BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140068.13 + phase: 0
(233 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06960 putative spliceosomal protein U2B 349 6e-97
At2g30260 putative small nuclear ribonucleoprotein U2B 340 5e-94
At2g47580 small nuclear ribonucleoprotein U1A 256 9e-69
At3g13700 hypothetical protein 51 5e-07
At1g71770 polyadenylate-binding protein 5 49 2e-06
At2g36660 putative poly(A) binding protein 47 1e-05
At1g49760 Putative Poly-A Binding Protein (F14J22.3) 45 3e-05
At3g61860 ARGININE/SERINE-RICH SPLICING FACTOR RSP31 45 3e-05
At3g53460 RNA-binding protein cp29 protein 44 6e-05
At3g16380 putative poly(A) binding protein 44 6e-05
At1g11650 putative DNA binding protein 44 6e-05
At4g34110 poly(A)-binding protein 44 7e-05
At5g19350 DNA binding protein ACBF - like 43 1e-04
At5g61960 Mei2-like protein 42 3e-04
At5g12190 unknown protein 42 3e-04
At1g09230 unknown protein 42 3e-04
At4g12630 putative protein 42 4e-04
At1g22760 putative polyA-binding protein, PAB3 41 6e-04
At3g08000 RNA-binding protein like 39 0.002
At1g09140 SF2/ASF splicing modulator, Srp30 like protein 39 0.002
>At1g06960 putative spliceosomal protein U2B
Length = 228
Score = 349 bits (896), Expect = 6e-97
Identities = 168/233 (72%), Positives = 202/233 (86%), Gaps = 5/233 (2%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPNQ+IYIK++NEKIKK+ELKRSLYCLFSQ+GR+LD++ALKTPKLRGQAWV F+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + K EGSFVP+EKK KQEEK E+K++A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
+E++Q ++PNG T + G F+P Q+ PNNILFI NLP ET ML++LFE
Sbjct: 121 EETQQPSMPNGAT---TQNGMPPPFQP--SGQDTMPPNNILFIHNLPIETNSMMLQLLFE 175
Query: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
QYPGFKE+R+IEAKPGIAFV++EDD QSSMAMQALQGFKITPQNPM+++FAKK
Sbjct: 176 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228
>At2g30260 putative small nuclear ribonucleoprotein U2B
Length = 232
Score = 340 bits (871), Expect = 5e-94
Identities = 164/234 (70%), Positives = 200/234 (85%), Gaps = 3/234 (1%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPNQ+IYI+NLNE+IKK+ELKRSLYCLFSQ+GRILD++ALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AK EG+FVP++KK+KQEEK E+K+
Sbjct: 61 EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120
Query: 121 DESKQSA-VPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLF 179
+ +A P+ A+NG SF+P QE PNNILFI+NLP+ETT ML++LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQP--SGQETMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 180 EQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
EQYPGFKE+R+I+AKPGIAFV++EDD Q+S+AMQ LQGFKITPQNPM+I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>At2g47580 small nuclear ribonucleoprotein U1A
Length = 250
Score = 256 bits (653), Expect = 9e-69
Identities = 136/239 (56%), Positives = 174/239 (71%), Gaps = 11/239 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
++ PNQTIYI NLNEK+K DELK+SL +FSQ+G+IL+I+A KT K +GQAWV F +
Sbjct: 13 EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYAD--- 121
AS A+ +M NFPFY+K MRIQYAKTKSD +AK +G+FVPREK+K+ EEK KK D
Sbjct: 73 ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132
Query: 122 ESKQSAVPNG----GTHGASNGGSTASFRPG---SGAQEAAAPNNILFIENLPYETTGRM 174
+S Q +P G +GA+ S + G + + A PNNILF++NLP+ETT +
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192
Query: 175 LEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
