMLASMTPELQKQHEGMTAFDMIEHLKTLY 106
S I+ T TA ++ E LK++Y
Sbjct: 90 YSAILGTITTTIQPLLSRSNTAAEIWEKLKSIY 122
>At4g10460 putative retrotransposon
Length = 1230
Score = 29.3 bits (64), Expect = 0.75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 75 SCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSE 128
S I+L+ L+K + TA M+E L LY +A R + + L+S K+ E
Sbjct: 74 STIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQE 127
>At3g24650 abscisic acid-insensitive protein 3
Length = 720
Score = 29.3 bits (64), Expect = 0.75
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 46 GPIPEAPPAGASAALRNAHAKHLNDSVEVSCIMLASMTPELQK 88
G PEAPP+ A+ +N +++N++ + +++AS T + K
Sbjct: 678 GQKPEAPPSSAATKRQNKSQRNINNNSPSANVVVASPTSQTVK 720
>At5g21030 zwille/pinhead-like protein
Length = 850
Score = 28.9 bits (63), Expect = 0.98
Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 5/72 (6%)
Query: 11 RSLIEKEKLTETNFIDWSRNMRIVLTHEKKLY---VLDGPIPEAPPAGASAALRNAHAKH 67
RS ++ + ET + + R+ L H+ K + +L P PE P + AL+ KH
Sbjct: 113 RSSLDFSVVLETAPSRRNADKRLKLPHQSKKFNVAILFAP-PEIPMEAIANALQGKKTKH 171
Query: 68 LNDSVEV-SCIM 78
L D++ V CI+
Sbjct: 172 LLDAIRVMDCIL 183
>At1g30240 hypothetical protein
Length = 873
Score = 28.9 bits (63), Expect = 0.98
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 8 NILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKH 67
N+L + EK TNF+ S+ + + TH+ + E+PPA L
Sbjct: 22 NLLSEYVPNEKQPLTNFLSLSKVVSTISTHKL--------LSESPPASIDQKLHAKSKSA 73
Query: 68 LNDSVEVSCIMLASMTPE 85
++D V +++S P+
Sbjct: 74 VDDWVARLSALISSDMPD 91
>At5g52010 unknown protein
Length = 396
Score = 28.5 bits (62), Expect = 1.3
Identities = 35/128 (27%), Positives = 50/128 (38%), Gaps = 25/128 (19%)
Query: 18 KLTETNFIDWSRNMR-IVLTHEKKLYVL---DGPIPEAPPAGASAALRNAHAKHLNDSVE 73
K ++ ID RN I EKK+ VL D P PP A+ ALR A+ L VE
Sbjct: 52 KSASSSEIDMVRNKEGIFAPKEKKVVVLWDLDNKPPRGPPYEAATALRKV-AEKLGRVVE 110
Query: 74 VSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPVG 133
+S + AF + H + EE+ D F + E P+
Sbjct: 111 ISA-------------YANRHAFIHLPH--WVVEERRERRNLD-----FMERKGEVTPID 150
Query: 134 PHVLKMIG 141
P++ + G
Sbjct: 151 PYICGVCG 158
>At1g47650 hypothetical protein
Length = 1409
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/36 (38%), Positives = 20/36 (54%)
Query: 14 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIP 49
I +L ETN+ DW+ M I L + K +DG +P
Sbjct: 77 IISHRLDETNYGDWNVAMLISLDAKNKSGFIDGTLP 112
>At1g21280 unknown protein (At1g21280)
Length = 237
Score = 28.5 bits (62), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 14 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPP 53
I+K E N++ W R L KK +DG +P+ P
Sbjct: 32 IQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDP 71
>At4g17450 retrotransposon like protein
Length = 1433
Score = 28.1 bits (61), Expect = 1.7
Identities = 13/31 (41%), Positives = 19/31 (60%)
Query: 19 LTETNFIDWSRNMRIVLTHEKKLYVLDGPIP 49
L TN+ +WS MR+ L + KL +DG +P
Sbjct: 85 LDGTNYNNWSIAMRMSLDAKNKLSFVDGSLP 115
>At2g15920 putative retroelement pol polyprotein
Length = 1100
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/36 (38%), Positives = 20/36 (54%)
Query: 14 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIP 49
I +L ETN+ DW+ M I L + K +DG +P
Sbjct: 30 IISHRLDETNYGDWNVAMLISLDVKNKSGFIDGTLP 65
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (50%)
Query: 5 ASTNILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPP 53
AS++ ++I +L N+ W+ M L ++K ++G IP PP
Sbjct: 35 ASSDNPGAVISSVELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPP 83
>At3g45520 copia-like polyprotein
Length = 1363
Score = 27.7 bits (60), Expect = 2.2
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 75 SCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSE 128
S I+L+ L+K + +A M+E L LY +A R + + L+S K+SE
Sbjct: 76 STIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKMSE 129
>At5g61270 bHLH transcription factor like protein
Length = 366
Score = 27.3 bits (59), Expect = 2.9
Identities = 15/51 (29%), Positives = 22/51 (42%)
Query: 55 GASAALRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTL 105
G +AA+ N + D + L + P K + D+IEHLK L
Sbjct: 165 GRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQL 215
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,083,753
Number of Sequences: 26719
Number of extensions: 112531
Number of successful extensions: 316
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 36
length of query: 143
length of database: 11,318,596
effective HSP length: 89
effective length of query: 54
effective length of database: 8,940,605
effective search space: 482792670
effective search space used: 482792670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC141110.1