BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140550.8 + phase: 0 /pseudo
(496 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52280 putative protein 75 8e-14
At2g34900 RING3 protein-like 68 1e-11
At5g63330 unknown protein 67 2e-11
At1g20670 hypothetical protein 62 6e-10
At5g46550 unknown protein 62 7e-10
At5g65630 unknown protein 61 1e-09
At1g06230 Ring3-like bromodomain protein 59 8e-09
At5g10550 bromodomain protein - like 57 2e-08
At1g17790 unknown protein (At1g17790) 57 2e-08
At3g01770 unknown protein 54 2e-07
At1g76380 unknown protein 54 3e-07
At1g73150 unknown protein 53 3e-07
At5g55040 putative protein 52 8e-07
At5g14270 kinase - like protein 51 1e-06
At3g47270 putative protein 51 2e-06
At1g20290 hypothetical protein 51 2e-06
At3g54610 histone acetyltransferase (HAT1) 50 2e-06
At3g27255 unknown protein 46 4e-05
At2g02200 putative protein on transposon FARE2.10 (cds2) 46 4e-05
At1g05910 unknown protein 45 9e-05
>At3g52280 putative protein
Length = 369
Score = 75.1 bits (183), Expect = 8e-14
Identities = 36/96 (37%), Positives = 56/96 (57%), Gaps = 2/96 (2%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKND--KYMNSEDVY 259
I R++ + A PF PVN E LG+ DYF++ID PMDF TI + +E D Y + +Y
Sbjct: 101 IFRQITQHKCAWPFMHPVNVEGLGLHDYFEVIDKPMDFSTIKNQMEAKDGTGYKHVMQIY 160
Query: 260 NDVRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYWA 295
D+R ++EN YN + + + K++ + F + WA
Sbjct: 161 ADMRLVFENAMNYNEETSDVYSMAKKLLEKFEEKWA 196
>At2g34900 RING3 protein-like
Length = 386
Score = 68.2 bits (165), Expect = 1e-11
Identities = 77/353 (21%), Positives = 143/353 (39%), Gaps = 35/353 (9%)
Query: 119 LERHGVNADRIEDSVTS----------FPDLKYGASYKKAGSIKIKSSKVLGLNADQTSK 168
LE G D I D V F K GA+ K + ++ SK
Sbjct: 33 LENFGTCVDEITDRVNQLEQKVVEVEHFYSTKDGAAQTNTSKSN-SGGKKIAISQPNNSK 91
Query: 169 PLPISSEIIHPKERKMPPLNPRYNKHELDTSLMIIRKVMKMDAAEPFNVPVNPEALGIPD 228
E K P L ++ + R++ + A PF PV+ + LG+ D
Sbjct: 92 GNSAGKEKSKGKHVSSPDLMRQF--------ATMFRQIAQHKWAWPFLEPVDVKGLGLHD 143
Query: 229 YFDIIDTPMDFGTICSNLEKNDKYMNSEDVYNDVRYIWENCYKYNNKGDYIVDLMKRVKK 288
Y+ +I+ PMD GTI +E ++ Y N ++Y DVR +++N +YN + + + + + + +
Sbjct: 144 YYKVIEKPMDLGTIKKKMESSE-YSNVREIYADVRLVFKNAMRYNEEKEDVYVMAESLLE 202
Query: 289 NFMKYW-AAAGLYSEQPKGSTDFKQE----ESMLVESPGGEDSLSNTDELLGTDGDVDDD 343
F + W E+ K D + E + + +E+ E + ++EL D ++
Sbjct: 203 KFEEKWLLIMPKLVEEEKKQVDEEAEKHANKQLTMEAAQAEMARDLSNELYEIDLQLEKL 262
Query: 344 KGEVT----KMETSE-KNCSPSDGRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEE 398
+ V K+ T E K S + GR ++ P E + + + +
Sbjct: 263 RESVVQRCRKLSTQEKKGLSAALGRLSPEDLSKALKMVSESNPSFPAGAPEVELDIDVQT 322
Query: 399 EIEMNRVKRRMDETLR-----HGGTLAEESEVGDTAALHDEYKNTQQEGQAAV 446
++ + R+K + E L+ GGT A+ + T ++ ++E A+
Sbjct: 323 DVTLWRLKVFVQEALKAANKSSGGTNAQNNNNTGTGEINKNNAKRRREISDAI 375
>At5g63330 unknown protein
Length = 477
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/245 (25%), Positives = 98/245 (39%), Gaps = 26/245 (10%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYND 261
++ ++ + PF PV+P L IPDYF++I PMD GTI S L K + Y + D D
Sbjct: 168 LLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGE-YSSPLDFAAD 226
