BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140671.6 + phase: 0 /pseudo
(999 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15590 reverse transcriptase like protein 237 2e-62
At2g31080 putative non-LTR retroelement reverse transcriptase 226 5e-59
At4g08830 putative protein 204 3e-52
At3g32110 non-LTR reverse transcriptase, putative 203 3e-52
At2g45230 putative non-LTR retroelement reverse transcriptase 174 3e-43
At2g01840 putative non-LTR retroelement reverse transcriptase 171 1e-42
At2g31520 putative non-LTR retroelement reverse transcriptase 169 6e-42
At2g25550 putative non-LTR retroelement reverse transcriptase 169 6e-42
At4g10830 putative protein 166 5e-41
At1g47910 reverse transcriptase, putative 166 8e-41
At4g09710 RNA-directed DNA polymerase -like protein 162 9e-40
At3g31420 hypothetical protein 161 2e-39
At4g04000 putative reverse transcriptase 160 3e-39
At1g24640 hypothetical protein 159 6e-39
At2g17910 putative non-LTR retroelement reverse transcriptase 153 4e-37
At2g41580 putative non-LTR retroelement reverse transcriptase 145 1e-34
At2g07650 putative non-LTR retrolelement reverse transcriptase 140 3e-33
At1g25430 hypothetical protein 140 5e-33
At2g05200 putative non-LTR retroelement reverse transcriptase 139 1e-32
At2g11240 pseudogene 132 7e-31
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 237 bits (605), Expect = 2e-62
Identities = 124/323 (38%), Positives = 195/323 (59%), Gaps = 1/323 (0%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
LK+WN + FGNI RK ++++ L +Q+ ++ L E L ++ + L+QEE LW
Sbjct: 92 LKKWNKEVFGNIHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLW 151
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
FQKSR K +A GDRNT ++H+ T+IRRR+N+I L D W+ + L+ L ++Y L
Sbjct: 152 FQKSREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKL 211
Query: 121 FK-EDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIF 179
+ ED + +P + + N L +E A+ MG KA G DGY +F
Sbjct: 212 YSLEDVSVVRGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVF 271
Query: 180 FQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYK 239
+Q CW+ V +S+ FV + + + L N++L+V++ K+ KPE ++QFRP+SLCNV++K
Sbjct: 272 YQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFK 331
Query: 240 IISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDFMSIKID 299
II+K++V R+K ++ ++I P Q+SFIPGR NI+V QE VH+M + KG+K +M +K+D
Sbjct: 332 IITKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLD 391
Query: 300 L*KSL*SS*LEFCGEMLRGV*VS 322
L K+ +F E L +S
Sbjct: 392 LEKAYDRIRWDFLAETLEAAGLS 414
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 226 bits (576), Expect = 5e-59
Identities = 119/304 (39%), Positives = 187/304 (61%), Gaps = 1/304 (0%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L++WN + FG+I RK +L+A + +Q+ S+ L E+ L +++ + L QEE LW
Sbjct: 140 LRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLW 199
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
FQKSR K+I GDRNT ++H+ TIIRRR+N+I +L D W+ D L+ + +Y L
Sbjct: 200 FQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRL 259
Query: 121 FK-EDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIF 179
+ ED +++ + ++ L+ E A+ MG KA G DGY +F
Sbjct: 260 YSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVF 319
Query: 180 FQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYK 239
+Q CW+ V S+ FV + + L + N+ L+V+I K+ KPE + QFRP+SLCNV++K
Sbjct: 320 YQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFK 379
Query: 240 IISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDFMSIKID 299
II+K++V R+K ++ ++I P Q+SFIPGR NI++ QE VH+M + KG+K +M +K+D
Sbjct: 380 IITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLD 439
Query: 300 L*KS 303
L K+
Sbjct: 440 LEKA 443
>At4g08830 putative protein
Length = 947
Score = 204 bits (518), Expect = 3e-52
Identities = 114/305 (37%), Positives = 177/305 (57%), Gaps = 23/305 (7%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
LK+WN FG++ ++K EL+ + +Q++ + S+ + E++L +
