BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139744.1 + phase: 0 
         (48 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g48110 glycine--tRNA ligase precursor, chloroplast (edd1)           26  3.4
At3g56770 putative HLH DNA binding protein                             25  5.8

>At3g48110 glycine--tRNA ligase precursor, chloroplast (edd1)
          Length = 1067

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 1   MFFHASFFSLLQSSNLLSAV---LCLVKELDYPSLEVVEMAVKCRMDEL 46
           + FH    ++L   N L  +   LCL  ++D   L VVE A    M +L
Sbjct: 729 ILFHEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAMSDL 777


>At3g56770 putative HLH DNA binding protein
          Length = 230

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 9   SLLQSSNLLSAVLCLVKELDYPSLEVVEMAVKCRMDEL 46
           S    S LL+ V+  VKEL   +LE+ +  +    DE+
Sbjct: 75  SKTDKSTLLAKVVQRVKELKQQTLEITDETIPSETDEI 112


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.327    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 903,903
Number of Sequences: 26719
Number of extensions: 18987
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 2
length of query: 48
length of database: 11,318,596
effective HSP length: 24
effective length of query: 24
effective length of database: 10,677,340
effective search space: 256256160
effective search space used: 256256160
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)