BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139841.7 - phase: 0 
         (46 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g06740 mudrA-like protein                                           30  0.18
At5g16505 mutator-like transposase-like protein (MQK4.25)              27  2.0
At5g51280 DEAD-box protein abstrakt                                    27  2.6
At3g21040 hypothetical protein                                         27  2.6
At3g06940 putative mudrA protein                                       27  2.6
At3g21000 unknown protein                                              26  3.4
At5g20780 putative protein                                             26  4.4
At4g24560 putative protein                                             26  4.4
At3g20350 unknown protein                                              26  4.4
At1g80930 unknown protein                                              25  5.8
At1g75560 DNA-binding protein                                          25  5.8
At1g59265 polyprotein, putative                                        25  5.8
At1g58889 polyprotein, putative                                        25  5.8
At3g60560 putative protein                                             25  7.5
At1g65550 hypothetical protein                                         25  9.9

>At1g06740 mudrA-like protein
          Length = 726

 Score = 30.4 bits (67), Expect = 0.18
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 3   RAKKGRPPITRIRTE-MDDVETERRCGVCRMSDHSRKDCT 41
           +A KG P   R+R E  D V     CG C  + H R  CT
Sbjct: 684 KAMKGAPRKRRVRAEDRDRVRRVVHCGRCNQTGHFRTTCT 723


>At5g16505 mutator-like transposase-like protein (MQK4.25)
          Length = 597

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 3   RAKKGRPPITRIRTEMDDVETERR------CGVCRMSDHSRKDCT 41
           R  K R P  R + ++  VE  +R      CG C +  HS+K CT
Sbjct: 550 RPPKTRRPPGRPKKKVVRVENLKRPKRIVQCGRCHLLGHSQKKCT 594


>At5g51280 DEAD-box protein abstrakt
          Length = 591

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 14/53 (26%), Positives = 24/53 (44%), Gaps = 7/53 (13%)

Query: 1   MRRAKKGRPPI-TRIRTEMDDVET------ERRCGVCRMSDHSRKDCTNIRHQ 46
           ++ AK+  PP+   +   M++ ET       + C  C    H  +DC  + HQ
Sbjct: 517 LQEAKQRIPPVLAELNDPMEEAETIANASGVKGCAYCGGLGHRIRDCPKLEHQ 569


>At3g21040 hypothetical protein
          Length = 534

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 27  CGVCRMSDHSRKDC 40
           CGVC+M +H ++DC
Sbjct: 350 CGVCKMYNHYQEDC 363


>At3g06940 putative mudrA protein
          Length = 749

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (54%), Gaps = 1/38 (2%)

Query: 3   RAKKGRPPITRIRTEMDDVETERRCGVCRMSDHSRKDC 40
           R   GRP I ++   +D ++ + +C  C+   H++K C
Sbjct: 710 RRTPGRPKIKKVEP-LDMMKRQLQCSKCKGLGHNKKTC 746


>At3g21000 unknown protein
          Length = 405

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 7/19 (36%), Positives = 16/19 (83%)

Query: 22  ETERRCGVCRMSDHSRKDC 40
           ++E+ CG+C  ++H+++DC
Sbjct: 225 KSEKWCGLCYKNNHNQEDC 243


>At5g20780 putative protein
          Length = 818

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 7   GRPPITRIRTE-----MDDVETERRCGVCRMSDHSRKDCTN 42
           GRPP  RI +       +  +   +CG C    H+R  CTN
Sbjct: 775 GRPPKLRIHSVGEYEGKNKSKQPNKCGRCGGLGHNRVTCTN 815


>At4g24560 putative protein
          Length = 1008

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 15  RTEMDDVETERRCGVCRMSDHSRK 38
           RTE+ D E + RCG C+  + ++K
Sbjct: 713 RTEILDGENKYRCGSCKSYERAKK 736


>At3g20350 unknown protein
          Length = 673

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 8  RPPITRIRTEMDDVETERRCGVCRMSDHSRKDCTNIRHQ 46
          RP   +++++++D   ER CG     D+   DC  +R Q
Sbjct: 48 RPETPQLKSKVEDQNIER-CGGVEDGDNEDDDCNKMRCQ 85


>At1g80930 unknown protein
          Length = 900

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 14/38 (36%), Positives = 18/38 (46%)

Query: 2  RRAKKGRPPITRIRTEMDDVETERRCGVCRMSDHSRKD 39
          RR ++  P + R RTE DDV    R         SR+D
Sbjct: 19 RRRRERSPDVRRSRTETDDVARRVRVSDDEDRKSSRRD 56


>At1g75560 DNA-binding protein
          Length = 257

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 20  DVETERRCGVCRMSDHSRKDCTN 42
           D   ++ C  CR S H  +DC N
Sbjct: 152 DCTNDKACKNCRTSGHIARDCRN 174


>At1g59265 polyprotein, putative
          Length = 1466

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 26  RCGVCRMSDHSRKDCTNIRH 45
           +C +C +  HS K C+ ++H
Sbjct: 278 KCQICGVQGHSAKRCSQLQH 297


>At1g58889 polyprotein, putative
          Length = 1466

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 26  RCGVCRMSDHSRKDCTNIRH 45
           +C +C +  HS K C+ ++H
Sbjct: 278 KCQICGVQGHSAKRCSQLQH 297


>At3g60560 putative protein
          Length = 106

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 11 ITRIRTEMDDVETERRCGVCRMSDHSRKDCT 41
          + ++RT++D +ET     +  M DH+++ CT
Sbjct: 37 VEKMRTDLD-IETGTNKSIQAMDDHTKRLCT 66


>At1g65550 hypothetical protein
          Length = 515

 Score = 24.6 bits (52), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 27  CGVCRMSDHSRKDC 40
           C +CR SD ++KDC
Sbjct: 468 CTLCRDSDEAKKDC 481


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.325    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 977,574
Number of Sequences: 26719
Number of extensions: 21611
Number of successful extensions: 141
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 19
length of query: 46
length of database: 11,318,596
effective HSP length: 22
effective length of query: 24
effective length of database: 10,730,778
effective search space: 257538672
effective search space used: 257538672
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)