Query: 262 VRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYWAAAGLYSEQPKGSTDFKQEESMLVESP 321
VR + N YN G+ + + + K F W + K + L
Sbjct: 227 VRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKKIPMSKPPVIPLTSSASLESEI 286
Query: 322 GGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENHGP 381
E + E D K+ +DG E ++ D M E P
Sbjct: 287 PFEVAPMRKKEAAMND----------NKLRVEPAKLVMTDG--EKKKLGQDLMALEEDFP 334
Query: 382 EDVEE-------DEEEDGEGENEEEIE------MNRVKRRMDETLRHGGTLAEESEVGDT 428
+ + + + + GEGE E +IE + V++ +D+ LR E+SE +
Sbjct: 335 QKIADLLREQSGSDGQSGEGEIEIDIEALSDEILFMVRKLLDDYLREKKKSMEKSEPCEM 394
Query: 429 AALHD 433
+HD
Sbjct: 395 EIVHD 399
>At1g20670 hypothetical protein
Length = 652
Score = 62.4 bits (150), Expect = 6e-10
Identities = 53/185 (28%), Positives = 88/185 (46%), Gaps = 16/185 (8%)
Query: 98 PNSSDAPS--------QSDTDKSSQQQHGLERHGVNADRIEDSVTSFPDLKYGASYKKAG 149
PNS+D S +D D+ +++H L HG+N+ S S DL + + +
Sbjct: 76 PNSNDGDSPWIKDEGEDNDDDERREKKHKL-LHGLNSHSHRHSPNSQSDLNLDQTPEPSF 134
Query: 150 SIKIKSSKVLGLNADQTSKPLPISSEIIHPKERKMPPLNPRYNKHELDTSLMIIRKVMKM 209
+ + S+ G + T + +++I+ + P P +K L L I+ ++ K
Sbjct: 135 NRRNLSAAASGSDY-HTGEKASKATDILQGSPVESGPTTPLPDKKLL---LFILDRLQKK 190
Query: 210 DAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYNDVRYIWENC 269
D ++ PV+PE L PDYF+II PMDF T+ + L+ + Y E DV I N
Sbjct: 191 DTYGVYSDPVDPEEL--PDYFEIIKNPMDFSTLRNKLD-SGAYSTLEQFERDVFLICTNA 247
Query: 270 YKYNN 274
+YN+
Sbjct: 248 MEYNS 252
>At5g46550 unknown protein
Length = 494
Score = 62.0 bits (149), Expect = 7e-10
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 139 LKYG--ASYKKAGSIKIKSSKVLGLNADQTSKPLPISSEIIHPKERKMPPLNPRYNKHEL 196
+K+G S + ++ S K+ + + S+ S + PKE + + P+ K L
Sbjct: 9 IKFGPQGSVRTFQTLSDSSKKIEHVVTEDLSQSSEKSKKRGGPKE--LDEVQPK-KKQRL 65
Query: 197 DTS-----LMIIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDK 251
D L ++R +M+ F PV+P + IPDYF++I PMD GT+ S L KN
Sbjct: 66 DCDWSSQCLALLRFLMEHRGGWLFKEPVDPVKMEIPDYFNVIQKPMDLGTVKSKLLKN-V 124
Query: 252 YMNSEDVYNDVRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYW 294
Y N+++ DVR + N YN + + + K + + F W
Sbjct: 125 YSNADEFAADVRLTFANAMHYNPLWNEVHTIAKEINEIFEVRW 167
>At5g65630 unknown protein
Length = 590
Score = 61.2 bits (147), Expect = 1e-09
Identities = 34/95 (35%), Positives = 52/95 (53%), Gaps = 1/95 (1%)
Query: 196 LDTSLMIIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNS 255
L+T I+ K+MK A FN PV+ LG+ DY ++ PMD GT+ NL+K Y++
Sbjct: 170 LNTCSQILVKLMKHKWAWVFNTPVDVVGLGLHDYHQVVKKPMDLGTVKLNLDKG-FYVSP 228
Query: 256 EDVYNDVRYIWENCYKYNNKGDYIVDLMKRVKKNF 290
D DVR ++N YN KG + + ++ +F
Sbjct: 229 IDFATDVRLTFDNAMTYNPKGQDVYFMADKLLDHF 263
>At1g06230 Ring3-like bromodomain protein
Length = 766
Score = 58.5 bits (140), Expect = 8e-09
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYND 261
++ ++MK FN PV+ + LG+ DY+ II+ PMD GTI S L KN Y + + D
Sbjct: 428 LLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKN-LYKSPREFAED 486
Query: 262 VRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYWA 295
VR + N YN +G + + + + F + WA
Sbjct: 487 VRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWA 520
