BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140913.1 - phase: 0 /pseudo
         (695 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g41580 transcription factor-like protein                            81  2e-15
At4g03970 hypothetical protein                                         32  1.2
At5g02410 unknown protein                                              31  2.0
At2g10350 hypothetical protein                                         31  2.0
At1g44880 hypothetical protein                                         31  2.0

>At5g41580 transcription factor-like protein
          Length = 760

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 41/96 (42%), Positives = 60/96 (61%)

Query: 17  AMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNLCLSLSRGIDYALANGE 76
           A T      + SLVN +R+  V +RL  H   G + D  EF   C+S ++GID+A+AN +
Sbjct: 11  AGTGLREKTAASLVNSFRLASVTQRLRYHIQDGAKVDPKEFQICCISFAKGIDFAIANND 70

Query: 77  VPLKANELPILMKQMYQRKTDDHSQAAVMVLMISVK 112
           +P K  E P L+KQ+ +  TD +++ A+MVLMISVK
Sbjct: 71  IPKKVEEFPWLLKQLCRHGTDVYTKTALMVLMISVK 106


>At4g03970 hypothetical protein
          Length = 817

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 17/120 (14%)

Query: 167 NWVQ*-SCQLKPSLVMELLLLTSISQRIMFIQIKKFGYWWPKLIT--LRSLHASSALSK* 223
           NWV     ++  SL+ + L  T  +QR  F+Q      W+   +   L+S  A+   S+ 
Sbjct: 647 NWVSTLHMEVLVSLLSQKLATTLTNQRAAFVQP-----WFANHLQGKLKSFKAAKMKSRV 701

Query: 224 TFS*MEKEFIQGPTFEWILDHRCPPV*LVSLNLGQIF-FKLWVSSMGIILYLLPI*VLDP 282
            +S   K+FI GP  EW  D       + ++ L  I+  K WV  + I L +  + +LDP
Sbjct: 702 KWSEPMKQFIVGPNTEWFAD-------IDTIYLPMIWDSKHWV-GLAINLGVWSVEILDP 753


>At5g02410 unknown protein
          Length = 509

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 450 LMKLQIESLFRLLLLLAFK*RRTFGLVFILPTVGLVPLQLLLRFLNWLMLFLLYLI 505
           L+ + + S F +L LLA   R+T+ LV+ L T G++    L+ F  + + F L+++
Sbjct: 406 LVPVYVYSWFSILTLLAKTRRQTWILVYFLATCGVLVPTPLIEFRYYTIPFYLFML 461


>At2g10350 hypothetical protein
          Length = 863

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 167 NWVQ*-SCQLKPSLVMELLLLTSISQRIMFIQIKKFGYWWPKLIT--LRSLHASSALSK* 223
           NWV     ++  SL+ + L  T  +QR  F+Q      W+   +   L+S  A+   S+ 
Sbjct: 643 NWVSTLHMEVLVSLLSQKLATTLTNQRAAFVQP-----WFANHLQGKLKSFKAAKIKSRV 697

Query: 224 TFS*MEKEFIQGPTFEWILD 243
            +S   K+FI GP  EW  D
Sbjct: 698 KWSEPMKQFIIGPNTEWFTD 717


>At1g44880 hypothetical protein
          Length = 1038

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 32/108 (29%), Positives = 51/108 (46%), Gaps = 16/108 (14%)

Query: 178 SLVMELLLLTSISQRIMFIQIKKFGYWWPKLIT--LRSLHASSALSK*TFS*MEKEFIQG 235
           SL+ + L  T  +QR  F+Q      W+   +   L+S  A+   S+  +S   K+FI G
Sbjct: 866 SLLSQKLATTLTNQRAAFVQP-----WFANHLQGKLKSFKAAKMKSRVKWSEPMKQFIVG 920

Query: 236 PTFEWILDHRCPPV*LVSLNLGQIF-FKLWVSSMGIILYLLPI*VLDP 282
           P  EW  D       + ++ L  I+  K WV  + I L +  + +LDP
Sbjct: 921 PNTEWFAD-------IDTIYLPMIWDSKHWV-GLAINLGVWSVEILDP 960


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.357    0.160    0.557 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,725,397
Number of Sequences: 26719
Number of extensions: 449668
Number of successful extensions: 1998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 6
length of query: 695
length of database: 11,318,596
effective HSP length: 106
effective length of query: 589
effective length of database: 8,486,382
effective search space: 4998478998
effective search space used: 4998478998
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 64 (29.3 bits)