BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139747.6 + phase: 0 /pseudo
         (1770 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g09000 unknown protein                                              35  0.30
At4g18670 extensin-like protein                                        35  0.51
At3g24550 protein kinase, putative                                     32  3.3
At1g68725 putative arabinogalactan protein AGP19                       32  4.3
At5g14380 agp6                                                         31  5.6
At3g01700 arabinogalactan-protein AGP11                                31  5.6
At2g43210 unknown protein                                              30  9.6

>At3g09000 unknown protein
          Length = 541

 Score = 35.4 bits (80), Expect = 0.30
 Identities = 34/107 (31%), Positives = 45/107 (41%), Gaps = 22/107 (20%)

Query: 3   PSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNT-- 60
           P+     PTT  ++   T  S+  S +  S+AT+        + AP  T T SG   +  
Sbjct: 162 PTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGSARSAT 221

Query: 61  -TSSHSRPS-------------PTLVPS---GPSLY---LPSRGTRP 87
            T S+ RPS             PT  PS   GPS+     PSRGT P
Sbjct: 222 PTRSNPRPSSASSKKPVSRPATPTRRPSTPTGPSIVSSKAPSRGTSP 268


>At4g18670 extensin-like protein
          Length = 839

 Score = 34.7 bits (78), Expect = 0.51
 Identities = 26/79 (32%), Positives = 35/79 (43%), Gaps = 15/79 (18%)

Query: 9   PPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTSSHSRPS 68
           PP  +P+  T  TPS G S  + S +   P+               S P   +   S PS
Sbjct: 406 PPVVVPSPPT--TPSPGGSPPSPSISPSPPIT------------VPSPPTTPSPGGSPPS 451

Query: 69  PTLVPSGPSLYLPSRGTRP 87
           P++VPS PS   PS G+ P
Sbjct: 452 PSIVPSPPST-TPSPGSPP 469


>At3g24550 protein kinase, putative
          Length = 652

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 28/86 (32%), Positives = 37/86 (42%), Gaps = 7/86 (8%)

Query: 4   STTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTSS 63
           STT  PP    +    TTPSS    S  + +T  P ++ L    P      S P + T  
Sbjct: 22  STTTTPPPAASSPPPTTTPSS-PPPSPSTNSTSPPPSSPLPPSLP----PPSPPGSLTPP 76

Query: 64  HSRPSPT--LVPSGPSLYLPSRGTRP 87
             +PSP+  + PS PS   PS    P
Sbjct: 77  LPQPSPSAPITPSPPSPTTPSNPRSP 102


>At1g68725 putative arabinogalactan protein AGP19
          Length = 248

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 3   PSTTILPPTTIPTKTTATTPSSGSSQSAESKAT----I*PLANDLWSIAPFFTCTESGPN 58
           P TT  PPTT     T TTP   ++Q   S  T    + P +     +AP  +   + P 
Sbjct: 40  PPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVIS-PATPPP 98

Query: 59  NTTSSHSRPSPTLVPSGPSLYLPSRGTRP 87
               S    +PT+ P  P +  P   T P
Sbjct: 99  QPPQSPPASAPTVSP--PPVSPPPAPTSP 125


>At5g14380 agp6
          Length = 150

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 3   PSTTILPPTTIPTKTTATTP--SSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNT 60
           P+ T   P+  PTK  A  P  SS SS  A S A   P+  D +S +   + ++S    T
Sbjct: 42  PTATTKAPSA-PTKAPAAAPKSSSASSPKASSPAAEGPVPEDDYSAS---SPSDSAEAPT 97

Query: 61  TSSHSRPSP--TLVPSGPS 77
            SS   P+P  T    GPS
Sbjct: 98  VSSPPAPTPDSTSAADGPS 116


>At3g01700 arabinogalactan-protein AGP11
          Length = 136

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 20/73 (27%), Positives = 30/73 (40%)

Query: 10  PTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTSSHSRPSP 69
           PT  PTK+    P++    SA +     P+A +      +   + S      +  S P+P
Sbjct: 28  PTASPTKSPTKAPAAAPKSSAAAPKASSPVAEEPTPEDDYSAASPSDSAEAPTVSSPPAP 87

Query: 70  TLVPSGPSLYLPS 82
           T    GPS   PS
Sbjct: 88  TPEADGPSSDGPS 100


>At2g43210 unknown protein
          Length = 531

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 4   STTILPPTTIPTKTTATTPSSGSS-QSAESKATI 36
           S+ +LPP ++P      +PS+ SS Q +E+K+T+
Sbjct: 146 SSVVLPPGSVPLDAAVASPSTASSVQPSETKSTV 179


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.359    0.158    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,591,437
Number of Sequences: 26719
Number of extensions: 1389261
Number of successful extensions: 5260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5235
Number of HSP's gapped (non-prelim): 21
length of query: 1770
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1657
effective length of database: 8,299,349
effective search space: 13752021293
effective search space used: 13752021293
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 67 (30.4 bits)