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 7 HKKGRPKGNT--NPVSVTLTNEQEEEEEEEEETSAFDVGSKEDNNSGMEVDTPSSTGTDQ 64
H+ R GNT + L ++ E++ E +S+ S ++S + D+ SS+G+DQ
Sbjct: 706 HEFSREGGNTAKKTLPTPLPSQVEKQNNETSRSSSSSSSSSSSSSSDSDSDSSSSSGSDQ 765
>At5g10550 bromodomain protein - like
Length = 678
Score = 57.4 bits (137), Expect = 2e-08
Identities = 35/98 (35%), Positives = 51/98 (51%), Gaps = 1/98 (1%)
Query: 193 KHELDTSLMIIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKY 252
K + T I+ K+MK + F PV+ LG+ DY I+D PMD GT+ NLEK Y
Sbjct: 247 KSMMTTCGQILVKLMKHKWSWVFLNPVDVVGLGLHDYHRIVDKPMDLGTVKMNLEKG-LY 305
Query: 253 MNSEDVYNDVRYIWENCYKYNNKGDYIVDLMKRVKKNF 290
+ D +DVR + N YN KG + + +++ F
Sbjct: 306 RSPIDFASDVRLTFTNAMSYNPKGQDVYLMAEKLLSQF 343
>At1g17790 unknown protein (At1g17790)
Length = 487
Score = 57.4 bits (137), Expect = 2e-08
Identities = 32/95 (33%), Positives = 50/95 (51%), Gaps = 1/95 (1%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYND 261
++ K+MK +A FNVPV+ + LG+ DY +I+ PMD GT+ + L K+ Y + D D
Sbjct: 139 LLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKS-LYKSPLDFAED 197
Query: 262 VRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYWAA 296
VR + N YN G + + + F W +
Sbjct: 198 VRLTFNNAILYNPIGHDVYRFAELLLNMFEDKWVS 232
>At3g01770 unknown protein
Length = 620
Score = 54.3 bits (129), Expect = 2e-07
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 29/211 (13%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYND 261
+++++M FN PV+ L IPDYF II PMD GT+ S L + Y + + D
Sbjct: 136 LLKRLMSQQHCWLFNTPVDVVKLNIPDYFTIIKHPMDLGTVKSKL-TSGTYSSPSEFSAD 194
Query: 262 VRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYWAAAGLYSEQPKGSTDFKQEESMLVESP 321
VR + N YN + + + K F W +++ +S
Sbjct: 195 VRLTFRNAMTYNPSDNNVYRFADTLSKFFEVRW-------------------KTIEKKSS 235
Query: 322 GGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEE---- 377
G + SN L D + + + KM ++N + + + D + +
Sbjct: 236 GTKSEPSNLATLAHKDIAIPEPVAKKRKMNAVKRNSLLEPAKRVMTDEDRVKLGRDLGSL 295
Query: 378 NHGPEDV-----EEDEEEDGEGENEEEIEMN 403
P + + +E+ G++E EI++N
Sbjct: 296 TEFPVQIINFLRDHSSKEERSGDDEIEIDIN 326
Score = 30.4 bits (67), Expect = 2.3
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 372 DGMEEENHGPEDVEEDEEEDGEGE-----------NEEEIEMNRVKRRMDETLRHGGTLA 420
DG ++ N P++ E E+ +EI +N+ ++R ETL+
Sbjct: 428 DGHQDGNSAPKEKELPPEKRYRAALLKNRFADIILKAQEITLNQNEKRDPETLQREKEEL 487
Query: 421 EESEVGDTAALHDEYKNTQQEGQAAVVQQQKKHKEPQDKHQKAKLLE 467
E + + A L E K ++ + A Q+ K+ E + + + LLE
Sbjct: 488 ELQKKKEKARLQAEAKEAEEARRKAEAQEAKRKLELEREAARQALLE 534
>At1g76380 unknown protein
Length = 579
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/204 (28%), Positives = 92/204 (44%), Gaps = 27/204 (13%)
Query: 78 RKPVGRVKVKLKTSKMLDSQPNSSD----APSQSDTDKSSQQQHGLERHGVNADRIEDSV 133
R P + +L++S + N S+ + S+ D D+ ++H L HG+N+ DS
Sbjct: 38 RNPNEENEEELRSSSRNPNFSNRSNRRRNSNSEDDDDERRDKKHRL-LHGLNSHEGRDSS 96
Query: 134 TSFP---DLKYGASYKKAGSIKIKSSKVLGLNADQTSKPLPISSEIIHPKERKMPPLNPR 190
S DL A ++ KI S D T + +++I+ +R + P
Sbjct: 97 NSKSGGGDLDSDARNRR----KIDGS-------DNTGEKASKATDIL--LQRSLVESTPL 143
Query: 191 YNKHELDTSLMIIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKND 250
+K L I+ +V K D ++ P +PE L PDY++II PMDF T+ LE +
