BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.1 - phase: 0
(108 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41310 putative two-component response regulator 3 protein 72 5e-14
At1g59940 putative protein 68 9e-13
At3g57040 responce reactor 4 67 2e-12
At5g62920 response regulator 6 (ARR6) 66 2e-12
At1g10470 putative response regulator 3 66 3e-12
At1g19050 putative protein 65 6e-12
At3g48100 response reactor 2 (ATRR2) 64 9e-12
At1g74890 putative response regulator (two component phosphotran... 64 1e-11
At3g56380 response regulator-like protein 62 5e-11
At2g40670 putative two-component response regulator protein 57 2e-09
At5g35750 histidine kinase (AHK2) 34 0.011
At2g35990 unknown protein 31 0.089
At3g04580 putative ethylene receptor 31 0.12
At2g01830 cytokinin receptor CRE1b (CRE1) 30 0.15
At5g12960 unknown protein 30 0.26
At2g25180 putative two-component response regulator protein 30 0.26
At1g66340 ethylene-response protein, ETR1 30 0.26
At3g16855 ARR1 protein, putative, 3' partial 28 0.58
At3g60840 putative protein 27 1.3
At1g23880 unknown protein 27 1.3
>At2g41310 putative two-component response regulator 3 protein
Length = 225
Score = 72.0 bits (175), Expect = 5e-14
Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILES 78
+ FHVLAVDDS+ DR ++ERLL+ SSC+VT VDSG KAL++LGL +D+ S
Sbjct: 6 ESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNAL----S 61
Query: 79 SSPSLPQPLQLQEVI 93
+SP + Q +++ +I
Sbjct: 62 TSPQIHQEVEINLII 76
>At1g59940 putative protein
Length = 231
Score = 67.8 bits (164), Expect = 9e-13
Identities = 32/57 (56%), Positives = 46/57 (80%)
Query: 11 QLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDE 67
+L+ L + HVLAVDDS++DR+++ERLLR +SCKVT VDSG +AL++LGL+ D+
Sbjct: 22 ELESPPLDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDK 78
>At3g57040 responce reactor 4
Length = 234
Score = 66.6 bits (161), Expect = 2e-12
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILES 78
+ FHVLAVDDS+ DR L+ERLL+ SSC+VT VDSG KAL++LGL S+ ++ S
Sbjct: 6 ESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAF--S 63
Query: 79 SSPSLPQPLQLQEVI 93
+P Q +++ +I
Sbjct: 64 KAPVNHQVVEVNLII 78
>At5g62920 response regulator 6 (ARR6)
Length = 186
Score = 66.2 bits (160), Expect = 2e-12
Identities = 35/65 (53%), Positives = 47/65 (71%), Gaps = 3/65 (4%)
Query: 8 RKLQLQPQNLK---QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
RK+++ + K + HVLAVDDS +DR +ERLLR SSCKVT VDS +AL+YLGL+
Sbjct: 8 RKMEILNHSSKFGSPDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLD 67
Query: 65 IDEIS 69
++E S
Sbjct: 68 VEEKS 72
>At1g10470 putative response regulator 3
Length = 259
Score = 65.9 bits (159), Expect = 3e-12
Identities = 34/67 (50%), Positives = 50/67 (73%), Gaps = 7/67 (10%)
Query: 4 GLDSRKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
G++S L L + HVLAVDDS++DR+++ERLLR +SCKVT VDSG +AL++LGL
Sbjct: 23 GIESAPLDL-------DEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGL 75
Query: 64 NIDEISS 70
+ ++ S+
Sbjct: 76 DNEKASA 82
>At1g19050 putative protein
Length = 206
Score = 65.1 bits (157), Expect = 6e-12
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
HVLAVDDS++DR ++ERLLR SSCKVT V+SG +AL+YLGL+
Sbjct: 25 HVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLD 66
>At3g48100 response reactor 2 (ATRR2)
Length = 184
Score = 64.3 bits (155), Expect = 9e-12
Identities = 32/48 (66%), Positives = 39/48 (80%)
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISS 70
HVLAVDDS++DR +ERLLR SSCKVT VDS +AL+YLGL+ + SS
Sbjct: 26 HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSS 73
>At1g74890 putative response regulator (two component
phosphotransfer signaling)
Length = 206
Score = 63.9 bits (154), Expect = 1e-11
Identities = 33/63 (52%), Positives = 43/63 (67%)
Query: 8 RKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDE 67
R L + HVLAVDDS +DR ++ERLL+ S+CKVT V+SG +AL+YLGL+ D
Sbjct: 4 RDLSSSLSSSSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDN 63
Query: 68 ISS 70
SS
Sbjct: 64 GSS 66
>At3g56380 response regulator-like protein
Length = 153
Score = 62.0 bits (149), Expect = 5e-11
Identities = 28/59 (47%), Positives = 46/59 (77%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILE 77
+E HVLAVDD++IDR L+ER+L+ SSCKVT ++G +AL+YLGL + + + +++++
