BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.12 - phase: 0
(504 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 174 1e-43
At4g15600 hypothetical protein 172 3e-43
At2g07670 putative non-LTR retrolelement reverse transcriptase 169 4e-42
At2g01050 hypothetical protein 167 2e-41
At2g07740 putative Ta11-like non-LTR retroelement protein 153 2e-37
At4g07521 putative protein 133 2e-31
At4g08820 putative protein 105 6e-23
At5g10850 putative protein 70 3e-12
At2g28980 putative non-LTR retroelement reverse transcriptase 61 2e-09
At2g01550 putative non-LTR retroelement reverse transcriptase 60 3e-09
At3g43320 putative protein 59 5e-09
At2g01840 putative non-LTR retroelement reverse transcriptase 52 1e-06
At2g19100 putative non-LTR retroelement reverse transcriptase 49 8e-06
At2g25550 putative non-LTR retroelement reverse transcriptase 48 1e-05
At2g17920 putative Ta11-like non-LTR retroelement protein 46 4e-05
At4g04660 46 5e-05
At2g41590 putative Ta11-like non-LTR retroelement protein 45 9e-05
At3g31430 hypothetical protein 44 2e-04
At5g25200 putative protein 44 3e-04
At2g41570 putative Ta11-like non-LTR retroelement protein 43 5e-04
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 174 bits (441), Expect = 1e-43
Identities = 88/227 (38%), Positives = 128/227 (55%)
Query: 45 IPIREKENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNT 104
IP ++ K V ++ G P I I + + WK + VK+LG+ +
Sbjct: 52 IPEEILDDEFVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAA 111
Query: 105 MKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
+ RL+++WK G ++D FFMV+F++ + +TGGPW F CL V W+PEF
Sbjct: 112 VSHRLREMWKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEF 171
Query: 165 ASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVE 224
++ T +WVR + + +Y +S L+++A LGRP+KVD L ERG+FARVCVE
Sbjct: 172 NPLKDEIVTTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVE 231
Query: 225 IDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNCMEKPS 271
+DL P+ G + VNG Y V YEGL IC+ CG YGHL NC ++ S
Sbjct: 232 VDLKRPLQGALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELS 278
>At4g15600 hypothetical protein
Length = 655
Score = 172 bits (437), Expect = 3e-43
Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 2/224 (0%)
Query: 45 IPIREK--ENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGY 102
+P+ E ++ + +R+E +G P I IE + + +K ++VK+LG+
Sbjct: 48 VPVPESVLDDDFVRSRMRLEFPDGVDGEPVITIEKEVLDAMNGLYKQCMLVKILGRHTTI 107
Query: 103 NTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTP 162
+ +L+ +W+ GG ++D FFMV+F+ D +TGGPW + L V W+P
Sbjct: 108 EVLSRKLRDLWRPTGGMSVLDLPRQFFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSP 167
Query: 163 EFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVC 222
EF ++ T VWVR L + +Y LL +A+ LG+PIKVD TL+ ERG+FARVC
Sbjct: 168 EFNPLRDVIETTPVWVRVANLPVTFYHNEILLGIAAGLGKPIKVDLTTLRKERGRFARVC 227
Query: 223 VEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNC 266
VE++L P+ G + VNG Y V YEGL IC+ CG YGH NC
Sbjct: 228 VEVNLKNPLKGTLVVNGERYFVSYEGLQTICSLCGIYGHTVNNC 271
>At2g07670 putative non-LTR retrolelement reverse transcriptase