Sbjct: 46 LKKWNRDVFGDVKKKKEELMREIQVVQDALDVHQSDDMLRKEEDLIKA------------ 93
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
F KSR KWIA GDRNT Y+H+ TIIRRR+N++ L ++ WI D L+ L +Y L
Sbjct: 94 FDKSREKWIALGDRNTNYFHTTTIIRRRQNRVERLHNEEGTWIFDAKELEALAVQYYQRL 153
Query: 121 FKED------TPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDG 174
+ D P + T V+ L + V++ A+ MG +KA G DG
Sbjct: 154 YSMDDVLQVVNPLPQDGLERLTREEVLSLNKPFLATEVEV-----AIRSMGKYKAPGPDG 208
Query: 175 YPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLC 234
Y IF+Q CW+ V +S+ F + + L N+ L+V+IPK+ KPE ++QFRPISLC
Sbjct: 209 YQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRPISLC 268
Query: 235 NVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDFM 294
N I+K+I+K++V R+K ++ ++I P QSSFIPGR NI+V QE VH++++ KG+K+ +
Sbjct: 269 NAIFKMITKMMVLRLKKVIGKLIGPSQSSFIPGRLSLDNIVVVQEAVHSLNRKKGRKERL 328
Query: 295 SIKID 299
ID
Sbjct: 329 CHMID 333
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 203 bits (517), Expect = 3e-52
Identities = 108/272 (39%), Positives = 165/272 (59%), Gaps = 5/272 (1%)
Query: 35 SNFLENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILT 94
S+ L E+EL + + L QEE +W QKSR KW GDRNTK++H+ TIIRRR+N+I
Sbjct: 850 SDDLLKKEEELLKDFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIEM 909
Query: 95 LCDDSSDWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYH---NKLISN 151
L D+ W+ + L+ ++Y L+ D D++V + L
Sbjct: 910 LQDNDGRWLSNAQELETHAIDYYKRLYSLD--DLDAVVEQLPQEGFTALSEADFSSLTKP 967
Query: 152 VQLNECKRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNI 211
E + A+ MG +KA G DG+ +F+Q W+ V +S+ FV + + S N++
Sbjct: 968 FSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSFPQETNDV 1027
Query: 212 LIVMIPKIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIH 271
L+V+I K+ KPE ++QFRPISLCNV++K I+KV+V R+K +++++I P Q+SFIPGR
Sbjct: 1028 LVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSFIPGRLST 1087
Query: 272 HNIIVAQEMVHAMSKMKGKKDFMSIKIDL*KS 303
NI+V QE+VH+M + KG K +M +K+DL K+
Sbjct: 1088 DNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKA 1119
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 174 bits (440), Expect = 3e-43
Identities = 100/284 (35%), Positives = 159/284 (55%), Gaps = 7/284 (2%)
Query: 38 LENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCD 97
L L+KEL ++ EE W +KSR W+ +GDRNTKY+H+ T RR +N+I L D
Sbjct: 318 LARLKKELSQEYN----NEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLID 373
Query: 98 DSS-DWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNE 156
+ +W D + L + ++ LF + P V + +N L++ + E
Sbjct: 374 EEGREWTSDED-LGRVAEAYFKKLFASEDVGYTVEELENLTPLVSDQMNNNLLAPITKEE 432
Query: 157 CKRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMI 216
+RA F + PHK G DG +Q W+ + D + V+ + + S+ +N I +I
Sbjct: 433 VQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLI 492
Query: 217 PKIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIV 276
PKI K E ++ FRPISLCNVIYK+I K++ NR+K +L +IS Q++F+ GR I NI++
Sbjct: 493 PKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILI 552
Query: 277 AQEMVHAM-SKMKGKKDFMSIKIDL*KSL*SS*LEFCGEMLRGV 319
A E++HA+ S K ++F++IK D+ K+ F + +RG+
Sbjct: 553 AHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGL 596
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 171 bits (434), Expect = 1e-42
Identities = 93/305 (30%), Positives = 168/305 (54%), Gaps = 8/305 (2%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L +W +T N + L R++ + H + L L + L EE W
Sbjct: 644 LAKWKRRTKTNTAEKIETLKYRVDAAERDHTLPHQTILR-----LRQDLNQAYRDEELYW 698
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
KSR++W+ GDRNT ++++ T +R+ +N+I + D + + + N++ DL
Sbjct: 699 HLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADL 758
Query: 121 FKE-DTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIF 179
F T + I+S P V + +++L+ +V E + A+F +G +A G DG+ A F
Sbjct: 759 FTTTQTSDWEEIISGIA-PKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAF 817
Query: 180 FQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYK 239