Sbjct: 17 EEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMK 75
>At2g40670 putative two-component response regulator protein
Length = 164
Score = 56.6 bits (135), Expect = 2e-09
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 20 EHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
E HVLAVDD++IDR L+ERLL+ S CKVT ++ +AL+YLGL
Sbjct: 27 EELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGL 70
>At5g35750 histidine kinase (AHK2)
Length = 1176
Score = 34.3 bits (77), Expect = 0.011
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYL 61
+L VDD++++R + E L+ VTCV+SG AL L
Sbjct: 1037 ILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAML 1074
>At2g35990 unknown protein
Length = 181
Score = 31.2 bits (69), Expect = 0.089
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 55 DKALKYLGLNIDE--ISSTKSSILESSSPSLPQPLQLQEVIILIF-FFLIL 102
D L ++ +DE +SST I+ S+ P+ PQ LQL EV + F +FLI+
Sbjct: 126 DSLLTFIDKAVDEGFVSSTARRIIVSA-PNAPQLLQLLEVFLFAFHYFLII 175
>At3g04580 putative ethylene receptor
Length = 766
Score = 30.8 bits (68), Expect = 0.12
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 9 KLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEI 68
+LQ N + DD ++R + +RLL C+VT V SG + L L N++
Sbjct: 629 ELQHPNSNSILRGLRITLADDDDVNRTVTKRLLEKLGCEVTAVSSGFECLNALS-NVE-- 685
Query: 69 SSTKSSILESSSPSL 83
S + IL+ P +
Sbjct: 686 MSYRVVILDLQMPEM 700
>At2g01830 cytokinin receptor CRE1b (CRE1)
Length = 844
Score = 30.4 bits (67), Expect = 0.15
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYL 61
+L VDD++++R + L+ +V C +SG AL L
Sbjct: 711 ILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLL 748
Score = 26.2 bits (56), Expect = 2.9
Identities = 12/42 (28%), Positives = 25/42 (58%), Gaps = 5/42 (11%)
Query: 58 LKYLGLNIDEISSTKSSIL-----ESSSPSLPQPLQLQEVII 94
+K LG+N+D ++S K++++ E + LP QL +++
Sbjct: 568 MKRLGINVDVVTSLKTAVVAAAAFERNGSPLPTKPQLDMILV 609
>At5g12960 unknown protein
Length = 865
Score = 29.6 bits (65), Expect = 0.26
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 5 LDSRKLQLQPQNLKQE---HFHVLAVDDSVIDRMLLERLLRDSS 45
L S LQ Q NLK E H+H+ DDS +L ++L++ +
Sbjct: 43 LRSELLQSQNANLKSEEFSHYHLTPTDDSAWSTLLPRKMLKEET 86
>At2g25180 putative two-component response regulator protein
Length = 573
Score = 29.6 bits (65), Expect = 0.26
Identities = 19/52 (36%), Positives = 25/52 (47%)
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSI 75
VLAVDD +LE LLR VT + KAL+ L N ++ S +
Sbjct: 19 VLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDV 70
>At1g66340 ethylene-response protein, ETR1
Length = 738
Score = 29.6 bits (65), Expect = 0.26
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 9 KLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALK 59
K+ P++ VL +D++ + RM+ + LL C+VT V S ++ L+
Sbjct: 597 KVPAIPRHSNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLR 647
>At3g16855 ARR1 protein, putative, 3' partial
Length = 95
Score = 28.5 bits (62), Expect = 0.58
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
VL VDD M+LER+LR +VT + + AL L N
Sbjct: 38 VLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKN 78
>At3g60840 putative protein
Length = 648
Score = 27.3 bits (59), Expect = 1.3
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 1 MELGLDSRKLQLQPQNLKQEHFHVLAVDDSVID-RMLLERL 40
+EL SRK+ + + LK E+F V A++ V D LLE++
Sbjct: 291 LELEEISRKMHMATEVLKSENFSVEAIESGVKDPEQLLEQI 331
>At1g23880 unknown protein
Length = 485
Score = 27.3 bits (59), Expect = 1.3
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 44 SSCKVTCVDSGDKALKYLGLNIDEISSTKSSILESSSPSLPQPLQLQEVIILIFFFLILK 103
SSC + +D G++A++ + L+ D+ + S PL + ++ +FF +L
Sbjct: 211 SSCSLLVIDRGNQAIREIQLHFDDCADQYGSGF---------PLGIAVLVAAVFFGYMLA 261
Query: 104 SFQLR 108
Q R
Sbjct: 262 LLQRR 266
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.139 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,215,333
Number of Sequences: 26719
Number of extensions: 80088
Number of successful extensions: 332
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 43
length of query: 108
length of database: 11,318,596
effective HSP length: 84
effective length of query: 24
effective length of database: 9,074,200
effective search space: 217780800
effective search space used: 217780800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC140916.1