L+MLF QY GFKEVR+IEAKPGIAFV+F D+ QS++AMQ LQGFKI QN M+I +AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250
>At3g13700 hypothetical protein
Length = 296
Score = 51.2 bits (121), Expect = 5e-07
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 89 TKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVPNGGTHGASNGGSTASFRPG 148
+KS +EG P E ++ + K+ +S+ + P+ A NG + G
Sbjct: 158 SKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSA-NGHLEKASEGG 216
Query: 149 SGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--IAFVDFEDDG 206
SGA+ + LFI NL T L+ L +YPGF ++ I A+ G +AF DFE+
Sbjct: 217 SGARACST----LFIANLGPNCTEDELKQLLSRYPGFHILK-IRARGGMPVAFADFEEIE 271
Query: 207 QSSMAMQALQG 217
Q++ AM LQG
Sbjct: 272 QATDAMNHLQG 282
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/86 (26%), Positives = 31/86 (35%), Gaps = 21/86 (24%)
Query: 159 NILFIENLPYETTGRMLEMLFEQYPGFKEVRL---------------------IEAKPGI 197
N LF+ LP + R + LF + GF+ +L I K +
Sbjct: 37 NTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVV 96
Query: 198 AFVDFEDDGQSSMAMQALQGFKITPQ 223
AF F + AM L G K PQ
Sbjct: 97 AFATFTSHRFALAAMNELNGVKFDPQ 122
>At1g71770 polyadenylate-binding protein 5
Length = 668
Score = 48.9 bits (115), Expect = 2e-06
Identities = 50/237 (21%), Positives = 97/237 (40%), Gaps = 55/237 (23%)
Query: 3 SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALK--TPKLRGQAWVCFS 60
SG +P +Y+KNL ++I DELK++ F +YG I + +K + R +V F
Sbjct: 218 SGAVPSFTNVYVKNLPKEITDDELKKT----FGKYGDISSAVVMKDQSGNSRSFGFVNFV 273
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
AA+ AV +M E + +V R +KK E+ ++K+
Sbjct: 274 SPEAAAVAVEKMNGISLGEDVL------------------YVGRAQKKSDREEELRRKFE 315
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
E + F G+ L+++NL L+ +F
Sbjct: 316 QE------------------RISRFEKLQGSN--------LYLKNLDDSVNDEKLKEMFS 349
Query: 181 QYPGFKEVRLIEAKPGIA----FVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
+Y +++ G++ FV + + ++ +AM+ + G K+ + P+ + A++
Sbjct: 350 EYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG-KMIGRKPLYVALAQR 405
Score = 37.0 bits (84), Expect = 0.009
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPK--LRGQAWVCFSEVTAASNAV 69
+Y+KNL++ + ++LK +FS+YG + + + RG +V +S A A+
Sbjct: 330 LYLKNLDDSVNDEKLKE----MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 385
Query: 70 RQMQNFPFYEKPMRIQYAKTKSD 92
++M KP+ + A+ K +
Sbjct: 386 KEMNGKMIGRKPLYVALAQRKEE 408
>At2g36660 putative poly(A) binding protein
Length = 609
Score = 46.6 bits (109), Expect = 1e-05
Identities = 31/105 (29%), Positives = 53/105 (49%), Gaps = 6/105 (5%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILD--IIALKTPKLRGQAWVCFSEVTAASNAV 69
IY+KN+N + ++EL++ FSQ G I ++ + K +G +VCFS A +AV
Sbjct: 306 IYVKNVNVAVTEEELRKH----FSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAV 361
Query: 70 RQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKA 114
+ F+ KP+ + A+ K D + + F R + +K A
Sbjct: 362 KTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSA 406
>At1g49760 Putative Poly-A Binding Protein (F14J22.3)
Length = 671
Score = 45.4 bits (106), Expect = 3e-05
Identities = 27/101 (26%), Positives = 47/101 (45%), Gaps = 6/101 (5%)
Query: 3 SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPK--LRGQAWVCFS 60
+ D +Y+KNL+E + D+L+ F+ +G I ++ P RG +V FS
Sbjct: 320 AADKSQGSNLYVKNLDESVTDDKLREH----FAPFGTITSCKVMRDPSGVSRGSGFVAFS 375
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSF 101
A+ A+ +M KP+ + A+ K D A+ + F