+ H WD + + + V+ + + + + IN I +IPKI P+ +S +RPISLC YK
Sbjct: 818 YHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYK 877
Query: 240 IISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAM-SKMKGKKDFMSIKI 298
IISK+++ R+K L +IS Q++F+PG+NI N++VA E++H++ S+ + + ++++K
Sbjct: 878 IISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKT 937
Query: 299 DL*KS 303
D+ K+
Sbjct: 938 DISKA 942
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 169 bits (429), Expect = 6e-42
Identities = 94/264 (35%), Positives = 154/264 (57%), Gaps = 7/264 (2%)
Query: 44 ELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWI 103
+L E LA EE W QKSR++W+ +GD+NT Y+H+ T R +N++ T+ DD
Sbjct: 476 QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 535
Query: 104 DDPNILKNLVRNFYTDLFKED---TPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRA 160
+ N ++F+T++F + D +T N V K S+ ++ + A
Sbjct: 536 TGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYD---A 592
Query: 161 LFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIE 220
+ +G KA G DG A F+++CWD V + VK+ + + IN+ I MIPKI
Sbjct: 593 ICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKIT 652
Query: 221 KPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEM 280
P +S +RPI+LCNV+YK+ISK +VNR+K L+ I+S Q++FIPGR I+ N+++A E+
Sbjct: 653 NPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEV 712
Query: 281 VHAMS-KMKGKKDFMSIKIDL*KS 303
+H++ + + K +M++K D+ K+
Sbjct: 713 MHSLKVRKRVSKTYMAVKTDVSKA 736
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 169 bits (429), Expect = 6e-42
Identities = 94/264 (35%), Positives = 154/264 (57%), Gaps = 7/264 (2%)
Query: 44 ELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWI 103
+L E LA EE W QKSR++W+ +GD+NT Y+H+ T R +N++ T+ DD
Sbjct: 702 QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 761
Query: 104 DDPNILKNLVRNFYTDLFKED---TPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRA 160
+ N ++F+T++F + D +T N V K S+ ++ + A
Sbjct: 762 TGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYD---A 818
Query: 161 LFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIE 220
+ +G KA G DG A F+++CWD V + VK+ + + IN+ I MIPKI
Sbjct: 819 ICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKIT 878
Query: 221 KPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEM 280
P +S +RPI+LCNV+YK+ISK +VNR+K L+ I+S Q++FIPGR I+ N+++A E+
Sbjct: 879 NPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEV 938
Query: 281 VHAMS-KMKGKKDFMSIKIDL*KS 303
+H++ + + K +M++K D+ K+
Sbjct: 939 MHSLKVRKRVSKTYMAVKTDVSKA 962
>At4g10830 putative protein
Length = 1294
Score = 166 bits (421), Expect = 5e-41
Identities = 97/291 (33%), Positives = 167/291 (57%), Gaps = 7/291 (2%)
Query: 15 RKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDR 74
R N+L A L+ +S N + ++++EL + EE W QKSR++W+ +GDR
Sbjct: 657 RINQLQAALDKAMSSVNRTERRTISHIQREL----TVAYRDEERYWQQKSRNQWMKEGDR 712
Query: 75 NTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSW 134
NT+++H+ T R N+++T+ D+ + + F+T ++ E SI+ +
Sbjct: 713 NTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY-ESNGRPVSIIDF 771
Query: 135 TTY-PNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFN 193
+ P V + ++ L ++ E A+ +G KA G DG A F++ CW+ V +
Sbjct: 772 AGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIK 831
Query: 194 FVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLL 253
VK + + IN+ I MIPKI PE +S +RPI+LCNV+YKIISK +V R+K L
Sbjct: 832 EVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHL 891
Query: 254 DRIISPYQSSFIPGRNIHHNIIVAQEMVHAM-SKMKGKKDFMSIKIDL*KS 303
D I+S Q++FIPGR ++ N+++A EM+H++ ++ + + +M++K D+ K+
Sbjct: 892 DAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 942
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 166 bits (419), Expect = 8e-41
Identities = 93/261 (35%), Positives = 144/261 (54%), Gaps = 1/261 (0%)
Query: 44 ELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWI 103
EL +L EE W+QKSRS W+ GD N+K++H+ T RR +N+I L D++ W
Sbjct: 104 ELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWS 163