Length = 913
Score = 169 bits (427), Expect = 4e-42
Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 3/221 (1%)
Query: 59 VRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGG 118
+R+E G I I + + + WK +VVK+LG+++ + RL+++WK QG
Sbjct: 24 MRVEFPNGADGESVITIGREVLDVMNSMWKQCMVVKVLGRNISIANLNRRLREMWKPQGA 83
Query: 119 FDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWV 178
++D FFM++F++ + +TGGPW F L V W+PEF ++ T +WV
Sbjct: 84 MFVVDLPCQFFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWV 143
Query: 179 RFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVN 238
R + L Y S L+ +A +LG+P+KVD TL VER +FAR+C+E+DL P+ G + +N
Sbjct: 144 RLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLN 203
Query: 239 GHWYKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPN 279
G Y V YEGL IC+ CG YGHL C P T + N
Sbjct: 204 GERYFVSYEGLANICSRCGMYGHLIHTC---PQTIAEKEVN 241
>At2g01050 hypothetical protein
Length = 515
Score = 167 bits (422), Expect = 2e-41
Identities = 84/250 (33%), Positives = 137/250 (54%), Gaps = 11/250 (4%)
Query: 21 PPDTIKQSSQKPSFRDKLLESNQDIPIREKENMIEKKLVR----IELEEGNRLLPKIYIE 76
PPD ++ + K ++ + I + E++I+ + VR +E +G P I I
Sbjct: 14 PPDKLESWATK-------VKGSAGGGILKPEDVIDDEFVRERVGLEFPDGEDEEPVITIG 66
Query: 77 PQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQA 136
+ + + WK ++VK+LG + + + +L+++WK G +MD FFM++F+
Sbjct: 67 EEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELE 126
Query: 137 ADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAM 196
+ +TGGPW + + L V W+ F + T VWVR + YY L+ +
Sbjct: 127 EEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEI 186
Query: 197 ASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNC 256
A LGRP+KVD NT+ ++G+FARVC+E++L P+ G + +NG Y V YEGL IC++C
Sbjct: 187 ARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYFVAYEGLSKICSSC 246
Query: 257 GCYGHLGRNC 266
G YGHL +C
Sbjct: 247 GIYGHLVHSC 256
>At2g07740 putative Ta11-like non-LTR retroelement protein
Length = 409
Score = 153 bits (386), Expect = 2e-37
Identities = 77/198 (38%), Positives = 111/198 (55%), Gaps = 7/198 (3%)
Query: 91 LVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLI 150
LVVK+LG+ + + RL+++WK GG +++ FFMVKFD D G PW +
Sbjct: 33 LVVKVLGRHITIADLNRRLRELWKPNGGMSVLNLPRSFFMVKFDLEEDYLAAAIGDPWRV 92
Query: 151 FDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNT 210
L + W+P+F ++ T+VWVR L + YY E+ L A+ LG+PIKV+
Sbjct: 93 LGSILMIRAWSPDFNPIRDEIVTTLVWVRISNLPVNYYHETILTAIVEGLGKPIKVNLTI 152
Query: 211 LKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNCMEKP 270
L+ ER FARVCV+++L P+ G + VNG Y YEGL++IC+ CG +GHL C +
Sbjct: 153 LRKERAHFARVCVKVNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPK-- 210
Query: 271 STFDPRSPNHHTAGGNNP 288
RSP G +P
Sbjct: 211 -----RSPGPVVQAGASP 223
>At4g07521 putative protein
Length = 223
Score = 133 bits (335), Expect = 2e-31
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 122 MDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFP 181
MD FFM++F+ + +TG PW +F L V W PEF + T VW+R
Sbjct: 1 MDLPRQFFMIRFELQEEYLAALTGDPWRVFGSNLTVQAWLPEFDPLRDVIATTPVWIRLT 60