Sbjct: 144 PDKKLL---FFILDRVQKKDTYGVYSDPADPEEL--PDYYEIIKNPMDFTTLRKKLE-SG 197
Query: 251 KYMNSEDVYNDVRYIWENCYKYNN 274
Y E DV I N +YN+
Sbjct: 198 AYTTLEQFEQDVFLICTNAMEYNS 221
>At1g73150 unknown protein
Length = 461
Score = 53.1 bits (126), Expect = 3e-07
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYND 261
++ K+MK + FN PV+ LG+ DY +II PMD GT+ + L K+ Y + + D
Sbjct: 126 LLTKLMKHKSGWIFNTPVDVVTLGLHDYHNIIKEPMDLGTVKTRLSKS-LYKSPLEFAED 184
Query: 262 VRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYW 294
VR + N YN G + + + + F + W
Sbjct: 185 VRLTFNNAMLYNPVGHDVYHMAEILLNLFEEKW 217
>At5g55040 putative protein
Length = 145
Score = 52.0 bits (123), Expect = 8e-07
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 201 MIIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYN 260
+I+ K+ K D + PV+PE L PDY D+I+ PMDF T+ L N Y E++ +
Sbjct: 53 LILDKLQKKDIYGVYAEPVDPEEL--PDYHDMIEHPMDFSTVRKKL-ANGSYSTLEELES 109
Query: 261 DVRYIWENCYKYNN 274
DV I N +YN+
Sbjct: 110 DVLLICSNAMQYNS 123
>At5g14270 kinase - like protein
Length = 688
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYND 261
+++++M FN PV+ L I DYF++I+ PMD GT+ + L + Y + D
Sbjct: 144 LLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKL-TSGTYSCPSEFAAD 202
Query: 262 VRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYW 294
VR + N YN G+ + + ++K F W
Sbjct: 203 VRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRW 235
>At3g47270 putative protein
Length = 671
Score = 50.8 bits (120), Expect = 2e-06
Identities = 50/219 (22%), Positives = 93/219 (41%), Gaps = 23/219 (10%)
Query: 262 VRYIWENCYKYNNKGDYIVDLM--KRVKKNFMKYWAAAGLYSEQPKGSTDFKQEESMLVE 319
V+ ++ENC K + + +RV ++ + E+ K + K++E E
Sbjct: 260 VKLVYENCEVLKKKVGRLEGYLGIQRVPASYTR---------EEQKEEDEKKEQEEEKQE 310
Query: 320 SPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENH 379
G E+ L + GD +K E+ K E + E E +++ +E
Sbjct: 311 EEGKEEELEKVEYR----GDERTEKQEIPKQGDEEMEGEEEKQKEEGKEEEEEKVEYRGD 366
Query: 380 GPEDVEE-----DEEEDGEGENEEEIEMNRVKRRMDETLRHGGTLAEESEVGDTAALHDE 434
+ +E DEE +GE E +EE + +++ H EE+E + DE
Sbjct: 367 EGTEKQEIPKQGDEEMEGEEEKQEEEGKEEEEEKVEYRDHHSTCNVEETEKQENPKQGDE 426
Query: 435 YKNTQQEGQAAVVQQQKKHKEPQDKHQKAKLLESLCSEN 473
+ ++EG+ V++ +H E +D QKA ++ S +N
Sbjct: 427 -EMEREEGKEENVEEHDEHDETED--QKAYVILSDDEDN 462
Score = 34.7 bits (78), Expect = 0.12
Identities = 51/235 (21%), Positives = 90/235 (37%), Gaps = 55/235 (23%)
Query: 267 ENCYKYNNKGDYIVDLMKRVKKNFMKYWAAAGLYSEQPKGSTDFKQEESMLVESPG---- 322
E K +GD +R +K + + E+ K + K+EE VE G
Sbjct: 316 EELEKVEYRGD------ERTEKQEIPKQGDEEMEGEEEKQKEEGKEEEEEKVEYRGDEGT 369
Query: 323 --------GEDSLSNTDELLGTDGDVDD-------DKGEVTKMETSEKNCSPSDGRHEVN 367
G++ + +E +G ++ D +E +EK +P G E+
Sbjct: 370 EKQEIPKQGDEEMEGEEEKQEEEGKEEEEEKVEYRDHHSTCNVEETEKQENPKQGDEEME 429
Query: 368 EVDDDGMEE--ENHGPEDVEEDE---------EEDGEGENEEEIEMNRVKRRMDETLRHG 416
++G EE E H D ED+ E++G E+E + + +ET
Sbjct: 430 R--EEGKEENVEEHDEHDETEDQKAYVILSDDEDNGTAPTEKESQPQK-----EETTE-- 480
Query: 417 GTLAEESEVGDTAALHDEYKNTQ-QEGQAAVVQQQKKHKEPQDKH---QKAKLLE 467
+ +E V + HDE+ T+ QE ++ + P +K QK ++ E
Sbjct: 481 --VPKEENVEE----HDEHDETEDQEAYVILLDDEDNGTAPTEKESQPQKEEITE 529
