BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.1 - phase: 0 /pseudo
         (406 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g33260 putative tyrosine-specific transport protein                 29  4.1
At2g25530 hypothetical protein                                         28  6.9

>At2g33260 putative tyrosine-specific transport protein
          Length = 436

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)

Query: 57  FGRGCWKINMVINVMPSLII 76
           FG+ CWK++MV+  +P +++
Sbjct: 188 FGQSCWKVSMVLPAVPVMVL 207


>At2g25530 hypothetical protein
          Length = 655

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 21/82 (25%), Positives = 37/82 (44%), Gaps = 9/82 (10%)

Query: 288 SRGMKFIARLASKSPPPRELHLVARYSEQITRHSELTSEENL---ILRINSFSRALDIFG 344
           S G+ F+AR  S S PP++       S  +T +S+L  +  L     +    S   ++FG
Sbjct: 90  SNGLHFVARSYSTSDPPKQ------PSGPLTNYSKLVEQGRLQHDPYQEKVVSAFENLFG 143

Query: 345 CLNMYKND*ASF*IEIEHWEVK 366
            L  ++     + + +  WE K
Sbjct: 144 RLEHFEKQMEDYHVRLAEWEKK 165


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.369    0.170    0.610 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,101,196
Number of Sequences: 26719
Number of extensions: 246324
Number of successful extensions: 1491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1490
Number of HSP's gapped (non-prelim): 2
length of query: 406
length of database: 11,318,596
effective HSP length: 102
effective length of query: 304
effective length of database: 8,593,258
effective search space: 2612350432
effective search space used: 2612350432
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 61 (28.1 bits)