Query: 104 DDPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFD 163
+ + ++N+ +++ +LF P + + ++ L ++ E + ALF
Sbjct: 164 IEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFM 223
Query: 164 MGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPE 223
+ P KA G DG A+FFQ W + L + V +N I +IPK E+P
Sbjct: 224 IHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPT 283
Query: 224 FVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHA 283
+++ RPISLCNV YK+ISK++ R+K +L +IS QS+F+ GR I NI++AQEM H
Sbjct: 284 RMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHG 343
Query: 284 MSKMKGKKD-FMSIKIDL*KS 303
+ KD FM+IK D+ K+
Sbjct: 344 LRTNSSCKDKFMAIKTDMSKA 364
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 162 bits (410), Expect = 9e-40
Identities = 86/259 (33%), Positives = 142/259 (54%), Gaps = 3/259 (1%)
Query: 47 EQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDP 106
++L QEE W Q SR +W+ GDRN Y+H+ T RR N + + D S +
Sbjct: 264 QELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEE 323
Query: 107 NILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGP 166
+ + + +++ ++F S +V P + + +LI L E K ALF +
Sbjct: 324 EQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISA 383
Query: 167 HKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVS 226
KA G DG+ A FF WD + + ++ +V+ L +N + +IPKI P VS
Sbjct: 384 DKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVS 443
Query: 227 QFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSK 286
+RPI+LCNV YKI++K++ R++P L +IS +QS+F+PGR I N+++ E++H + +
Sbjct: 444 DYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFL-R 502
Query: 287 MKGKKDF--MSIKIDL*KS 303
+ G K + M+IK D+ K+
Sbjct: 503 VSGAKKYCSMAIKTDMSKA 521
>At3g31420 hypothetical protein
Length = 1491
Score = 161 bits (408), Expect = 2e-39
Identities = 94/279 (33%), Positives = 156/279 (55%), Gaps = 5/279 (1%)
Query: 43 KELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDW 102
+++ + L EE W KSRS+W+ GDRNT+Y+HS T RR +N++L++ D D
Sbjct: 502 RQMRQDLNQAYADEEIYWQTKSRSRWLNAGDRNTRYFHSTTKTRRCRNRLLSVQDSDGDI 561
Query: 103 I-DDPNILKNLVRNFYTDLFKE--DTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKR 159
D NI K + N++ DL+K +T R + V + + + LI V E +
Sbjct: 562 CRGDENIAKVAI-NYFDDLYKSTPNTSLRYADVFQGFQQKITDEINEDLIRPVTELEIEE 620
Query: 160 ALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKI 219
++F + P + DG+ A F+Q W + + + V + + L N+ + +IPK+
Sbjct: 621 SVFSVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEVTRFFERSELDERHNHTNLCLIPKV 680
Query: 220 EKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQE 279
E P +++FRPI+LCNV YKIISK++VNR+K L I+ Q++F+PGR I +N I+A E
Sbjct: 681 ETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITENQAAFVPGRLITNNAIIAHE 740
Query: 280 MVHAMSKMKGK-KDFMSIKIDL*KSL*SS*LEFCGEMLR 317
+ +A+ K + +M++K D+ K+ +F E +R
Sbjct: 741 VYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMR 779
>At4g04000 putative reverse transcriptase
Length = 1077
Score = 160 bits (406), Expect = 3e-39
Identities = 84/260 (32%), Positives = 149/260 (57%), Gaps = 1/260 (0%)
Query: 45 LHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWID 104
L++ L + +EE W Q+SR+ W+A GD+N+ ++H+ T RR N I + + + +
Sbjct: 297 LNQNLLLAYRKEETFWKQRSRNLWLALGDKNSCFFHAATNSRRAINTISVIENSAGTSVY 356
Query: 105 DPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDM 164
+ + + + +++ D+F R S+V+ P + +N LIS + E K+A +
Sbjct: 357 EDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDMNNTLISLPTVAEIKQACLSI 416
Query: 165 GPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEF 224
P KA G DG+ A FFQ W V++ + V+ +++ L IN+ + +IPKI P+
Sbjct: 417 HPDKAPGRDGFSASFFQSNWSTVSEEITAEVQAFFISEILPQKINHTHVRLIPKIPAPQK 476
Query: 225 VSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAM 284
VS +RPI+LC+V YKII+K++ R++P+L IS QS+F+P R I N+++ E +H +
Sbjct: 477 VSDYRPIALCSVYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNVLITHEALHYL 536
Query: 285 SKMKGKKD-FMSIKIDL*KS 303
+ +M++K D+ K+
Sbjct: 537 KNSGALVNCYMAVKTDMSKA 556