Sbjct: 376 TPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQF 416
Score = 39.3 bits (90), Expect = 0.002
Identities = 45/237 (18%), Positives = 92/237 (37%), Gaps = 55/237 (23%)
Query: 3 SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTP--KLRGQAWVCFS 60
SG+ +Y+KNL+E + +EL + +F ++G + ++ K +G +V F
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNK----VFGEFGVTTSCVIMRDGEGKSKGFGFVNFE 272
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
A+ AV + F +K FV + +KK + E K+K+
Sbjct: 273 NSDDAARAVDALNGKTFDDKEW------------------FVGKAQKKSERETELKQKFE 314
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
K++A + G++ L+++NL T L F
Sbjct: 315 QSLKEAADKSQGSN--------------------------LYVKNLDESVTDDKLREHFA 348
Query: 181 QYPGFKEVRLIEAKPGIA----FVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
+ +++ G++ FV F +++ A+ + G K+ P+ + A++
Sbjct: 349 PFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNG-KMIVTKPLYVALAQR 404
>At3g61860 ARGININE/SERINE-RICH SPLICING FACTOR RSP31
Length = 264
Score = 45.1 bits (105), Expect = 3e-05
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 66/212 (31%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQ 71
+++ N + ++ +L+R LF +YGR+ D + +K+ G A+V F + A +A+R+
Sbjct: 4 VFVGNFEYETRQSDLER----LFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRK 54
Query: 72 MQNFPF-YEK-PMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVP 129
+ NFPF YEK + +++AK E G P
Sbjct: 55 LDNFPFGYEKRRLSVEWAK-------GERGR----------------------------P 79
Query: 130 NGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENL-PYETTGRMLEMLFEQYPGFKEV 188
G SN P LF+ N P T +E FE Y V
Sbjct: 80 RGDAKAPSN----------------LKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNV 123
Query: 189 RLIEAKPGIAFVDFEDDGQSSMAMQALQGFKI 220
R+ + +FV FE ++ A++A Q KI
Sbjct: 124 RI---RRNFSFVQFETQEDATKALEATQRSKI 152
>At3g53460 RNA-binding protein cp29 protein
Length = 342
Score = 44.3 bits (103), Expect = 6e-05
Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 30/232 (12%)
Query: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI--LDIIALK-TPKLRGQAWVCFSEVTA 64
P+ +++ NL+ + +L + LF G + +++I K T + RG +V S
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQ----LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAE 152
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
A +Q + F +P+R+ K E SF + + ++
Sbjct: 153 VEAAAQQFNGYEFEGRPLRVNAGPPPP----KREESFSRGPRSGGYGSERGGGYGSERGG 208
Query: 125 QSAVPNGGTHGASNGG--------------STASFRPGSGAQEAAAPNNILFIENLPYET 170
GG +G+ GG +S+ GSG+ + N L++ NL +
Sbjct: 209 GYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGV 268
Query: 171 TGRMLEMLFEQYPGFKEVRLIEAK-----PGIAFVDFEDDGQSSMAMQALQG 217
LE LF + E R+I + G FV + A+ +L G
Sbjct: 269 DDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 320
>At3g16380 putative poly(A) binding protein
Length = 537
Score = 44.3 bits (103), Expect = 6e-05
Identities = 27/105 (25%), Positives = 53/105 (49%), Gaps = 6/105 (5%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILD--IIALKTPKLRGQAWVCFSEVTAASNAV 69
+Y+KNL+E + + L+ +F YG+I+ ++ + + +G +VCFS + A
Sbjct: 306 LYVKNLSESMNETRLRE----IFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAK 361
Query: 70 RQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKA 114
R + F KP+ ++ A+ K D I + + F + ++ Q A
Sbjct: 362 RYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAPSA 406
Score = 37.0 bits (84), Expect = 0.009
Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 62/231 (26%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALK--TPKLRGQAWVCFSEVTAASNAV 69
+Y+KNL E + D L+ LFSQYG + ++ ++ + RG +V F A A+
Sbjct: 204 VYVKNLIETVTDD----CLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAM 259
Query: 70 RQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVP 129
+ K + FV + KK + + K+K++D
Sbjct: 260 ESLCGLQLGSKKL------------------FVGKALKKDERREMLKQKFSDNF------ 295
Query: 130 NGGTHGASNGGSTASFRPGSGAQEAAAPN---NILFIENLPYETTGRMLEMLFEQYPGFK 186
A PN + L+++NL L +F Y
Sbjct: 296 ------------------------IAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIV 331
Query: 187 EVRLI----EAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
+++ G FV F + +S A + L GF + P+++ A++
Sbjct: 332 SAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGF-LVDGKPIVVRVAER 381
Score = 32.0 bits (71), Expect = 0.29
Identities = 48/223 (21%), Positives = 82/223 (36%), Gaps = 37/223 (16%)
Query: 48 TPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAK------------------- 88
T K A++ F +ASNA+ ++ + K MRI +++
Sbjct: 58 TGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVK 117
Query: 89 -----TKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA---DESKQSAV-PNGGTHGASNG 139
S C+ + F K EE + K + +++QSAV HG+
Sbjct: 118 NLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVY 177
Query: 140 GSTASFRPGSGAQEAAA-----PNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIE-- 192
G E AA + ++++NL T L LF QY V ++
Sbjct: 178 GKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG 237
Query: 193 --AKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
G FV+F + + AM++L G ++ + + KK
Sbjct: 238 MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKK 280
>At1g11650 putative DNA binding protein
Length = 405
Score = 44.3 bits (103), Expect = 6e-05
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAAS 66
P N T+++ L+ + D LK +FSQYG +I+ +K P + +V FSE + A
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKN----VFSQYG---EIVHVKIPAGKRCGFVQFSEKSCAE 310
Query: 67 NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQS 126
A+R + +R+ + ++ S+ + + F + QE+ Y Q
Sbjct: 311 EALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQ------YGYTMPQD 364
Query: 127 AVPNGGTHGASNGGSTASFR--PGSGAQEAAAP 157
PN G S GG + ++ P +G Q P
Sbjct: 365 --PNAYYGGYSGGGYSGGYQQTPQAGQQPPQQP 395
Score = 33.1 bits (74), Expect = 0.13
Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 44/216 (20%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
D P+ TI++ +L + L + + +I T + +G +V FS+ +
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
A+ +M P +PMRI A +K + +
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRD-------------------------- 243
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
++ +S G T P N +F+ L T L+ +F QY
Sbjct: 244 --------SYQSSAAGVTTDNDPN---------NTTVFVGGLDASVTDDHLKNVFSQYGE 286
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKI 220
V+ I A FV F + + A++ L G ++
Sbjct: 287 IVHVK-IPAGKRCGFVQFSEKSCAEEALRMLNGVQL 321
>At4g34110 poly(A)-binding protein
Length = 629
Score = 43.9 bits (102), Expect = 7e-05
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 55/228 (24%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALK--TPKLRGQAWVCFSEVTAASNAV 69
+Y+KNL E D+LK + F +YG+I + +K K +G +V F A+ AV
Sbjct: 217 VYVKNLAESTTDDDLKNA----FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272
Query: 70 RQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVP 129
+ F +K +V R +KK + E + +Y K++A
