BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.7 + phase: 0 /pseudo
         (672 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g23250 myb-related transcription factor like protein                33  0.40
At4g04050 putative transposon protein                                  30  4.4
At2g07550 putative retroelement pol polyprotein                        30  5.7
At1g15045 unknown protein                                              29  9.8

>At3g23250 myb-related transcription factor like protein
          Length = 285

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 20/49 (40%), Positives = 28/49 (56%), Gaps = 2/49 (4%)

Query: 616 PTKGAKKKFDIARSKGKITSTSRIPSSGEVVDSQNP--DSQWSPSPTTS 662
           P    KKK    +S+  ITS++   S  E+ DS NP  +S +S SP+TS
Sbjct: 124 PKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLFSTSPSTS 172


>At4g04050 putative transposon protein
          Length = 681

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 3/75 (4%)

Query: 7   DVPGETKQNFVENSGDVKPPNVEAKTNIDGASVHVEASKYVGGSGVLPLQPHEVDTAKFF 66
           D+P   + + + NS    P N+   +N  G+       +  GG   + +QP   D     
Sbjct: 30  DLPPGAQVDVIHNSD---PENISQNSNSSGSDKITPPPQTRGGKRNITIQPPNGDNPANL 86

Query: 67  SDDVKSKNRDELLEL 81
           S+ V+ +  +EL EL
Sbjct: 87  SNQVRPRPANELAEL 101


>At2g07550 putative retroelement pol polyprotein
          Length = 1356

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 606 TLMSPPPRKVPTKGAKKKFDIARSKGKITSTSRIPSSGEVVDSQNPDSQWSPSPTTSSYK 665
           T+M      +   G  K+F    +   +   ++ PSS   ++ + PD +WS +P   SY 
Sbjct: 608 TIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSA--LNFEIPDKKWSGNPPVYSYL 665

Query: 666 RKKG 669
           R+ G
Sbjct: 666 RRYG 669


>At1g15045 unknown protein
          Length = 333

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 24/106 (22%), Positives = 50/106 (46%), Gaps = 8/106 (7%)

Query: 7   DVPGETKQNFVENSGDVKPPNVEAKTNIDGASVHVEASKYVGGSGVLPLQPHEVDTAKFF 66
           D  GE   + + +SG V  P +  + N     +H     +    GVL  +  +VD + + 
Sbjct: 30  DFVGEYHLDLIVSSGAV--PVIVPRVN----GIHSMLQSFEPIHGVLLCEGEDVDPSLYA 83

Query: 67  SDDVKSKNRDELLELVRRQANKAGFTIVTQRSSLINPMFRLVCERS 112
            D++   + +++ E+  ++A+    TI  ++ S+   + RL  ER+
Sbjct: 84  DDELSDLSPEDMEEI--KKAHAEDMTIDREKDSIELTLARLCLERN 127


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.351    0.154    0.553 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,713,308
Number of Sequences: 26719
Number of extensions: 530227
Number of successful extensions: 2314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2314
Number of HSP's gapped (non-prelim): 4
length of query: 672
length of database: 11,318,596
effective HSP length: 106
effective length of query: 566
effective length of database: 8,486,382
effective search space: 4803292212
effective search space used: 4803292212
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 63 (28.9 bits)