>At1g24640 hypothetical protein
Length = 1270
Score = 159 bits (403), Expect = 6e-39
Identities = 90/262 (34%), Positives = 143/262 (54%), Gaps = 5/262 (1%)
Query: 45 LHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWID 104
L + LA +EE W QKSR KW+ G+RN+KY+H+ R++ +I L D + +
Sbjct: 284 LKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQT 343
Query: 105 DPNILKNLVRNFYTDLFKEDTPSRDSIVSWTT--YPNVVGKYHNKLISNVQLNECKRALF 162
+ ++ +LFK PS W + P V + L+ V E K A+F
Sbjct: 344 SEAAKGEVAAAYFGNLFKSSNPS--GFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVF 401
Query: 163 DMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKP 222
+ P A G DG A+FFQH W V + + + VK+ + + + + N + +IPK + P
Sbjct: 402 SIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHP 461
Query: 223 EFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVH 282
+ RPISLC+V+YKIISK++ R++P L I+S QS+F+ R I NI+VA E+VH
Sbjct: 462 TEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVH 521
Query: 283 AMS-KMKGKKDFMSIKIDL*KS 303
++ + +FM++K D+ K+
Sbjct: 522 SLKVHPRISSEFMAVKSDMSKA 543
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 153 bits (387), Expect = 4e-37
Identities = 88/260 (33%), Positives = 139/260 (52%), Gaps = 1/260 (0%)
Query: 45 LHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWID 104
+ +QL++ EE W QKSR KW+A GD+NT ++H+ R KN++ L D++
Sbjct: 299 IKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFT 358
Query: 105 DPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDM 164
+ + +F+ +LF + V + ++ LI V E A+F +
Sbjct: 359 RNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSI 418
Query: 165 GPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEF 224
A G DG+ A+FFQ WD V + + + L N+ I +IPKI P+
Sbjct: 419 NKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQR 478
Query: 225 VSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAM 284
+S RPISLC+V+YKIISK++ R+K L I+S QS+F+P R I NI+VA EM+H++
Sbjct: 479 MSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSL 538
Query: 285 -SKMKGKKDFMSIKIDL*KS 303
+ + K+ M+ K D+ K+
Sbjct: 539 RTNDRISKEHMAFKTDMSKA 558
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 145 bits (365), Expect = 1e-34
Identities = 87/260 (33%), Positives = 133/260 (50%), Gaps = 1/260 (0%)
Query: 45 LHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWID 104
L + L +EE W KSR KW+ GD+N+K++ + R N + L D++ +
Sbjct: 50 LQDVLGDAYREEEDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQT 109
Query: 105 DPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDM 164
+ F+ DLF PS V V + L V E +A+F +
Sbjct: 110 VNREKGKIAVTFFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSI 169
Query: 165 GPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEF 224
A G DG+ A+FFQ W V + + + ++ + L N+ + +IPKI KP
Sbjct: 170 NAESAPGPDGFTALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPAR 229
Query: 225 VSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAM 284
++ RPISLC+V+YKIISK++ R+K L I+SP QS+F+ R + NII+A E+VH +
Sbjct: 230 MADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNL 289
Query: 285 -SKMKGKKDFMSIKIDL*KS 303
+ K KDFM K D+ K+
Sbjct: 290 RTNEKISKDFMVFKTDMSKA 309
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 140 bits (354), Expect = 3e-33
Identities = 69/156 (44%), Positives = 103/156 (65%)
Query: 164 MGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPE 223
MG +KA G DG+ +F+Q CWD V DS+ FV + + L N+ ++V+I K+ KPE
Sbjct: 1 MGKYKAPGPDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPE 60
Query: 224 FVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHA 283
++QFRPISLCNV++K I+K +V R+K ++ ++I P Q+SFI GR NI++ QE VH+
Sbjct: 61 RITQFRPISLCNVLFKTITKTLVMRLKRVISKLIRPAQASFISGRLAADNIVIMQEAVHS 120
Query: 284 MSKMKGKKDFMSIKIDL*KSL*SS*LEFCGEMLRGV 319
M + KG+K +M +K+DL K+ EF + LR V
Sbjct: 121 MRRKKGRKGWMLLKLDLEKAYDRIRWEFLEDTLRAV 156
>At1g25430 hypothetical protein
Length = 1213
Score = 140 bits (352), Expect = 5e-33
Identities = 94/326 (28%), Positives = 160/326 (48%), Gaps = 12/326 (3%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
