BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140028.4 - phase: 2 /pseudo
         (30 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g57300 helicase-like protein                                        38  9e-04
At3g50370 putative protein                                             26  4.6
At1g56040 hypothetical protein                                         25  7.9

>At3g57300 helicase-like protein
          Length = 1507

 Score = 38.1 bits (87), Expect = 9e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 6   EVRKREEKEAAEALRRDQELREAKR 30
           E RK++EKEAAEA +R+QE RE+KR
Sbjct: 426 EERKKQEKEAAEAFKREQEQRESKR 450


>At3g50370 putative protein
          Length = 2152

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 3   LQTEVRK---REEKEAAEALRRDQELREAK 29
           L+ E R+   R E+E  EA RR +ELR++K
Sbjct: 519 LEEEAREAAFRNEQERLEATRRAEELRKSK 548


>At1g56040 hypothetical protein
          Length = 437

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (64%)

Query: 1   HSLQTEVRKREEKEAAEALRRDQ 23
           H L+ E+R R+E E   A+ RD+
Sbjct: 195 HKLEAELRHRKETETLLAIERDR 217


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.306    0.120    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,797
Number of Sequences: 26719
Number of extensions: 8361
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 4
length of query: 30
length of database: 11,318,596
effective HSP length: 6
effective length of query: 24
effective length of database: 11,158,282
effective search space: 267798768
effective search space used: 267798768
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)