BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139841.14 + phase: 0 /pseudo
         (99 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g16030 unknown protein (At2g16030)                                 100  9e-23
At4g26730 putative protein                                             45  8e-06
At1g24480 unknown protein                                              36  0.003
At4g24805 unknown protein                                              33  0.024
At2g26110 unknown protein                                              27  1.3
At5g58410 unknown protein                                              27  2.3
At1g05370 hypothetical protein                                         27  2.3
At2g17180 putative C2H2-type zinc finger protein                       26  3.8
At5g65570 putative protein                                             25  5.0
At2g28300 unknown protein                                              25  6.6
At1g14890 unknown protein                                              25  6.6
At4g36870 BEL1-like homeobox 2 protein (BLH2)                          25  8.6

>At2g16030 unknown protein (At2g16030)
          Length = 231

 Score =  100 bits (250), Expect = 9e-23
 Identities = 46/97 (47%), Positives = 68/97 (69%), Gaps = 1/97 (1%)

Query: 1  MEKEIETFLRKLSLVAIAIASLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHL 60
          ME+ +E  L+++S+V ++I ++ ++I+ LQ P T +  EAPSKPH  FP+STCD +S   
Sbjct: 1  MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCD-SSPRQ 59

Query: 61 HLPSHKKNNRLWSSRDWNNKLHSFSRLFLHIRNLGLL 97
          HLP  KKN R+WSS  W ++L+SFS  FL  R+LG +
Sbjct: 60 HLPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFI 96


>At4g26730 putative protein
          Length = 208

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 60 LHLPSHKKNNRLWSSRDWNNKLHSFSRLFLHIRNLGLL 97
          +HLP  KKN R+W S  W ++L SFS  FL  R+LG +
Sbjct: 24 MHLPLPKKNARIWFSGAWKSRLSSFSTYFLRFRDLGFI 61


>At1g24480 unknown protein
          Length = 239

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 19 IASLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTS------THLHLPSHKKNNRLW 72
          I    L+ +FL +P     S    KP     +    +TS        L+   + +   +W
Sbjct: 7  ILKYVLVSIFLTLPLILFFSIQLRKPEKELIRIRPGYTSYDYYIQRQLNKTLNPRLRTIW 66

Query: 73 SSRDWNNKLHSFSRLFLHIRNLGLLPK 99
           +RDW+ K+  FSR F  ++  GLL K
Sbjct: 67 MTRDWDRKIKVFSRFFQDLKRQGLLSK 93


>At4g24805 unknown protein
          Length = 247

 Score = 33.1 bits (74), Expect = 0.024
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 60  LHLPSHKKNNRLWSSRDWNNKLHSFSRLFLHIRNLGLL 97
           L+   + K  ++W++RDW+ K+  FS  F  + + GLL
Sbjct: 69  LNKTQNPKLRKVWTTRDWDRKVRVFSTFFRRLSDRGLL 106


>At2g26110 unknown protein
          Length = 309

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 1/37 (2%)

Query: 40  APSKPHLRFPKSTC-DFTSTHLHLPSHKKNNRLWSSR 75
           +P K HL FP ST  D ++ + H P+  + N+ + SR
Sbjct: 103 SPDKSHLEFPPSTPEDNSNNNFHQPASIEQNQPFLSR 139


>At5g58410 unknown protein
          Length = 1873

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 18/89 (20%), Positives = 39/89 (43%)

Query: 9   LRKLSLVAIAIASLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSHKKN 68
           L+ LS  A  + ++   I  + + N        +    +  +   +F   ++H    K +
Sbjct: 849 LKSLSQDATLLTTVLSSIFIIDLENRMTSLVDNTLSESKEKRKDRNFVCDYVHAVCSKMD 908

Query: 69  NRLWSSRDWNNKLHSFSRLFLHIRNLGLL 97
           N+ W S +++ +  S S L   +R++ LL
Sbjct: 909 NQFWKSINYDVRKSSASTLAQFLRSVVLL 937


>At1g05370 hypothetical protein
          Length = 439

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 1   MEKEIETFLRKLSLVAIAIASLTLLILFLQIPNTRVPSEAPSKPHLRF----------PK 50
           M + +E F+     +A A+  +TL++LF    N  +     S  HL F          PK
Sbjct: 137 MSRNVEQFVILFDAIAAAVLLVTLIVLFSFSLNVPLLILCNSTAHLPFFFFFFIYKTNPK 196

Query: 51  STCDFTSTHLHLPSHKKNNR 70
                 S H H   + +N+R
Sbjct: 197 LLQISISFHEHTCDYTQNSR 216


>At2g17180 putative C2H2-type zinc finger protein
          Length = 270

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 49 PKSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFS 85
          P S   F S+++ LPS+ +N R   ++  NN++ S S
Sbjct: 9  PNSDIPFASSNVTLPSYNQNPRRKRTKLTNNEVGSSS 45


>At5g65570 putative protein
          Length = 738

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (54%)

Query: 60 LHLPSHKKNNRLWSSRDWNNKLHSFSRLF 88
          LH    ++NN     RD+N  L +FSR F
Sbjct: 6  LHYGGDRRNNAPAMRRDYNGGLIAFSRYF 34


>At2g28300 unknown protein
          Length = 2218

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 42   SKPHLRFPKSTCDFTSTHLHLPSHKKN 68
            S+P ++ P S      TH+HL   KK+
Sbjct: 1968 SEPQVQLPPSAEPMEGTHMHLEETKKS 1994


>At1g14890 unknown protein
          Length = 201

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 22 LTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFT 56
          +TLL +   I   R P E P+   L F +++C+ T
Sbjct: 14 VTLLFICRTISAVRFPPEQPTTDDLDFIRTSCNTT 48


>At4g36870 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 24.6 bits (52), Expect = 8.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 20  ASLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSHKKN 68
           A+ T   + L + N   P + PS      P+S  + ++ H+ LPS   N
Sbjct: 132 ATATAAAMQLFLMNPPPPQQPPSPSSTTSPRSHHNSSTLHMLLPSPSTN 180


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,374,123
Number of Sequences: 26719
Number of extensions: 96486
Number of successful extensions: 219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 11,318,596
effective HSP length: 75
effective length of query: 24
effective length of database: 9,314,671
effective search space: 223552104
effective search space used: 223552104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)