BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140030.9 - phase: 0 /pseudo
(113 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18820 putative protein 27 1.3
At4g14680 ATP-sulfurylase 27 1.3
At3g04660 hypothetical protein 27 1.3
At4g38460 geranylgeranyl pyrophosphate synthase-related protein 27 1.7
At3g22890 ATP sulfurylase like protein 27 1.7
At2g39220 similar to latex allergen from Hevea brasiliensis 27 1.7
At2g21370 xylulose kinase like protein 27 1.7
At3g16350 putative MYB family transcription factor 27 2.2
At4g17300 asparagine--tRNA ligase 26 2.8
At1g20990 hypothetical protein 26 2.8
At4g25910 nitrogen fixation like protein 26 3.7
At2g36110 hypothetical protein 26 3.7
At1g63930 hypothetical protein 26 3.7
At1g04190 unknown protein 26 3.7
At5g43610 sucrose transporter protein 25 4.8
At1g22710 putative sucrose transport protein, SUC2 25 4.8
At3g14900 hypothetical protein 25 6.3
At3g13227 unknown protein 25 6.3
At5g35660 unknown protein 25 8.2
At5g06810 putative protein 25 8.2
>At4g18820 putative protein
Length = 1057
Score = 27.3 bits (59), Expect = 1.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 45 DAVVDSITD-----VVGGDHRVLKILMEELKRKGGGSGGGN 80
DA+V +++D VVG V+ + R GGG GGGN
Sbjct: 195 DAMVKTLSDQLNEVVVGDSDDVVSSNVRPRVRYGGGGGGGN 235
>At4g14680 ATP-sulfurylase
Length = 465
Score = 27.3 bits (59), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 4/37 (10%)
Query: 31 ERCMKRWGRRIPALDAVVDSITD----VVGGDHRVLK 63
ER + WG P L V ++IT+ ++GGD VL+
Sbjct: 179 ERIARTWGTTAPGLPYVEEAITNAGDWLIGGDLEVLE 215
>At3g04660 hypothetical protein
Length = 390
Score = 27.3 bits (59), Expect = 1.3
Identities = 11/17 (64%), Positives = 14/17 (81%)
Query: 46 AVVDSITDVVGGDHRVL 62
A+V SITD+VG D RV+
Sbjct: 308 AIVPSITDIVGNDQRVI 324
>At4g38460 geranylgeranyl pyrophosphate synthase-related protein
Length = 326
Score = 26.9 bits (58), Expect = 1.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 34 MKRWGRRIPALDAVVDSITD-----VVGGDHRVLKILMEELKRK 72
++R+GR + L VVD IT+ GG + + + EELK K
Sbjct: 246 LRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKGMMEMAEELKEK 289
>At3g22890 ATP sulfurylase like protein
Length = 463
Score = 26.9 bits (58), Expect = 1.7
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 4/37 (10%)
Query: 31 ERCMKRWGRRIPALDAVVDSITD----VVGGDHRVLK 63
ER + WG P L V ++IT+ ++GGD VL+
Sbjct: 177 ERIARTWGTTAPGLPYVDEAITNAGNWLIGGDLEVLE 213
>At2g39220 similar to latex allergen from Hevea brasiliensis
Length = 499
Score = 26.9 bits (58), Expect = 1.7
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Query: 64 ILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLELC 110
IL +K GGSGG ++EK K E + ++ K ++ +L C
Sbjct: 200 ILNRVMKTGSGGSGGSGSKLEKAMK---ESFEELTLKDTLKPVLIPC 243
>At2g21370 xylulose kinase like protein
Length = 478
Score = 26.9 bits (58), Expect = 1.7
Identities = 21/73 (28%), Positives = 36/73 (48%), Gaps = 9/73 (12%)
Query: 32 RCMKRWGRRIPALDAVVDSITDVVGGDHRVLKIL----MEELKRKGGGSGGGNLEMEKVF 87
R + R + L +++SI + G +++LK L EE+ GGG+ + +K
Sbjct: 387 RLLPRPESDVEFLHGILESIARIEGKGYKLLKELGATEAEEVLTAGGGA-----KNDKWI 441
Query: 88 KLAREVYGKVVKK 100
K+ + V G VKK
Sbjct: 442 KIRQRVLGLPVKK 454
>At3g16350 putative MYB family transcription factor
Length = 387
Score = 26.6 bits (57), Expect = 2.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 73 GGGSGGGNLEMEKVFKLAREVYGKVVKKQA-MRTLLELCIAA 113
GGG G G+ K+F + R G ++KK A M L L +AA
Sbjct: 36 GGGGGSGSSSAVKLFGV-RLTDGSIIKKSASMGNLSALAVAA 76
>At4g17300 asparagine--tRNA ligase
Length = 567
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 38 GRRIPALDAVVDSITDVVGGDHR-----VLKILMEELK 70
