BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.11 - phase: 0
(363 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21710 8-oxoguanine DNA glycosylase-like protein 426 e-120
At3g47825 hypothetical protein 54 2e-07
At1g05901 endonuclease III - like protein 37 0.022
At2g31450 endonuclease like protein 35 0.064
At2g21230 bZIP transcription factor AtbZip30 32 0.54
At3g10010 hypothetical protein 31 1.2
At1g64260 hypothetical protein 31 1.2
At5g52440 HCF106 (gb|AAD32652.1) 30 1.6
At5g41460 unknown protein 30 2.7
At5g59270 receptor-like protein kinase 29 3.5
At4g32710 putative protein kinase 29 3.5
At3g50180 putative protein 29 3.5
At1g80070 hypothetical protein 29 3.5
At1g28240 Unknown protein 29 3.5
At5g60050 unknown protein 29 4.6
At5g48360 unknown protein 29 4.6
At5g08230 putative protein 29 4.6
At3g50130 putative protein 29 4.6
At2g20880 AP2 domain transcription factor 29 4.6
At4g04050 putative transposon protein 28 6.0
>At1g21710 8-oxoguanine DNA glycosylase-like protein
Length = 365
Score = 426 bits (1096), Expect = e-120
Identities = 212/330 (64%), Positives = 255/330 (77%), Gaps = 7/330 (2%)
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQY 72
PP PP TP Q H T K W PL +T EL+LPLTFPTGQTFRWK T QY
Sbjct: 18 PPLSPPVTPILK--QKLHRTGTPK---WFPLKLTHTELTLPLTFPTGQTFRWKKTGAIQY 72
Query: 73 TGVVGSHLISLKHLHNGD-VCYTLHSQSPSNDDCKTALLDFLNADVSLADTWKVFSDSDE 131
+G +G HL+SL+ D V Y +H S S + ALLDFLNA++SLA+ W FS D
Sbjct: 73 SGTIGPHLVSLRQRPGDDAVSYCVHC-STSPKSAELALLDFLNAEISLAELWSDFSKKDP 131
Query: 132 RFAELAQHLSGARVLRQDPFECLIQFMCSSNNHISRITKMVDYVSSLGTYLGCVEGFDFH 191
RF ELA+HL GARVLRQDP ECLIQF+CSSNN+I+RITKMVD+VSSLG +LG ++GF+FH
Sbjct: 132 RFGELARHLRGARVLRQDPLECLIQFLCSSNNNIARITKMVDFVSSLGLHLGDIDGFEFH 191
Query: 192 AFPTLNQLSLVSEQQLRDAGFGYRAKYITGTVNVLQSKPEGGEEWLYSLRKLELEDVISE 251
FP+L++LS VSE++ R AGFGYRAKYITGTVN LQ+KP GG EWL SLRK+EL++ ++
Sbjct: 192 QFPSLDRLSRVSEEEFRKAGFGYRAKYITGTVNALQAKPGGGNEWLLSLRKVELQEAVAA 251
Query: 252 LIKLPGVGPKVAACIALYSLDQHHAIPVDVHIWRIAQKYILPELAGSKLTQKLHSRVAEA 311
L LPGVGPKVAACIAL+SLDQH AIPVD H+W+IA Y+LP+LAG+KLT KLH RVAEA
Sbjct: 252 LCTLPGVGPKVAACIALFSLDQHSAIPVDTHVWQIATNYLLPDLAGAKLTPKLHGRVAEA 311
Query: 312 FVTKFGKYAGWAQAVLFIAELPSQKAILPS 341
FV+K+G+YAGWAQ +LFIAELP+QK +L S
Sbjct: 312 FVSKYGEYAGWAQTLLFIAELPAQKTLLQS 341
>At3g47825 hypothetical protein
Length = 293
Score = 53.5 bits (127), Expect = 2e-07
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 196 LNQLSLVSEQQLRDAGFG-YRAKYITGTVNVLQSKPEGGEEWLYSLRKLELEDVISELIK 254
LN S E +R G +A I +N LQ+ E G L LR L +E+V +EL
Sbjct: 132 LNAESKSIENAIRCGGLAPKKAVCIKNILNRLQN--ERGRLCLEYLRGLSVEEVKTELSH 189
Query: 255 LPGVGPKVAACIALYSLDQHHAIPVDVHIWRIAQ 288
GVGPK +C+ +++L QH+ PVD H++ IA+
Sbjct: 190 FKGVGPKTVSCVLMFNL-QHNDFPVDTHVFEIAK 222
>At1g05901 endonuclease III - like protein
Length = 386
Score = 36.6 bits (83), Expect = 0.022
Identities = 16/46 (34%), Positives = 26/46 (55%)
Query: 244 ELEDVISELIKLPGVGPKVAACIALYSLDQHHAIPVDVHIWRIAQK 289
++ + EL+ LPGVGPK+A + + + I VD H+ RI +