Query: 182 GLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHW 241
+ + +Y S L+++A LG+P KVDT TL ER +FARVCVE++L P+ G I VNG
Sbjct: 61 NVPVNFYHPSILMSIAGGLGKPFKVDTMTLNHERARFARVCVEMNLAKPLKGTIMVNGDR 120
Query: 242 YKVQYEGLHLICTNCGCYGHLGRNC---MEKPSTFDPRS 277
Y V YEGL IC+ CG YGHL C +++ S PR+
Sbjct: 121 YYVAYEGLTNICSTCGLYGHLVHTCPRVVQEQSKEGPRT 159
>At4g08820 putative protein
Length = 404
Score = 105 bits (262), Expect = 6e-23
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 37/205 (18%)
Query: 47 IREKENMIE----KKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGY 102
I + EN+I+ ++ VR+E G P I I + + + WK ++VK
Sbjct: 13 ILKPENVIDDAFVRERVRLEFPNGEDGEPVITIGEEVLEAMNGLWKRCMIVK-------- 64
Query: 103 NTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTP 162
FFM++F+ + +TGGPW +F + L V W+P
Sbjct: 65 -------------------------FFMIRFELEEEYLAALTGGPWRVFGNYLMVQDWSP 99
Query: 163 EFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVC 222
F + T VWVR + + YY L +A LG+ +KVD NT+ RG+FARVC
Sbjct: 100 NFDPLRDDIVTTPVWVRLTNIPVNYYHRCLLEEIARGLGKLLKVDLNTITFGRGRFARVC 159
Query: 223 VEIDLTVPVVGKIWVNGHWYKVQYE 247
+E++L P+ G + +NG Y V YE
Sbjct: 160 IEVNLAKPLKGTVLINGDRYFVAYE 184
>At5g10850 putative protein
Length = 181
Score = 70.1 bits (170), Expect = 3e-12
Identities = 32/104 (30%), Positives = 58/104 (55%)
Query: 61 IELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFD 120
+E +G P I I + + K++L+VK+ G+++ + + +L+++WK +G
Sbjct: 67 LEFPDGEDGEPVITIGSEVLAAMNGLLKNSLIVKVPGRNMTISALSRKLREMWKPRGAMS 126
Query: 121 IMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
++D FFM++F+ + +TGGPW FD L V W+PEF
Sbjct: 127 VVDLPRKFFMIRFEAEEEYMAALTGGPWRAFDRYLMVQAWSPEF 170
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 60.8 bits (146), Expect = 2e-09
Identities = 67/322 (20%), Positives = 129/322 (39%), Gaps = 15/322 (4%)
Query: 73 IYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGG---FDIMDNDNGFF 129
+ + + F++ W D L+ + S + + KIW L D D
Sbjct: 51 VQVPNEIFEDSTPLWDDLLIGRFPQISPHIAKVHVIVNKIWPLGDKTVKIDAYVVDTKTI 110
Query: 130 MVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYD 189
+ +++ + +V+ G W I D + V+ W+P ++ +W+ + +
Sbjct: 111 KFRIRESSVRARVLRRGMWNIADMPMIVSKWSPVAEDAQPEIKTMPMWITIKNVPRSMFT 170
Query: 190 ESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGH-----WYKV 244
L +AS +G P K+ +T+ + A+V VE DLT + + +
Sbjct: 171 WKGLSFLASPIGEPKKLHPDTVLCNSFEEAKVFVEADLTQEMPKQFRFKSETGVDAMVEY 230
Query: 245 QYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPNH-HTAGGNNPPSNPEPSQPRQNPTQ 303
+Y L C++C +GH+ C+ +PS +P T PP E +P + ++
Sbjct: 231 KYPWLPPRCSSCSKWGHIQEVCLTRPSPNQLSTPTEIETEDKTEPPLMKE--KPLEILSK 288
Query: 304 TCPDAINSQLMACNQNGNSIIDHNKDVTANK-RNAINRIDDNQVLHGDWLVVTRRKKTPI 362
+ P A ++ + + + + N V NK + ++N G W V+ K
Sbjct: 289 S-PSATLTKTLNGDSHTQKVPMKNPTVLQNKGKEVAEENEENLKDEGPWHTVS-PAKVGR 346
Query: 363 QHSLNASKSVTHKT-NRFQALS 383
Q S + V H + +RF L+
Sbjct: 347 QRSPQPQEVVNHASPSRFDVLA 368
>At2g01550 putative non-LTR retroelement reverse transcriptase
Length = 1449
Score = 60.1 bits (144), Expect = 3e-09
Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 29/278 (10%)