Sbjct: 273 ESLNGHKFDDKEW------------------YVGRAQKKSERETELRVRYEQNLKEAA-- 312
Query: 130 NGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVR 189
+SN L+++NL + L+ +F + +
Sbjct: 313 --DKFQSSN----------------------LYVKNLDPSISDEKLKEIFSPFGTVTSSK 348
Query: 190 LIE----AKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
++ G FV F +++ AM L G K+ P+ + A++
Sbjct: 349 VMRDPNGTSKGSGFVAFATPEEATEAMSQLSG-KMIESKPLYVAIAQR 395
Score = 42.0 bits (97), Expect = 3e-04
Identities = 50/251 (19%), Positives = 97/251 (37%), Gaps = 46/251 (18%)
Query: 9 NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIA---LKTPKLRGQAWVCFSEVTAA 65
N ++Y+ +L+ + +L + F Q G ++ + L T + G +V F+ A
Sbjct: 35 NTSLYVGDLDFNVTDSQL----FDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 90
Query: 66 SNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKA----------- 114
+ A++++ P Y KP+R+ Y+ G+ + + + KA
Sbjct: 91 ARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNI 150
Query: 115 -----------EKKKYA------DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAP 157
+ K Y +ES Q A+ +G P QE +
Sbjct: 151 VSCKVAVDSSGQSKGYGFVQYANEESAQKAIEK--LNGMLLNDKQVYVGPFLRRQERDST 208
Query: 158 NN-----ILFIENLPYETTGRMLEMLFEQYPGFKEVRLIE----AKPGIAFVDFEDDGQS 208
N ++++NL TT L+ F +Y +++ G FV+FE+ +
Sbjct: 209 ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDA 268
Query: 209 SMAMQALQGFK 219
+ A+++L G K
Sbjct: 269 ARAVESLNGHK 279
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 9 NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPK--LRGQAWVCFSEVTAAS 66
+ +Y+KNL+ I ++LK +FS +G + ++ P +G +V F+ A+
Sbjct: 317 SSNLYVKNLDPSISDEKLKE----IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEAT 372
Query: 67 NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSF 101
A+ Q+ KP+ + A+ K D + + F
Sbjct: 373 EAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQF 407
>At5g19350 DNA binding protein ACBF - like
Length = 425
Score = 43.1 bits (100), Expect = 1e-04
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 11 TIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVR 70
TI + NL++ + ++ELK++ FSQ G ++I +K P +G +V F +A AV+
Sbjct: 238 TISVANLDQNVTEEELKKA----FSQLG---EVIYVKIPATKGYGYVQFKTRPSAEEAVQ 290
Query: 71 QMQNFPFYEKPMRIQYAK 88
+MQ ++ +RI ++K
Sbjct: 291 RMQGQVIGQQAVRISWSK 308
Score = 31.6 bits (70), Expect = 0.38
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 143 ASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE-QYPGFKEVRLIE-----AKPG 196
ASF GSG + A P++ +F+ +L + T +L+ F Y + +++ G
Sbjct: 102 ASF--GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKG 159
Query: 197 IAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFA 231
FV F ++ + + AM + G + + PM I+ A
Sbjct: 160 YGFVKFAEESERNRAMAEMNGLYCSTR-PMRISAA 193
Score = 31.2 bits (69), Expect = 0.49
Identities = 45/228 (19%), Positives = 86/228 (36%), Gaps = 30/228 (13%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
D P+ +I++ +L + L+ + +S + T + +G +V F+E +
Sbjct: 111 DAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESE 170
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
+ A+ +M +PMRI A P++ Q++ K Y
Sbjct: 171 RNRAMAEMNGLYCSTRPMRISAA--------------TPKKNVGVQQQYVTKAVY----- 211
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
VP+ A + E+ + + NL T L+ F Q
Sbjct: 212 PVTVPS---------AVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGE 262
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAK 232
V+ I A G +V F+ + A+Q +QG ++ Q + I+++K