+K+++ + + +R E L G Q+ + + E E + I EE +
Sbjct: 293 IKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERKWHILTAAEESFF 352
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
QKSR W A+GD NTKY+H R N I L D + +D + +L +++ L
Sbjct: 353 RQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSL 412
Query: 121 FKEDTP-------SRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGED 173
++ + ++S+ P V + L S + + ALF + +K+ G D
Sbjct: 413 LGDEVDPYLMEQNDMNLLLSYRCSPAQVCE----LESTFSNEDIRAALFSLPRNKSCGPD 468
Query: 174 GYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISL 233
G+ A FF W V + + +K+ + + L+ N IV+IPKI P S FRPIS
Sbjct: 469 GFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISC 528
Query: 234 CNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDF 293
N +YK+I++++ +R++ LL +IS QS+F+PGR++ N+++A ++VH +
Sbjct: 529 LNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRG 588
Query: 294 MSIKIDL*KSL*SS*LEFCGEMLRGV 319
M +K+DL K+ S EF LR +
Sbjct: 589 M-LKVDLKKAFDSVRWEFVIAALRAL 613
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 139 bits (349), Expect = 1e-32
Identities = 85/319 (26%), Positives = 160/319 (49%), Gaps = 20/319 (6%)
Query: 4 WNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQL-----------AIT 52
W ++ + N+ + N + +E +K L E L A+T
Sbjct: 158 WTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPPNPTTIGALT 217
Query: 53 L-----YQ-EECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDP 106
Y+ EE W Q+SR W+ GDRNT Y+H+ T RR +N++ + D + +
Sbjct: 218 ATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMEDINGVAQHEE 277
Query: 107 NILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNE-CKRALFDMG 165
+ + ++ ++ +F ++ S+V P +V + N ++ + +E K A+F +
Sbjct: 278 HQISQIISGYFQQIFTSESDGDFSVVDEAIEP-MVSQGDNDFLTRIPNDEEVKDAVFSIN 336
Query: 166 PHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFV 225
KA G DG+ A F+ W ++ + ++ + + + +N I +IPK P V
Sbjct: 337 ASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKV 396
Query: 226 SQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMS 285
+ +RPI+LCN+ YKI++K++ R++ +L ++IS QS+F+PGR I N+++ E++H +
Sbjct: 397 ADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLR 456
Query: 286 KMKGKKD-FMSIKIDL*KS 303
KK M++K D+ K+
Sbjct: 457 TSSAKKHCSMAVKTDMSKA 475
>At2g11240 pseudogene
Length = 1044
Score = 132 bits (333), Expect = 7e-31
Identities = 81/267 (30%), Positives = 142/267 (52%), Gaps = 11/267 (4%)
Query: 39 ENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTL-CD 97
+ L ++ L + EE W Q+SR W+A GD+N+ Y+H+ T R NK + +
Sbjct: 149 QELLSTINTNLLLAYKAEEEYWKQRSRQLWLALGDKNSGYFHAITRGRTVINKFSVIEKE 208
Query: 98 DSSDWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNEC 157
D ++ IL N++ ++ LF + +R + + P + + + + E
Sbjct: 209 DGVPEYEEAGIL-NVISEYFQKLFSANEGARAATIKEAIKPFISPEQNPE--------EI 259
Query: 158 KRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIP 217
K A F + KA G DG+ A FFQ W V ++ ++ + + +L IN I +IP
Sbjct: 260 KSACFSIHADKAPGPDGFSASFFQSNWMTVGPNIVLEIQSFFSSSTLQPTINKTHITLIP 319
Query: 218 KIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVA 277
KI+ + + +RPI+LC V YKIISK++ R++P+L IIS QS+F+P R + N+++
Sbjct: 320 KIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLIT 379
Query: 278 QEMVHAMSKMKG-KKDFMSIKIDL*KS 303
E +H + + K+ FM++K ++ K+
Sbjct: 380 HEALHYLKSLGAEKRCFMAVKTNMSKA 406
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.360 0.161 0.604
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,323,808
Number of Sequences: 26719
Number of extensions: 721854
Number of successful extensions: 3423
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3313
Number of HSP's gapped (non-prelim): 71
length of query: 999
length of database: 11,318,596
effective HSP length: 109
effective length of query: 890
effective length of database: 8,406,225
effective search space: 7481540250
effective search space used: 7481540250
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC140671.6