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 1 MKRKRGHKKGRPKGNTNPVSVTLTNEQEEEEEEEEETSAFDVGSKEDNNSGMEVDTPSST 60
+K+K G +G P S T ++EE+E++E+E + KE+ +E T
Sbjct: 270 LKKKVGRLEGYLGIQRVPASYTREEQKEEDEKKEQEEEKQEEEGKEEELEKVEYRGDERT 329
Query: 61 GTDQHSNLANINPDG--SIRKPVGRVKVKLKTSKMLDSQPNSSDAPSQSDTDKSSQQQ 116
+ + +G +K G+ + + K D + P Q D + +++
Sbjct: 330 EKQEIPKQGDEEMEGEEEKQKEEGKEEEEEKVEYRGDEGTEKQEIPKQGDEEMEGEEE 387
>At1g20290 hypothetical protein
Length = 497
Score = 50.8 bits (120), Expect = 2e-06
Identities = 37/155 (23%), Positives = 69/155 (43%), Gaps = 4/155 (2%)
Query: 304 PKGSTDFKQEESMLVESPG----GEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSP 359
P S +K SM+ G E+ +E + + ++++ E + E E+
Sbjct: 340 PSDSDFYKFTPSMVHVGEGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 399
Query: 360 SDGRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDETLRHGGTL 419
+ E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 400 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 459
Query: 420 AEESEVGDTAALHDEYKNTQQEGQAAVVQQQKKHK 454
EE E + +E + ++E + +V+++KK +
Sbjct: 460 EEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKKKR 494
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/125 (24%), Positives = 59/125 (47%)
Query: 335 GTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEG 394
GT ++++ E + E E+ + E E +++ EEE E+ EE+EEE+ E
Sbjct: 358 GTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 417
Query: 395 ENEEEIEMNRVKRRMDETLRHGGTLAEESEVGDTAALHDEYKNTQQEGQAAVVQQQKKHK 454
E EEE E + +E EE E + +E + ++E + +++++ +
Sbjct: 418 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 477
Query: 455 EPQDK 459
E ++K
Sbjct: 478 EEEEK 482
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/135 (22%), Positives = 63/135 (45%)
Query: 328 SNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENHGPEDVEED 387
S++D T V +G + + E E+ + E E +++ EEE E+ EE+
Sbjct: 341 SDSDFYKFTPSMVHVGEGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 400
Query: 388 EEEDGEGENEEEIEMNRVKRRMDETLRHGGTLAEESEVGDTAALHDEYKNTQQEGQAAVV 447
EEE+ E E EEE E + +E EE E + +E + ++E +
Sbjct: 401 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 460
Query: 448 QQQKKHKEPQDKHQK 462
+++++ +E +++ ++
Sbjct: 461 EEEEEEEEEEEEEEE 475
Score = 49.7 bits (117), Expect = 4e-06
Identities = 29/130 (22%), Positives = 61/130 (46%)
Query: 337 DGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGEN 396
+G + + E + E E+ + E E +++ EEE E+ EE+EEE+ E E
Sbjct: 357 EGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 416
Query: 397 EEEIEMNRVKRRMDETLRHGGTLAEESEVGDTAALHDEYKNTQQEGQAAVVQQQKKHKEP 456
EEE E + +E EE E + +E + ++E + +++++ +E
Sbjct: 417 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 476
Query: 457 QDKHQKAKLL 466
+++ +K ++
Sbjct: 477 EEEEEKKYMI 486
Score = 49.7 bits (117), Expect = 4e-06
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 323 GEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENHGPE 382
GE ++ +E + + ++++ E + E E+ + E E +++ EEE E
Sbjct: 356 GEGTIVQAEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 413
Query: 383 DVEEDEEEDGEGENEEEIEMNRVKRRMDETLRHGGTLAEESEVGDTAALHDEYKNTQQEG 442