Query: 25 IKQSSQKPSFRDKLLESNQDI---PIRE-------KENMIEKKLVRIELE-EGNRLLPKI 73
+ S Q P+ LE+ Q + P ++ K ++K V E++ + ++PK
Sbjct: 48 VSDSDQFPALSQSALETTQRMSHPPAKKSWVNAARKHTFTQQKFVSEEVDGQATVVVPK- 106
Query: 74 YIEPQTFQELCTPWKDALVVKLLG-KSLGYNTMKDRLQKIWKLQGGFDIMD----NDNGF 128
+ F W+D L+ L K+ + + KIW+L +++D ND+
Sbjct: 107 ----EVFLGAKPLWEDFLIGHFLNAKAPHVGKIHMIVNKIWRLGDKSNLIDVYAVNDSTI 162
Query: 129 FMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYY 188
+ A + + + G W I D + V+ W+P + +W+ + +
Sbjct: 163 -KFRIRNEAMRRRALNRGMWNIMDLPMVVSKWSPFAEETQPAMKSIQLWITLTDVPPSLF 221
Query: 189 DESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGH-------W 241
+ L +ASA+G+PI++ T A++ VE DLT + + G
Sbjct: 222 TDKGLEFLASAVGKPIRLHPKTESCSSFDEAQLLVEADLTKELPKEFVFTGEEEGELAAV 281
Query: 242 YKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPN 279
K Y L C+ C +GHL +C+ T +PN
Sbjct: 282 IKYSYPWLPPRCSCCDKWGHLRDSCLSALKTCSRDTPN 319
>At3g43320 putative protein
Length = 510
Score = 59.3 bits (142), Expect = 5e-09
Identities = 51/244 (20%), Positives = 103/244 (41%), Gaps = 18/244 (7%)
Query: 49 EKENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLG-KSLGYNTMKD 107
+K + ++K +E++ K+ + + F W+D LV +L K+ +
Sbjct: 91 QKRSFTKQKFEVVEVDGQE----KVVVPKEVFLGAKPLWEDFLVGNILNSKAPHVGKIHM 146
Query: 108 RLQKIWKLQGG---FDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
+ KIW+L D+++ + + A + +++ W I + ++ WTP
Sbjct: 147 IVNKIWRLGDKSTLIDVLEVNESTVKFRVRNEAMRHRILNRRMWNIMGLPMIISKWTPYS 206
Query: 165 ASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVE 224
+ +WV + L + + L +AS +G+P+++ T E + A++ VE
Sbjct: 207 EDVQPALKSIPLWVTLSNVPLTMFTDKGLEFLASVVGKPVRLHPKTEACESFEEAKILVE 266
Query: 225 IDLTVPVVGKIWVNGH-------WYKVQYEGLHLICTNCGCYGHLGRNCM---EKPSTFD 274
DLT + + ++G Y L C C +GHL +C+ +KP++
Sbjct: 267 ADLTKDLPKEYILSGEEEGELDAVIHYSYPWLSPHCQVCKKWGHLRDSCLLEKQKPTSTL 326
Query: 275 PRSP 278
SP
Sbjct: 327 NNSP 330
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 51.6 bits (122), Expect = 1e-06
Identities = 59/278 (21%), Positives = 102/278 (36%), Gaps = 21/278 (7%)
Query: 111 KIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAK 170
+ W L G N F F + V+ GPW D L V WTP+
Sbjct: 60 RTWGLVGFVRGRIIQNRRFQFIFPSEESLDTVLRRGPWSFADRMLVVERWTPDM--DPLV 117
Query: 171 VDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVP 230
++ W++ + L + + + +A +LG VD + R +F R+ ++ D+ P
Sbjct: 118 LNFIPFWIQVREIPLQFLNLEVIDNIAGSLGERKAVDFDPFTTTRVEFVRIQIKWDVNHP 177
Query: 231 V------VGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNC-MEKPSTFDPRSPNHHTA 283
+ + VN YE L C CG H +C ++ + D + +
Sbjct: 178 LRFQRNYQFSLGVN-TVLSFYYERLRGFCDVCGRMTHDAGSCVLQNGALHDSDGDDDNAD 236
Query: 284 GGNNPPSNP--------EPSQPRQNPTQTCPDAINSQLMA-CNQNGNSIIDHNKDVTANK 334
G NP + QP Q+ + + + + A N+ + D D T N
Sbjct: 237 GDQEFHGNPGVHIQEIGDDGQPIQDGDEVGEEIVPGPVGADVNEAKEEVSD--IDPTHNA 294
Query: 335 RNAINRIDDNQVLHGDWLVVTRRKKTPIQHSLNASKSV 372
I+ +D + HG+W P+ NA+ +
Sbjct: 295 LEDISSDNDRNMFHGEWTCDEDLLYNPVPSFANATGDI 332
>At2g19100 putative non-LTR retroelement reverse transcriptase
Length = 1447
Score = 48.5 bits (114), Expect = 8e-06