Sbjct: 263 VIYVK-IPATKGYGYVQFKTRPSAEEAVQRMQG-QVIGQQAVRISWSK 308
>At5g61960 Mei2-like protein
Length = 915
Score = 42.0 bits (97), Expect = 3e-04
Identities = 30/91 (32%), Positives = 49/91 (52%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTP-KLRGQAWVCFSEVTAAS 66
P++T+ + N++ ++ ELK LF Q+G DI AL T K RG V + ++ AA
Sbjct: 215 PSRTLLVGNISSNVEDYELK----VLFEQFG---DIQALHTACKNRGFIMVSYCDIRAAQ 267
Query: 67 NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKE 97
NA R +QN + I+Y+ +K + K+
Sbjct: 268 NAARALQNKLLRGTKLDIRYSISKENPSQKD 298
>At5g12190 unknown protein
Length = 124
Score = 42.0 bits (97), Expect = 3e-04
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 158 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRL--IEAKPGIAFVDFEDDGQSSMAMQAL 215
N +L++ NLP+ T + +F +Y +++R+ +A G AFV +ED + A+ L
Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHL 77
Query: 216 QGFKITPQNPMIINF 230
GF + + +++ +
Sbjct: 78 SGFNVANRYLIVLYY 92
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/121 (26%), Positives = 56/121 (45%), Gaps = 13/121 (10%)
Query: 6 IPP--NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVT 63
+PP N+ +Y++NL I +E+ Y +F +YG I I +G A+V + ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADES 123
A NAV + F + + + Y + AK F +KK + E ++KY +
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLYYQH-----AKMSKKF--DQKKSEDEITKLQEKYGVST 121
Query: 124 K 124
K
Sbjct: 122 K 122
>At1g09230 unknown protein
Length = 442
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 9/88 (10%)
Query: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI------LDIIALKTPKLRGQAWVCFSE 61
P+ +YIKNL + + D+ Y SQ+ L + ++ ++RGQA++ F
Sbjct: 350 PSVVLYIKNLAKDVVIDDF---YYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPS 406
Query: 62 VTAASNAVRQMQNFPFYEKPMRIQYAKT 89
V A A+ + F F KPM IQ+ +T
Sbjct: 407 VEVAHRALNLVNGFVFKGKPMIIQFGRT 434
Score = 38.1 bits (87), Expect = 0.004
Identities = 39/141 (27%), Positives = 58/141 (40%), Gaps = 24/141 (17%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAAS 66
P T+ +++L + I D + R LFSQYG + KLR A+V F AS
Sbjct: 25 PFGVTLLVRHLPDGIPHDIVSR----LFSQYGASA-VRPCSGGKLRNAAFVDFKNEAFAS 79
Query: 67 NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQS 126
A RQ+ F K +++Q A +D KK +Q E++ +K +
Sbjct: 80 QAHRQLNGLRFLGKVLQVQRANKPND------------NKKSRQIEES-------VTKGN 120
Query: 127 AVPNGGTHGASNGGSTASFRP 147
A T+ S G S P
Sbjct: 121 AFSTVSTNNDSKSGQILSGEP 141
>At4g12630 putative protein
Length = 109
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 157 PNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--IAFVDFEDDGQSSMAMQA 214
P+ L++ NLP+ G + L +++ F E+ + +PG AFV+F D + A+++
Sbjct: 13 PSRHLWVGNLPH---GILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIES 69
Query: 215 LQGFKITPQNPMIINFAK 232
LQGF ++ NP+ I FAK
Sbjct: 70 LQGFPLS-GNPLRIEFAK 86
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/88 (31%), Positives = 46/88 (51%), Gaps = 7/88 (7%)
Query: 4 GDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVT 63
G PP++ +++ NL I L+R L F ++G L+ +A + R A+V F+
Sbjct: 9 GRNPPSRHLWVGNLPHGI----LERELADRFLRFGE-LESLAFQPG--RSYAFVNFNHDE 61
Query: 64 AASNAVRQMQNFPFYEKPMRIQYAKTKS 91
A A+ +Q FP P+RI++AK S
Sbjct: 62 DAFAAIESLQGFPLSGNPLRIEFAKAVS 89
>At1g22760 putative polyA-binding protein, PAB3
Length = 660
Score = 40.8 bits (94), Expect = 6e-04
Identities = 24/83 (28%), Positives = 42/83 (49%), Gaps = 6/83 (7%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPK--LRGQAWVCFSEVTAASNAV 69
