BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140721.3 + phase: 0 /pseudo
         (1439 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g44860 unknown protein                                              32  2.0
At3g07330 unknown protein                                              31  5.9
At3g28180 unknown protein                                              30  7.7

>At5g44860 unknown protein
          Length = 321

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 6/65 (9%)

Query: 809 LFMKTISLTLILHPLLLLIGN-IFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLL 867
           L +K + +T +   L++L+ N +FL+F     L++L + ++LQS+++ +  +  +++L L
Sbjct: 124 LVLKRLFITFLWVSLMMLVYNSVFLLF-----LVVLIVAIDLQSVILAVFSMVVIFVLFL 178

Query: 868 LLHLF 872
            +H++
Sbjct: 179 GVHVY 183


>At3g07330 unknown protein
          Length = 682

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 738 NHLTSFFIINSLILPFSKFLVVYVMLPLYILIEPNCNL 775
           N +  FF++  LILPF  F +  V+LPL +   P  NL
Sbjct: 480 NMIFLFFLLRKLILPFYSFTLFCVILPLTMFF-PEANL 516


>At3g28180 unknown protein
          Length = 673

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 738 NHLTSFFIINSLILPFSKFLVVYVMLPLYILIEPNCNLEL 777
           N +  FF++  LILPF  F +  ++LPL + I P   L L
Sbjct: 458 NLIFLFFLLRKLILPFYSFTLFCIILPLTMFI-PEAELPL 496


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.356    0.163    0.531 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,880,905
Number of Sequences: 26719
Number of extensions: 963331
Number of successful extensions: 4828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4824
Number of HSP's gapped (non-prelim): 7
length of query: 1439
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1327
effective length of database: 8,326,068
effective search space: 11048692236
effective search space used: 11048692236
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 67 (30.4 bits)