G+ + A+D +V I +++GG R VL+ ++ELK
Sbjct: 475 GKTVAAMDMLVPRIGELIGGSQREERLEVLEARLDELK 512
>At1g20990 hypothetical protein
Length = 319
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 43 ALDAVVDSITDVVGG-DHRVLKILMEELKRKGGGSGGGN 80
A V+D + ++ G V + +++ + R GGG GGGN
Sbjct: 268 ASQVVIDFLGGIIDGLGEGVGEAIIDGVTRGGGGGGGGN 306
>At4g25910 nitrogen fixation like protein
Length = 236
Score = 25.8 bits (55), Expect = 3.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 40 RIPALDAVVDSITDVVGG----DHRVLKILMEELKRKGGGSGGGNLEMEKV 86
+IP + +V + GG D + K+L EL+ G+GGG LE+ ++
Sbjct: 146 KIPEIMSVEQFLESETGGLELNDENIEKVL-SELRPYLSGTGGGGLELVEI 195
>At2g36110 hypothetical protein
Length = 239
Score = 25.8 bits (55), Expect = 3.7
Identities = 15/46 (32%), Positives = 20/46 (42%), Gaps = 7/46 (15%)
Query: 16 LRASFWSLYSEAYG-------SERCMKRWGRRIPALDAVVDSITDV 54
L +SF + E G E CM WG R + D +V + DV
Sbjct: 146 LNSSFEKIVEECLGYKGVRKDKEICMSNWGARSLSHDQIVQASDDV 191
>At1g63930 hypothetical protein
Length = 415
Score = 25.8 bits (55), Expect = 3.7
Identities = 13/43 (30%), Positives = 19/43 (43%)
Query: 67 EELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLEL 109
E + GGG GGGN E+ + R G + T+ +L
Sbjct: 182 ENVSGGGGGGGGGNKTTERSWSFGRRSGGSSAASKGGATIGQL 224
>At1g04190 unknown protein
Length = 328
Score = 25.8 bits (55), Expect = 3.7
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 10/77 (12%)
Query: 2 QMKRWKVRGKEKGYLRA---------SFWSLYSEAYGSERCMKR-WGRRIPALDAVVDSI 51
Q+++ K R +E LR+ SF S SE YG+E C K + + ++ V S
Sbjct: 128 QLQKEKQRAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSW 187
Query: 52 TDVVGGDHRVLKILMEE 68
+ D RV +L +E
Sbjct: 188 HETSKVDTRVYFLLDKE 204
>At5g43610 sucrose transporter protein
Length = 492
Score = 25.4 bits (54), Expect = 4.8
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 25 SEAYGSERCMKRWGRRIP--ALDAVVDSITDVVGG 57
S Y S+RC R+GRR P A+ A++ ++ V+ G
Sbjct: 85 SVGYFSDRCKSRFGRRRPFIAMGALLVAVAVVLIG 119
>At1g22710 putative sucrose transport protein, SUC2
Length = 512
Score = 25.4 bits (54), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 28 YGSERCMKRWGRRIPALDAVVDSITDVV 55
Y S+RC R+GRR P + A +T V
Sbjct: 87 YHSDRCTSRFGRRRPFIVAGAGLVTVAV 114
>At3g14900 hypothetical protein
Length = 611
Score = 25.0 bits (53), Expect = 6.3
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 56 GGDHRVLKILMEELKRK-GGGSGGGNLE 82
GG R ++ L K+K GGGS GG +E
Sbjct: 57 GGFRRDVRALAGRSKKKLGGGSSGGRIE 84
>At3g13227 unknown protein
Length = 111
Score = 25.0 bits (53), Expect = 6.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 71 RKGGGSGGGNLEMEK 85
R+GGG GGG++ M K
Sbjct: 43 RRGGGGGGGSVGMSK 57
>At5g35660 unknown protein
Length = 343
Score = 24.6 bits (52), Expect = 8.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 71 RKGGGSGGGNLEMEKVFKLAREV 93
R GGG GG LE E++ + E+
Sbjct: 230 RGGGGGGGAELENEEINGASEEI 252
>At5g06810 putative protein
Length = 1141
Score = 24.6 bits (52), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (72%)
Query: 77 GGGNLEMEKVFKLAREVYG 95
G G +M K+FK AREV+G
Sbjct: 734 GIGREKMGKIFKEAREVFG 752
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,665,552
Number of Sequences: 26719
Number of extensions: 111354
Number of successful extensions: 457
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 34
length of query: 113
length of database: 11,318,596
effective HSP length: 89
effective length of query: 24
effective length of database: 8,940,605
effective search space: 214574520
effective search space used: 214574520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC140030.9