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 8/188 (4%)
Query: 45 IPIREKENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLG-KSLGYN 103
+ + +K ++K V E++ K+ + + F WKD+L+ K K+
Sbjct: 67 VKVAKKHVFTKQKFVVSEVDGKE----KVVVPKEVFAGAKPIWKDSLIGKFFNTKAPHVG 122
Query: 104 TMKDRLQKIWKL---QGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHW 160
+ + KIW++ D+ + + + + +V+ G W I D + ++ W
Sbjct: 123 KIHMIVNKIWRIGDKSALIDVYEVNATTVKFRIRNEVMRNRVLNRGMWNIMDIPMIMSKW 182
Query: 161 TPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFAR 220
TP + +W+ + + + L ++SA+G+PI + T A+
Sbjct: 183 TPFTEDMQPALKSIPLWITLSNIPPTLFTDKGLEFLSSAVGKPIHLHPKTEACVSFDEAQ 242
Query: 221 VCVEIDLT 228
+ VE DLT
Sbjct: 243 ILVEADLT 250
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 47.8 bits (112), Expect = 1e-05
Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 8/156 (5%)
Query: 125 DNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLN 184
D G KF V+ GPW D L++ W P + K+ WV+ G+
Sbjct: 74 DKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNLSEAEMKI--IPFWVQITGIP 131
Query: 185 LVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGK---IWVNGH- 240
L++ + + + LG VD + G F RV + +L P+ + + +G
Sbjct: 132 LLFLTNAMARCVGNRLGHVADVDFDENSNHTG-FVRVRINWNLDDPLRFQRNFQFADGEN 190
Query: 241 -WYKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDP 275
K ++E L CT CG H + C DP
Sbjct: 191 TVIKFRFERLRNFCTKCGSLKHDIKVCTLSFDNEDP 226
>At2g17920 putative Ta11-like non-LTR retroelement protein
Length = 336
Score = 46.2 bits (108), Expect = 4e-05
Identities = 41/168 (24%), Positives = 66/168 (38%), Gaps = 9/168 (5%)
Query: 109 LQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPN 168
L + W L D+ + F D V PWL + +A W P +P
Sbjct: 58 LPRAWGLTAHVHGRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQP---APA 114
Query: 169 AKVDRTV-VWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDL 227
T+ +WV+ G+ +Y E L +A +G I +D + + + RV V + +
Sbjct: 115 LNFVTTIDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 228 T--VPVVGKIWVNGH---WYKVQYEGLHLICTNCGCYGHLGRNCMEKP 270
T + +I + QYE L IC+NC + H C +P
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCPYRP 222
>At4g04660
Length = 380
Score = 45.8 bits (107), Expect = 5e-05
Identities = 49/214 (22%), Positives = 88/214 (40%), Gaps = 12/214 (5%)
Query: 71 PKIYIEPQTFQELCTPWKDALVVKLLG-KSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFF 129
P ++I T+ + + + +L+V+ L +S N + L ++W L + F
Sbjct: 19 PALFIPHATYATVESRNRLSLIVRPLNPRSQNLNVVVAALPRVWDLTSRVHGRVINATFV 78
Query: 130 MVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYD 189
F D V+ PWL + W A + +WV+ G+ L+Y
Sbjct: 79 QFLFQFEVDLLSVLRREPWLYNSWFVTAHRWEVNMAFEY--LSNIDLWVQMFGIPLLYVC 136
Query: 190 ESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLT--VPVVGKIWVNG---HWYKV 244
E ++ +A LG I +D + + + RV + D+T + +I + +
Sbjct: 137 EENVVEIAHGLGEIISLDFHDATTTQIAYIRVRIRFDITDCIRFFQRITFDSGETALIRF 196
Query: 245 QYEGLHLICTNCGCYGHLGRNC-MEKPSTFDPRS 277
QYE L IC++C H C ++P +PRS
Sbjct: 197 QYERLRRICSSCFRLTHHRNFCPYQQP---EPRS 227
>At2g41590 putative Ta11-like non-LTR retroelement protein
Length = 367