+ EE+EEE+ E E EEE E + +E EE E + +E + ++E
Sbjct: 414 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 473
Query: 443 QAAVVQQQKKHKEPQDKHQKAK 464
+ +++KK+ + K +K +
Sbjct: 474 EEEEEEEEKKYMIVKKKKKKRR 495
Score = 48.9 bits (115), Expect = 6e-06
Identities = 29/128 (22%), Positives = 61/128 (47%)
Query: 340 VDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEE 399
V ++ E + E E+ + E E +++ EEE E+ EE+EEE+ E E EEE
Sbjct: 361 VQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 420
Query: 400 IEMNRVKRRMDETLRHGGTLAEESEVGDTAALHDEYKNTQQEGQAAVVQQQKKHKEPQDK 459
E + +E EE E + +E + ++E + +++++ +E +++
Sbjct: 421 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 480
Query: 460 HQKAKLLE 467
+K +++
Sbjct: 481 EKKYMIVK 488
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/108 (25%), Positives = 51/108 (46%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 378 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 437
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRM 409
E E +++ EEE E+ EE+EEE+ E E EEE E K+ M
Sbjct: 438 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYM 485
Score = 43.5 bits (101), Expect = 3e-04
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 301 SEQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPS 360
+E+ + + ++EE E E+ +E + + ++++ E + E E+
Sbjct: 363 AEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 422
Query: 361 DGRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDE 411
+ E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 423 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 473
Score = 43.5 bits (101), Expect = 3e-04
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 384 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 443
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRR 408
E E +++ EEE E+ EE+EEE+ E E EEE + VK++
Sbjct: 444 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKK 490
Score = 43.5 bits (101), Expect = 3e-04
Identities = 27/114 (23%), Positives = 53/114 (45%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 430
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDETLRH 415
E E +++ EEE E+ EE+EEE+ E E EEE E + +E ++
Sbjct: 431 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKY 484
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/110 (24%), Positives = 51/110 (45%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 427
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDE 411
E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 428 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 477
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/110 (24%), Positives = 51/110 (45%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 428
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDE 411
E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 429 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 478
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/110 (24%), Positives = 51/110 (45%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 429
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDE 411
