BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139748.7 + phase: 0 /pseudo
(144 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51850 putative protein 28 2.2
At3g58690 serine/threonine-specific protein kinase -like protein 28 2.2
At1g07655 unknown protein 27 2.8
At3g20750 hypothetical protein 27 3.7
At5g56860 unknown protein 27 4.8
At4g26150 putative transcription factor 27 4.8
At3g63400 cyclophylin (ROC22) 27 4.8
At4g36830 putative protein 26 6.3
At3g24550 protein kinase, putative 26 6.3
At2g30730 putative protein kinase 26 6.3
At1g49100 putative receptor-like protein kinase gb|AAD15465.1 26 8.3
>At5g51850 putative protein
Length = 590
Score = 27.7 bits (60), Expect = 2.2
Identities = 16/51 (31%), Positives = 23/51 (44%), Gaps = 7/51 (13%)
Query: 37 VKVRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSN 87
VK R P HE RR +SC+ +F EK+ + H+ SS+
Sbjct: 239 VKNREARPSHELRRD-------TTVSCSPRTRFSEKENKQSTSHKPNSSSS 282
>At3g58690 serine/threonine-specific protein kinase -like protein
Length = 400
Score = 27.7 bits (60), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 53 WWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI 90
W TR R+ + A G+++ +Q HR +SSNI +
Sbjct: 187 WETRMRIAVEAAKGLEYLHEQVSPPVIHRDFKSSNILL 224
>At1g07655 unknown protein
Length = 577
Score = 27.3 bits (59), Expect = 2.8
Identities = 13/42 (30%), Positives = 24/42 (56%)
Query: 53 WWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI*QSL 94
W TR ++ L A G+ F ++ R + HR ++SN+ + + L
Sbjct: 339 WSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDL 380
>At3g20750 hypothetical protein
Length = 208
Score = 26.9 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Query: 45 CHERRRPRWWTRPRVPLSC--ASGIKFREKQQRNEPRH 80
C+ P W P P S A GIKFR++++R R+
Sbjct: 164 CNALNTPMWRRGPLGPKSLCNACGIKFRKEEERKAKRN 201
>At5g56860 unknown protein
Length = 398
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 19/37 (50%)
Query: 39 VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQR 75
+R S C+ + P W + PR P S + R+++ R
Sbjct: 229 IRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 265
>At4g26150 putative transcription factor
Length = 352
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 19/37 (50%)
Query: 39 VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQR 75
+R S C+ + P W + PR P S + R+++ R
Sbjct: 198 IRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 234
>At3g63400 cyclophylin (ROC22)
Length = 567
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 40 RYRSPCHERRRPRWWTRPRVPLSCASGI--KFREKQQRNEPRHRCGQSS 86
R+RSP R PR+ R R G + R+ + PRHR S
Sbjct: 470 RFRSPPRRRSPPRYNRRRRSTSRSPDGYRRRLRDGSRSQSPRHRSRSQS 518
>At4g36830 putative protein
Length = 289
Score = 26.2 bits (56), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 117 WSYLWSSTKSLVIWRTLSCVLRMRVL 142
WSY++ T+ L ++RT+ VLR R L
Sbjct: 132 WSYVFYLTRFLHMFRTIFAVLRSRRL 157
>At3g24550 protein kinase, putative
Length = 652
Score = 26.2 bits (56), Expect = 6.3
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Query: 46 HERRRP--RWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI 90
H + RP W TR ++ L A G+ + + + HR ++SNI I
Sbjct: 366 HGKGRPTMEWSTRLKIALGSAKGLSYLHEDCNPKIIHRDIKASNILI 412
>At2g30730 putative protein kinase
Length = 338
Score = 26.2 bits (56), Expect = 6.3
Identities = 11/38 (28%), Positives = 23/38 (59%)
Query: 53 WWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI 90
W TR ++ + A G+++ ++ + + HR +SSNI +
Sbjct: 150 WITRVKIAVEAARGLEYLHEKVQPQVIHRDIRSSNILL 187
>At1g49100 putative receptor-like protein kinase gb|AAD15465.1
Length = 888
Score = 25.8 bits (55), Expect = 8.3
Identities = 12/39 (30%), Positives = 22/39 (55%)
Query: 52 RWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI 90
RW TR ++ + A G+++ K R HR +++NI +
Sbjct: 676 RWETRLQIAVEAAQGLEYLHKGCRPPIVHRDVKTANILL 714
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.350 0.149 0.585
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,087,308
Number of Sequences: 26719
Number of extensions: 109303
Number of successful extensions: 398
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 11
length of query: 144
length of database: 11,318,596
effective HSP length: 90
effective length of query: 54
effective length of database: 8,913,886
effective search space: 481349844
effective search space used: 481349844
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC139748.7