Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.4 + phase: 0 /pseudo
         (1194 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g04050 putative transposon protein                                  83  1e-15
At2g14380 putative retroelement pol polyprotein                        78  3e-14
At2g13330 F14O4.9                                                      76  1e-13
At1g20390 hypothetical protein                                         76  1e-13
At4g20490 putative protein                                             75  2e-13
At4g03800                                                              61  4e-09
At1g34080 putative protein                                             60  1e-08
At1g37200 hypothetical protein                                         44  6e-04
At2g15100 putative retroelement pol polyprotein                        39  0.014
At3g31530 hypothetical protein                                         39  0.018
At1g36830 hypothetical protein                                         39  0.018
At2g11940 putative retroelement gag/pol polyprotein                    38  0.030
At2g15410 putative retroelement pol polyprotein                        37  0.052
At4g08050                                                              37  0.088
At4g07780 putative athila transposon protein                           36  0.15
At2g10670 pseudogene                                                   36  0.15
At1g37070 hypothetical protein                                         36  0.15
At2g10660 putative Athila retroelement ORF1 protein                    34  0.44
At1g36560 hypothetical protein                                         34  0.44
At4g03790 putative athila-like protein                                 33  0.98

>At4g04050 putative transposon protein
          Length = 681

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 41/117 (35%), Positives = 69/117 (58%)

Query: 2   LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
           L I+  +    ++ +++D G++V++L      ++G  DS+L+     LT + G +  SLG
Sbjct: 539 LVIRIDVGNYELSHIMIDTGSSVDVLFYDAFKRMGHLDSELQGRKTPLTGFAGDTTFSLG 598

Query: 62  AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGL 118
            I+L  +    +R+T+F+VV  KA FN +LGR W+H + AVPST HQ I    + G+
Sbjct: 599 TIQLPTIARGVRRLTSFLVVNKKAPFNAILGRPWLHAMKAVPSTYHQCIKFPSDKGI 655


>At2g14380 putative retroelement pol polyprotein
          Length = 764

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 1/127 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL I+  I    V ++L+D G++VN++ +  L K+ ++D  +KP    LT ++G++  + 
Sbjct: 347 PLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLTGFDGNTMMTN 406

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G IKL + +G       F+VV     +N++LG  WIH + A+PS+ HQ I I    G +E
Sbjct: 407 GTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCIKIPTSIG-IE 465

Query: 121 NVEADQS 127
            +  +Q+
Sbjct: 466 TIRGNQN 472


>At2g13330 F14O4.9
          Length = 889

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 48/172 (27%), Positives = 84/172 (47%), Gaps = 8/172 (4%)

Query: 2   LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
           L I+  +    ++ ++VD G++V++L      + G  DS L+     LT + G +  S+G
Sbjct: 65  LVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQGRKTPLTGFAGDTTFSIG 124

Query: 62  AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLV-- 119
            I+L  +    +++T F+VV  KA FN +LGR W+H + AVPST HQ I      G+   
Sbjct: 125 TIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCIKFPSYKGIAVV 184

Query: 120 -ENVEADQSYFLAEVNTITKRN-----FDKQLAHIAPVISPGPKQMASNDEI 165
             +  + +  ++     I K +      + +LA +  V S  P Q  +   +
Sbjct: 185 YGSQRSSRKCYMGSYEDIKKADPVVLMIEDELAEMKTVRSLDPSQRGTRKSL 236


>At1g20390 hypothetical protein
          Length = 1791

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 39/118 (33%), Positives = 67/118 (56%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL ++  I+   V +VL+D G++V+L+ +  L  + + D  +KP +  L  ++G    ++
Sbjct: 570 PLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTI 629

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGL 118
           G IKL + VG       F+V+   A +NV+LG  WIH + A+PST HQ +     +G+
Sbjct: 630 GTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNGI 687



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EA     +   +V +F+ KFII R G+P  I TD G
Sbjct: 1534 FTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNG 1574


>At4g20490 putative protein
          Length = 853

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 37/104 (35%), Positives = 64/104 (60%)

Query: 2   LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
           L I+  +    V ++L+D G++VNL+    L K+G+ +S + P    +T Y+G +  S+G
Sbjct: 481 LVIKLVMEDFDVERILIDTGSSVNLMFLKTLFKMGISESKIMPKIRPMTGYDGEAKMSIG 540

Query: 62  AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPST 105
            IKL++ VG   + T F+V+ S+  +N +LG  WI+ + A+PST
Sbjct: 541 EIKLQVQVGGITQKTKFVVIDSEPIYNAILGSPWIYSMKAIPST 584


>At4g03800
          Length = 637

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 15/124 (12%)

Query: 2   LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
           L I   +    ++++LVD G++V+L+   FLG          P + ++  +   S  SLG
Sbjct: 203 LIITLDVANFKISRILVDTGSSVDLI---FLG----------PPSPLVA-FTSESAMSLG 248