E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 430 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 479
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/110 (24%), Positives = 51/110 (45%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 424
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDE 411
E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 425 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 474
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/110 (24%), Positives = 51/110 (45%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 426
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDE 411
E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 427 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 476
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/110 (24%), Positives = 51/110 (45%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 425
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDE 411
E E +++ EEE E+ EE+EEE+ E E EEE E + +E
Sbjct: 426 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 475
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 385 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 444
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEE----IEMNRVKRR 408
E E +++ EEE E+ EE+EEE+ E E EE+ ++ + KRR
Sbjct: 445 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKKKRR 495
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/111 (21%), Positives = 53/111 (47%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ + + ++EE E E+ +E + + ++++ E + E E+ +
Sbjct: 387 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 446
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDET 412
E E +++ EEE E+ EE+EEE+ E E ++ + + + K++ T
Sbjct: 447 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKKKRRST 497
>At3g54610 histone acetyltransferase (HAT1)
Length = 568
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 192 NKHELDTSLMIIRKVMKMDA-AEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKND 250
N+ +L+ + + K M+ A A PF PV ++ +PDY+DII P+D I +E
Sbjct: 456 NQKQLNALMRALLKTMQDHADAWPFKEPV--DSRDVPDYYDIIKDPIDLKVIAKRVESEQ 513
Query: 251 KYMNSEDVYNDVRYIWENCYKYNNKGDYIVDLMKRVKKNF 290
Y+ + D R ++ NC YN+ R++ +F
Sbjct: 514 YYVTLDMFVADARRMFNNCRTYNSPDTIYYKCATRLETHF 553
>At3g27255 unknown protein
Length = 503
Score = 46.2 bits (108), Expect = 4e-05
Identities = 29/93 (31%), Positives = 42/93 (44%), Gaps = 1/93 (1%)
Query: 202 IIRKVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYND 261
++RK+ + F PV+ L IPDY I PMD GT+ NL + Y + + D
Sbjct: 183 LLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNL-ASGVYSSPHEFAAD 241
Query: 262 VRYIWENCYKYNNKGDYIVDLMKRVKKNFMKYW 294
VR + N YN G + + + K F W
Sbjct: 242 VRLTFTNAMTYNPPGHDVHIMGDILSKLFEARW 274
>At2g02200 putative protein on transposon FARE2.10 (cds2)
Length = 586
Score = 46.2 bits (108), Expect = 4e-05
Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 245 NLEKNDKYMNSEDVYNDVRYIWENCYKYNNKGDYIVDLM--KRVKKNFMKYWAAAGLYSE 302
N E D S V+ ++ENC K + + +RV ++ + E
Sbjct: 154 NPEDKDLKRKSMSFGEKVKLVYENCEVLKKKVGRLEGYLGIERVPASYTR---------E 204
Query: 303 QPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSDG 362