Score = 45.1 bits (105), Expect = 9e-05
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 7/173 (4%)
Query: 103 NTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTP 162
N++ L + W L D + F D V PWL + +A T W
Sbjct: 52 NSVVVALPRTWGLTNQVHGRILDATYVQFLFQNEIDLMMVQRKEPWLFNNWFVAATRW-- 109
Query: 163 EFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVC 222
E A + V +WV+ G+ L Y E ++ +A LG + +D + + + RV
Sbjct: 110 EVAPAHNFVTTIDLWVQIRGIPLPYVSEETVMEIAQDLGEVLMLDYHDTTSIQIAYIRVR 169
Query: 223 VEIDLTVPV---VGKIWVNGHWYKV--QYEGLHLICTNCGCYGHLGRNCMEKP 270
V +T + ++ +G + QYE L IC++C + H C +P
Sbjct: 170 VRFGITDRLRFFQRIVFDSGETATIRFQYERLRRICSSCFRFTHNRAYCPYRP 222
>At3g31430 hypothetical protein
Length = 336
Score = 43.9 bits (102), Expect = 2e-04
Identities = 38/160 (23%), Positives = 63/160 (38%), Gaps = 13/160 (8%)
Query: 109 LQKIWKLQGGFD--IMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFAS 166
+ +IW G IM+ F+ +++ E V+ GPW D + + W P+
Sbjct: 153 MPRIWGQSGLVHGRIMEGRQFHFIFTLEESL--ETVLRRGPWAFNDWMILLQRWEPQIPL 210
Query: 167 PNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEID 226
WV+ G+ + + + + ALG+ + D N V R FARV + D
Sbjct: 211 ----FPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWD 266
Query: 227 LTVPVVGKIWVN-----GHWYKVQYEGLHLICTNCGCYGH 261
+T P+ + + +YE L C CG H
Sbjct: 267 ITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTH 306
>At5g25200 putative protein
Length = 367
Score = 43.5 bits (101), Expect = 3e-04
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 147 PWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKV 206
PWL + +A T W + A + V +WV+ G+ L Y E +L +A LG I +
Sbjct: 96 PWLFNNWFVAATRW--QVAPAHNLVTTIDLWVQIRGIPLPYVSEETVLEIAQDLGEIISL 153
Query: 207 DTNTLKVERGKFARVCVEIDLTVPV---VGKIWVNGHWYKV--QYEGLHLICTNCGCYGH 261
D + + F RV V +T + I+ +G + QYE L +C++C + H
Sbjct: 154 DFHEATSPQIAFIRVRVRFGITDRLRFFQRIIFDSGETATIRFQYERLRRLCSSCFRFTH 213
Query: 262 LGRNC 266
C
Sbjct: 214 NRAYC 218
>At2g41570 putative Ta11-like non-LTR retroelement protein
Length = 418
Score = 42.7 bits (99), Expect = 5e-04
Identities = 28/123 (22%), Positives = 55/123 (43%), Gaps = 2/123 (1%)
Query: 109 LQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPN 168
+ +IW+L + F F D +++ G W + C+ + W + S
Sbjct: 57 MPRIWRLYSRVRGVALSQERFQFFFKSEDDLLEILKTGVWTQDEWCVVMERWIEK--STE 114
Query: 169 AKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLT 228
+ VW+R + + YY + + +AS +G+ +KV+ + K + + RV V ID+
Sbjct: 115 EYLMFLPVWMRLRNIPVNYYTQDTIKKIASCVGKVLKVELDLEKSQAQDYIRVQVIIDVR 174
Query: 229 VPV 231
P+
Sbjct: 175 NPL 177
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,791,147
Number of Sequences: 26719
Number of extensions: 593043
Number of successful extensions: 2300
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2206
Number of HSP's gapped (non-prelim): 118
length of query: 504
length of database: 11,318,596
effective HSP length: 104
effective length of query: 400
effective length of database: 8,539,820
effective search space: 3415928000
effective search space used: 3415928000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140549.12