Query: 62  AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVEN 121
            IKL ++ G   +I  F+V    A +N++LG  WI  + AVPST HQ +     +G VE 
Sbjct: 249 TIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMKAVPSTYHQWLKFPTSNG-VET 307

Query: 122 VEAD 125
           +  D
Sbjct: 308 IWGD 311


>At1g34080 putative protein
          Length = 811

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 32/107 (29%), Positives = 56/107 (51%)

Query: 2   LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
           L I   +    V ++L+D G++V+L+    L ++G+   D+K     L ++   +  SLG
Sbjct: 477 LVISLDVGNCEVQRILIDTGSSVDLIFLDTLVRMGISKKDIKGAPSPLVSFTIETSMSLG 536

Query: 62  AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQ 108
            I L +      ++  F V    A +N++LG  W++ + AVPST HQ
Sbjct: 537 TITLPVTAQGVVKMIEFTVFDRPAAYNIILGTPWLYEMKAVPSTYHQ 583


>At1g37200 hypothetical protein
          Length = 1564

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 34/108 (31%), Positives = 49/108 (44%), Gaps = 11/108 (10%)

Query: 62  AIKLELMVGSTKRITTFMVVPS---KANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGL 118
           AI + + VG+ K     +   S   KA FN +LGR W+H + AVPST HQ I    E G+
Sbjct: 504 AIVIRIDVGNYKLSRIMIDTGSSVDKAPFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGI 563

Query: 119 VENVEADQ--------SYFLAEVNTITKRNFDKQLAHIAPVISPGPKQ 158
                + +        SY L +   +     + +LA +  V S  P Q
Sbjct: 564 AVIYGSQRSSRRCYMGSYELIKKAELVVLMIEDKLAEMKTVRSSDPSQ 611



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 19/40 (47%), Positives = 26/40 (64%)

Query: 1155 TKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            TKWIE    + VT+++V  F+ + I+YR GIP  I TD G
Sbjct: 1396 TKWIEGKAFQQVTEKQVEVFLLENIVYRHGIPYEIVTDNG 1435


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 59  SLGAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQ 108
           SLG + L +      ++  F V    A +NV+LG  W++ +  VPST HQ
Sbjct: 352 SLGTVVLPVTAQGVVKMVEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQ 401



 Score = 34.7 bits (78), Expect = 0.34
 Identities = 17/40 (42%), Positives = 24/40 (59%)

Query: 1155 TKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            T+ +EA    ++T  +V +FI K II R G+P  I TD G
Sbjct: 1073 TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNG 1112


>At3g31530 hypothetical protein
          Length = 831

 Score = 38.9 bits (89), Expect = 0.018
 Identities = 18/41 (43%), Positives = 24/41 (57%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            F+KWIEA     +   +V +F+ K I+ R GIP  I TD G
Sbjct: 688  FSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEIVTDNG 728



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 18/83 (21%), Positives = 38/83 (45%)

Query: 59  SLGAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGL 118
           +LG IKL +      +I  F +      +N ++G  W++   AV ST H  +     D +
Sbjct: 2   TLGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKFPTSDSV 61

Query: 119 VENVEADQSYFLAEVNTITKRNF 141
            E +  +++  +   N + + ++
Sbjct: 62  WEKLGHERAEAVKAENQLLETSY 84


>At1g36830 hypothetical protein
          Length = 243

 Score = 38.9 bits (89), Expect = 0.018
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 1155 TKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            TKWIEA   + VT+++V  F+ + I+ + GIP  I TD G
Sbjct: 27   TKWIEAKAFQQVTEKQVEDFLWENIVCQHGIPYEIITDNG 66


>At2g11940 putative retroelement gag/pol polyprotein
          Length = 1212

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 19/42 (45%), Positives = 24/42 (56%)

Query: 1153 LFTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            L  +W+EA     +TQ +V  FI K II R G+P  I TD G
Sbjct: 1009 LLLEWVEAAAYSYITQVQVRHFIWKEIICRHGLPYEIVTDNG 1050


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score = 37.4 bits (85), Expect = 0.052
 Identities = 18/41 (43%), Positives = 23/41 (55%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW EA     +  +EV +F+ K II   G+P  I TD G
Sbjct: 1530 FTKWFEAESYARIQSKEVQNFVWKNIICHHGLPYEIVTDNG 1570


>At4g08050
          Length = 1428

 Score = 36.6 bits (83), Expect = 0.088
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 17  LVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLGAIK-LELMVGSTKRI 75
           L D GA+VNL+P S   ++       KP ++ L   + SS    G +K L +M+   +  
Sbjct: 592 LCDLGASVNLMPLSMARRLEFI--QYKPCDLTLILADRSSRKHFGMLKDLPVMINGVEVP 649

Query: 76  TTFMVVPSKANFN--VLLGREWIHGVGAVPSTVHQRIAI 112
           T F+V+  +      ++LGR ++  VGAV      +I +
Sbjct: 650 TDFVVLDMEVEHKDPLILGRPFLASVGAVIDVKEGKIGL 688