+ K + K++E E G E+ L E + GD +K E+ K E +G
Sbjct: 205 EQKEEDEKKEQEEEKQEEEGKEEKL----EKIEYRGDEGTEKQEIPKQGDEEM-----EG 255
Query: 363 RHEVNEVDDDGMEEEN---HGPEDVEE-------DEEEDGEGENEEEIEMNRVKRRMDET 412
E E + EEE G E E+ DEE +GE E ++E + +++
Sbjct: 256 EEEKQEEEGKEEEEEKVEYRGDEGTEKQEIPKQGDEEMEGEEEKQKEEGKEEEEEKVEYR 315
Query: 413 LRHGGTLAEESEVGDTAALHDEYKNTQQEGQAAVVQQQKKHKEPQDKHQKAK 464
H EE+E + DE ++ + V++++ + E D+H + +
Sbjct: 316 DHHSTCNVEETEKQENPKQGDEEMEREEGKEEKVLKEE--NVEEHDEHDETE 365
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 1 MKRKRGHKKGRPKGNTNPVSVTLTNEQEEEEEEEEETSAFDVGSKEDNNSGMEVDTPSST 60
+K+K G +G P S T ++EE+E++E+E + KE+ +E T
Sbjct: 181 LKKKVGRLEGYLGIERVPASYTREEQKEEDEKKEQEEEKQEEEGKEEKLEKIEYRGDEGT 240
Query: 61 GTDQHSNLANINPDGSIRK--PVGRVKVKLKTSKMLDSQPNSSDAPSQSDTDKSSQQQ 116
+ + +G K G+ + + K D + P Q D + +++
Sbjct: 241 EKQEIPKQGDEEMEGEEEKQEEEGKEEEEEKVEYRGDEGTEKQEIPKQGDEEMEGEEE 298
Score = 29.6 bits (65), Expect = 4.0
Identities = 33/145 (22%), Positives = 58/145 (39%), Gaps = 9/145 (6%)
Query: 302 EQPKGSTDFKQEESMLVESPGGEDSLSNTDELLGTDGDVDDDKGEVTKMETSEKNCSPSD 361
E+ K K+E VE D + + + D D+ K S+K +
Sbjct: 342 EEGKEEKVLKEEN---VEEHDEHDETEDQEAYVILSDDEDNGTAPTEKESESQKEETTEV 398
Query: 362 GRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEGENEEEIEMNRVKRRMDETLRHGGTLAE 421
+ E E D+ E E+ + D+E++G E+E + K + E R T +
Sbjct: 399 AKEENVEEHDEHDETEDQEAYVILSDDEDNGTAPTEKESQPQ--KEEIKEVPRE--TKKD 454
Query: 422 ESEVGDTAALHDEYKNTQQEGQAAV 446
+ +V T E + TQ GQ+++
Sbjct: 455 DEDVNQTPLSTQEEEITQ--GQSSL 477
>At1g05910 unknown protein
Length = 1210
Score = 45.1 bits (105), Expect = 9e-05
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 335 GTDGDVDDDKGEVTKMETSEKNCSPSDGRHEVNEVDDDGMEEENHGPEDVEEDEEEDGEG 394
G D D ++K + E + DG +EV D+ E+E G ++ EED ++D EG
Sbjct: 163 GADQDTSEEKDGQDETENGNELDDADDGENEVEAEDEGNGEDEGDGEDEGEEDGDDDEEG 222
Query: 395 ENEEE 399
+ E+E
Sbjct: 223 DEEQE 227
Score = 31.2 bits (69), Expect = 1.4
Identities = 35/133 (26%), Positives = 52/133 (38%), Gaps = 15/133 (11%)
Query: 151 IKIKSSKVLGLNADQTS-KPLPISSEIIHPKERKMPP-----LNPRYNKHELDTSLMIIR 204
I+ S + GLN +PLP ++ PKE P +H L M +R
Sbjct: 846 IEAALSVISGLNGKPDGPQPLPELPKV--PKEPTGPKPAEVKAKVEAEQHALRRLRMCLR 903
Query: 205 ----KVMKMDAAEPFNVPVNPEALGIPDYFDIIDTPMDFGTICSNLEKNDKYMNSEDVYN 260
+++ F+ PV E P+Y II PMD T+ ++ +Y+
Sbjct: 904 DVCNRILYDKRFSAFHFPVTDE--DAPNYRSIIQIPMDTATLLQRVD-TGQYLTCTPFLQ 960
Query: 261 DVRYIWENCYKYN 273
DV I N YN
Sbjct: 961 DVDLIVRNAKAYN 973
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.305 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,021,469
Number of Sequences: 26719
Number of extensions: 679052
Number of successful extensions: 8325
Number of sequences better than 10.0: 558
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 342
Number of HSP's that attempted gapping in prelim test: 3887
Number of HSP's gapped (non-prelim): 2337
length of query: 496
length of database: 11,318,596
effective HSP length: 103
effective length of query: 393
effective length of database: 8,566,539
effective search space: 3366649827
effective search space used: 3366649827
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140550.8