Sbjct: 255 DIPRTLEELLSLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNR 300
>At2g31450 endonuclease like protein
Length = 352
Score = 35.0 bits (79), Expect = 0.064
Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 2/68 (2%)
Query: 244 ELEDVISELIKLPGVGPKVAACIALYSLDQHHAIPVDVHIWRIAQKYILPELAGS--KLT 301
++ + +L+ LPG+GPK+A I + + I VD H+ RI + G+ K T
Sbjct: 221 DIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNRLGWVSRPGTKQKTT 280
Query: 302 QKLHSRVA 309
+RVA
Sbjct: 281 SPEETRVA 288
>At2g21230 bZIP transcription factor AtbZip30
Length = 519
Score = 32.0 bits (71), Expect = 0.54
Identities = 30/101 (29%), Positives = 47/101 (45%), Gaps = 13/101 (12%)
Query: 13 PPPLPPSTP--PTPHT-QTRHSTNLSKSRAWI------PLNITRQELSLPLTFPTGQTFR 63
PPP+PP +P P T Q RHS ++S+ ++ PLN + +S+ + TG F
Sbjct: 54 PPPIPPISPYSQIPATLQPRHSRSMSQPSSFFSFDSLPPLNPSAPSVSVSVEEKTGAGFS 113
Query: 64 WKNTAPSQYTGVVGSHLISLKHLHNGDVCYTLHSQSPSNDD 104
+ PS +T H S ++ +G+ S SN D
Sbjct: 114 -PSLPPSPFT---MCHSSSSRNAGDGENLPPRKSHRRSNSD 150
>At3g10010 hypothetical protein
Length = 1309
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 235 EWLYSLRKLELEDVISELIKLPGVGPKVAACIALYSLDQHHAIPVDVHIWRIA 287
EWL R + + L+ + G+G K C+ L SL Q A PVD ++ RIA
Sbjct: 862 EWL---RDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQ-IAFPVDTNVGRIA 910
>At1g64260 hypothetical protein
Length = 1490
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 12 LPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFP 57
LPP +PPS PP+P T T+ +KS A + L ++LS L P
Sbjct: 718 LPPVIPPSPPPSPPTYV-SVTSPAKSLAKVKLLPFLKDLSFFLRHP 762
>At5g52440 HCF106 (gb|AAD32652.1)
Length = 260
Score = 30.4 bits (67), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 2 SKRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKS 37
++ + +P++ PPP PPS P T T + N S+S
Sbjct: 158 NQNRTNPVQPPPPPPPPSVPSTEAPVTANDPNDSQS 193
>At5g41460 unknown protein
Length = 524
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/83 (27%), Positives = 31/83 (36%), Gaps = 29/83 (34%)
Query: 13 PPPLPPSTPPTPHTQTRH-----------------------STNLSKSRAWIPLNITRQ- 48
PPP PP PP P T +H N +S W+ +T +
Sbjct: 97 PPPSPPPPPPPPQTGFQHVVFGIAASARLWKQRKEYIKIWYKPNQMRSYVWLEKPVTEED 156
Query: 49 ---ELSLPLTFPTGQT--FRWKN 66
E+SLP +G T F +KN
Sbjct: 157 EEDEISLPPVKISGDTSKFPYKN 179
>At5g59270 receptor-like protein kinase
Length = 668
Score = 29.3 bits (64), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 6 RSPIKSLPPPLPPSTPPTPHTQTRHSTNL 34
R P S PPP PP P P ++++ S N+
Sbjct: 265 RPPPPSSPPPPPPPPPTPPTSRSKDSKNI 293
>At4g32710 putative protein kinase
Length = 731
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 8 PIKSLPPPLPPSTPPTP-HTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWKN 66
PI+S PPPL S PP P + + S ++S PL + S P + P +T N
Sbjct: 75 PIESPPPPLLESPPPPPLESPSPPSPHVSAPSGSPPLPFLPAKPSPPPSSPPSETVPPGN 134
Query: 67 T 67
T
Sbjct: 135 T 135
>At3g50180 putative protein
Length = 588
Score = 29.3 bits (64), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 3 KRKRSPIKSLPPPLPPSTPPTP 24
+R+R+P PPP PP PP P