+Y+KNL++ + ++LK +FS+YG + + P+ RG +V +S A A+
Sbjct: 334 LYLKNLDDSVDDEKLKE----MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRAL 389
Query: 70 RQMQNFPFYEKPMRIQYAKTKSD 92
+M KP+ I A+ K D
Sbjct: 390 SEMNGKMIGRKPLYIALAQRKED 412
Score = 37.7 bits (86), Expect = 0.005
Identities = 45/233 (19%), Positives = 92/233 (39%), Gaps = 55/233 (23%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALK--TPKLRGQAWVCFSEVTA 64
P +Y+KNL ++I +DEL+++ F ++G I + ++ + R +V F A
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKT----FGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
A++AV +M + + +V R +KK + E+ ++K+ E
Sbjct: 282 AASAVEKMNGISLGDDVL------------------YVGRAQKKSEREEELRRKFEQE-- 321
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
F GA L+++NL L+ +F +Y
Sbjct: 322 ----------------RINRFEKSQGAN--------LYLKNLDDSVDDEKLKEMFSEYGN 357
Query: 185 FKEVRLI----EAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
+++ G FV + + ++ A+ + G K+ + P+ I A++
Sbjct: 358 VTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNG-KMIGRKPLYIALAQR 409
>At3g08000 RNA-binding protein like
Length = 143
Score = 38.9 bits (89), Expect = 0.002
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 126 SAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGF 185
SA+P H S S+ F P +A+P++ LFI L + + L+ F +
Sbjct: 14 SAIPQ---HSIS---SSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEV 67
Query: 186 KEVRLIEAK-----PGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFA 231
EVR+ K G FVDF ++G + A A+ G K P+ I+FA
Sbjct: 68 AEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDG-KGLLGRPLRISFA 117
Score = 30.4 bits (67), Expect = 0.84
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 3 SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDI-IALK--TPKLRGQAWVCF 59
S P+ ++I L+ + + LK + FS +G + ++ IA + + RG +V F
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDA----FSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Query: 60 SEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEK 113
+E A +A M +P+RI +A + + VPR K K+E +
Sbjct: 90 AEEGDALSAKDAMDGKGLLGRPLRISFALER----VRGGPVVVPRLGKSKRERE 139
>At1g09140 SF2/ASF splicing modulator, Srp30 like protein
Length = 253
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/79 (32%), Positives = 42/79 (52%), Gaps = 4/79 (5%)
Query: 9 NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNA 68
N+TIY+ NL I+K E++ LF +YG I+DI P+ G A+V F + A +A
Sbjct: 6 NRTIYVGNLPGDIRKCEVED----LFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDA 61
Query: 69 VRQMQNFPFYEKPMRIQYA 87
+ + F +R++ A
Sbjct: 62 IYGRDGYDFDGCRLRVEIA 80
Score = 32.3 bits (72), Expect = 0.22
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 158 NNILFIENLPYETTGRMLEMLFEQYPGFKEV--RLIEAKPGIAFVDFEDDGQSSMAMQAL 215
N +++ NLP + +E LF +Y ++ ++ PG AFV+FED + A+
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 216 QGF 218
G+
Sbjct: 66 DGY 68
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,372,087
Number of Sequences: 26719
Number of extensions: 233718
Number of successful extensions: 2094
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1823
Number of HSP's gapped (non-prelim): 299
length of query: 233
length of database: 11,318,596
effective HSP length: 96
effective length of query: 137
effective length of database: 8,753,572
effective search space: 1199239364
effective search space used: 1199239364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC140068.13