>At4g07780 putative athila transposon protein
          Length = 446

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 33/115 (28%), Positives = 58/115 (49%), Gaps = 17/115 (14%)

Query: 3   FIQAKINGVG------------VNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILT 50
           FIQ K++  G             N+ L D GA+V+L+P S   ++G+   + K  N+ L 
Sbjct: 276 FIQEKLDDPGSFTLPCSLGPLTFNRCLCDLGASVSLMPLSTAKRLGIV--EYKFCNLALL 333

Query: 51  NYEGSSGNSLGAI-KLELMVGSTKRITTFMVVPS--KANFNVLLGREWIHGVGAV 102
             +GS  +  G I  L + +G+ +  T F+V+ +  +    ++LGR ++   GAV
Sbjct: 334 LPDGSVAHPHGLIGNLPVKIGNDEIPTDFVVLDTDEEGKDPLILGRPFLASAGAV 388


>At2g10670 pseudogene
          Length = 929

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 14  NKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLGAIK-LELMVGST 72
           N  L D GA+V+L+P S + K+G      KP ++ L   + +S    G ++ + +M+   
Sbjct: 589 NNCLCDLGASVSLMPLSVVKKLGFV--HYKPCDLTLILADRTSKTPFGLLEDVPVMINGV 646

Query: 73  KRITTFMV--VPSKANFNVLLGREWIHGVGAV 102
           +  T F+V  +  ++   ++LGR ++  VGAV
Sbjct: 647 EVPTDFVVLEMDGESKDPLILGRPFLASVGAV 678


>At1g37070 hypothetical protein
          Length = 590

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 29/92 (31%), Positives = 50/92 (53%), Gaps = 5/92 (5%)

Query: 14  NKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLGAIK-LELMVGST 72
           N+ L D GA+V+L+P S   ++G+   + K  N+ L   +GS  +  G I+ L + + + 
Sbjct: 272 NRCLCDLGASVSLMPLSTAKRLGI--MEYKFCNLALLLADGSVAHPHGLIENLPVKIENV 329

Query: 73  KRITTFMV--VPSKANFNVLLGREWIHGVGAV 102
           +  T F+V  V  K    ++LGR ++   GAV
Sbjct: 330 EIPTDFVVLDVDEKGKDPLILGRPFLASAGAV 361


>At2g10660 putative Athila retroelement ORF1 protein
          Length = 1303

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 17  LVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLGAIK-LELMVGSTKRI 75
           L D GA+V+L+P S   K+    +  +P ++ L   + SS    G +K L LM+   +  
Sbjct: 449 LCDLGASVSLMPLSVARKLEF--TQYRPCDLSLILADRSSRKPFGLLKHLPLMINGVEVP 506

Query: 76  TTFMVVPSKANFN--VLLGREWIHGVGAVPSTVHQRIAI 112
           T F+V+  +      ++LGR ++  VGA+      RI++
Sbjct: 507 TDFVVLGMEVEPKDPLILGRPFLASVGAMIDVKDGRISL 545


>At1g36560 hypothetical protein
          Length = 524

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 26/102 (25%), Positives = 51/102 (49%), Gaps = 5/102 (4%)

Query: 4   IQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLGAI 63
           +   +  +  NK L D GA+V+L+P S   ++G   +  K  N+ L   +GS     G +
Sbjct: 127 LPCSLGSLTFNKCLCDLGASVSLMPLSVAKRLGF--NKYKYCNISLILADGSVRQPHGVL 184

Query: 64  K-LELMVGSTKRITTFMV--VPSKANFNVLLGREWIHGVGAV 102
           + L + +G  +  T F++  +  +    ++LGR ++   GA+
Sbjct: 185 EDLPIKIGKVEVPTDFIILNMDEEPKDPLILGRPFLATAGAI 226


>At4g03790 putative athila-like protein
          Length = 1064

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 28/102 (27%), Positives = 50/102 (48%), Gaps = 5/102 (4%)

Query: 4   IQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLGAI 63
           +   I  +  +  L D GA+V+L+P S   ++       KP ++ L   + SS    G +
Sbjct: 416 LPCSIGELAFSDFLCDLGASVSLMPLSMGRRLEFI--HYKPCDLTLILADRSSRKPFGML 473

Query: 64  K-LELMVGSTKRITTFMVVPSKANFN--VLLGREWIHGVGAV 102
           K L +M+   +  T F+V+  +      ++LGR ++  VGAV
Sbjct: 474 KDLPVMINGVEVPTDFVVLNMEVKHKDPLILGRPFLASVGAV 515


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.348    0.153    0.528 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,115,697
Number of Sequences: 26719
Number of extensions: 959487
Number of successful extensions: 3289
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3252
Number of HSP's gapped (non-prelim): 50
length of query: 1194
length of database: 11,318,596
effective HSP length: 110
effective length of query: 1084
effective length of database: 8,379,506
effective search space: 9083384504
effective search space used: 9083384504
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 66 (30.0 bits)


Medicago: description of AC140773.4