Sbjct: 20 RRQRAPPPQPPPPPPPPPPPPP 41
>At1g80070 hypothetical protein
Length = 2382
Score = 29.3 bits (64), Expect = 3.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 11 SLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITR 47
+LPPP P+ P P + + K+R W+ LN R
Sbjct: 32 ALPPPSNPTPPVEPTPEEAEAKLEEKARKWMQLNSKR 68
>At1g28240 Unknown protein
Length = 581
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 1/39 (2%)
Query: 4 RKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIP 42
R+R P+ + PPP PPS PP + +S RA P
Sbjct: 517 RQRPPVPNFPPP-PPSPPPPVLISSDLPRKMSSGRATPP 554
>At5g60050 unknown protein
Length = 499
Score = 28.9 bits (63), Expect = 4.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 4 RKRSPIK--SLPPPLPPSTPPTPHTQTRHSTNL 34
R SPIK + PPLPP PP P+ T + L
Sbjct: 26 RISSPIKLSTASPPLPPPPPPPPNESTLSNPTL 58
>At5g48360 unknown protein
Length = 782
Score = 28.9 bits (63), Expect = 4.6
Identities = 11/19 (57%), Positives = 13/19 (67%)
Query: 8 PIKSLPPPLPPSTPPTPHT 26
P++S PP PP PPTP T
Sbjct: 54 PLESSPPSPPPPLPPTPPT 72
>At5g08230 putative protein
Length = 1445
Score = 28.9 bits (63), Expect = 4.6
Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 7/83 (8%)
Query: 8 PIKSLPPPLPPSTPPTPHTQTRHSTNL--SKSRAWIPLNITRQELSLPLTFPTGQTFRWK 65
P S PP L P+ PP+ H + L ++S A P +ITR + + P F
Sbjct: 1145 PPPSSPPQLAPAPPPSDHCLPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGF--- 1201
Query: 66 NTAPSQYTGVVGSHLISLKHLHN 88
AP Y + + IS++ H+
Sbjct: 1202 --APPAYPLLQHEYQISMQRDHS 1222
>At3g50130 putative protein
Length = 564
Score = 28.9 bits (63), Expect = 4.6
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 3 KRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELS-LPLTFPTGQT 61
K+K + PPPLPP+ P P R+S ++ P I + + LT Q
Sbjct: 42 KKKSKSLPPPPPPLPPARPFGPILPWRYSVKRKRTNRPQPSTIQKDMFTWYFLTLMMRQK 101
Query: 62 FRWKNTAPSQ 71
+ +N P +
Sbjct: 102 LQKQNQKPEE 111
>At2g20880 AP2 domain transcription factor
Length = 336
Score = 28.9 bits (63), Expect = 4.6
Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 4/51 (7%)
Query: 29 RHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQYTGVVGSH 79
R LS S + +N+ RQE LPLT P Q F +A Y GV H
Sbjct: 148 RDILKLSPSGRMMMMNMLRQESDLPLTRPPVQPF----SATKLYRGVRQRH 194
>At4g04050 putative transposon protein
Length = 681
Score = 28.5 bits (62), Expect = 6.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSL 52
PP LP P +T TR+ T S R IP N T+Q S+
Sbjct: 213 PPLLPMGCSPPRYTCTRNQTTASSFR--IPGNSTQQRTSI 250
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,621,715
Number of Sequences: 26719
Number of extensions: 375431
Number of successful extensions: 2689
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2622
Number of HSP's gapped (non-prelim): 61
length of query: 363
length of database: 11,318,596
effective HSP length: 101
effective length of query: 262
effective length of database: 8,619,977
effective search space: 2258433974
effective search space used: 2258433974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC140916.11