BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139708.7 + phase: 0
(159 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51010 unknown protein 182 9e-47
At5g17170 unknown protein 61 3e-10
At1g54500 unknown protein 41 3e-04
At5g52860 ABC transporter-like protein 32 0.19
At1g13180 actin-like protein 28 1.6
At5g37055 unknown protein 28 2.1
At5g44280 putative protein 28 2.7
At2g28190 putative copper/zinc superoxide dismutase 28 2.7
At5g44160 unknown protein 27 4.7
At2g30470 putative VP1/ABI3 family regulatory protein 27 4.7
At5g44310 late embryogenesis abundant protein-like 27 6.1
At5g39990 unknown protein 27 6.1
At5g27220 putative protein 27 6.1
At4g35910 unknown protein 27 6.1
At2g02620 hypothetical protein 27 6.1
At1g74050 putative 60S ribosomal protein L6 27 6.1
At3g15130 hypothetical protein 26 8.0
At1g03840 putative DNA-binding protein 26 8.0
>At5g51010 unknown protein
Length = 154
Score = 182 bits (461), Expect = 9e-47
Identities = 97/160 (60%), Positives = 115/160 (71%), Gaps = 9/160 (5%)
Query: 1 MALQVQ-ASLYTTRLSPTATPTLLRPLSNPSTLKTSFFSR-SLNLLLHPNQLQLAYGPPR 58
MA+Q+ +LY R S PT P+ ++SF S+ LL + L + PR
Sbjct: 1 MAMQLPPTTLYAGRSSVVLPPT------TPTLQRSSFLPYYSMRLLGNKKSLSKS-SAPR 53
Query: 59 FTMRVASKQAYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETD 118
F+MRV+SKQAYICRDCGYIYN+RT FDKLPD YFCPVC APKRRF+ Y DV+K N+ D
Sbjct: 54 FSMRVSSKQAYICRDCGYIYNDRTPFDKLPDNYFCPVCAAPKRRFRAYMPDVSKNVNDKD 113
Query: 119 VRKARKAELQRDEAVGKALPIAVAVGVVVLAGLYFYLNST 158
VRKARKAELQRDEAVGKALPI +AVGV+ LA LYFY+NST
Sbjct: 114 VRKARKAELQRDEAVGKALPIGIAVGVLALAALYFYVNST 153
>At5g17170 unknown protein
Length = 271
Score = 60.8 bits (146), Expect = 3e-10
Identities = 41/101 (40%), Positives = 51/101 (49%), Gaps = 26/101 (25%)
Query: 56 PPRFTMRVASKQ----AYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVN 111
PPRF ++ Q +IC DCG+IY +FD+ PD Y CP C APK+RF Y DVN
Sbjct: 180 PPRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKKRFAKY--DVN 237
Query: 112 KKANETDVRKARKAELQRDEAVGKAL-PIAVAVGVVVLAGL 151
+A+G L PI V VG +LAGL
Sbjct: 238 -----------------TGKAIGGGLPPIGVIVG--LLAGL 259
>At1g54500 unknown protein
Length = 195
Score = 40.8 bits (94), Expect = 3e-04
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 11/53 (20%)
Query: 69 YICRDCGYIYNERTA-----------FDKLPDKYFCPVCGAPKRRFKPYATDV 110
Y CR CGY Y+E FDKLP+ + CP CGA + F+ ++
Sbjct: 100 YECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEI 152
>At5g52860 ABC transporter-like protein
Length = 589
Score = 31.6 bits (70), Expect = 0.19
Identities = 17/49 (34%), Positives = 25/49 (50%)
Query: 8 SLYTTRLSPTATPTLLRPLSNPSTLKTSFFSRSLNLLLHPNQLQLAYGP 56
+L T+ +S T T L L P+T SF R++ L HP ++ GP
Sbjct: 15 TLTTSSISYTIPKTSLSLLRFPATEPPSFILRNITLTAHPTEILAVVGP 63
>At1g13180 actin-like protein
Length = 427
Score = 28.5 bits (62), Expect = 1.6
Identities = 19/56 (33%), Positives = 22/56 (38%), Gaps = 1/56 (1%)
Query: 56 PPRFTMRVASK-QAYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDV 110
PP + VA K + C C I E DK P KY G + PY DV
Sbjct: 225 PPEDSFDVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKQWKGVKPKTGAPYTCDV 280
>At5g37055 unknown protein
Length = 171
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/51 (33%), Positives = 21/51 (40%), Gaps = 16/51 (31%)
Query: 47 PNQLQLAYGPPRFTMRVASKQAYICRDCGYIYNERTAFDKLPDKYFCPVCG 97
P L+ A GPP +S + Y C CGYI Y C +CG
Sbjct: 115 PTYLKAAVGPPS-----SSSRRYFCSVCGYIAG-----------YNCCLCG 149
>At5g44280 putative protein
Length = 486
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Query: 77 IYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETDVRKARKAELQRDEA 132
+ N + ++PD V P+ RF P AT ++ +ET K E++ DEA
Sbjct: 3 VKNNSFSSAEIPD-----VADQPRDRFNPEATQDLQEKDETKEEKEGDEEVKHDEA 53
>At2g28190 putative copper/zinc superoxide dismutase
Length = 216
Score = 27.7 bits (60), Expect = 2.7
Identities = 13/21 (61%), Positives = 16/21 (75%)
Query: 22 LLRPLSNPSTLKTSFFSRSLN 42
L+ P SNPSTL++SF SLN
Sbjct: 17 LIPPSSNPSTLRSSFRGVSLN 37
>At5g44160 unknown protein
Length = 466
Score = 26.9 bits (58), Expect = 4.7
Identities = 24/86 (27%), Positives = 37/86 (42%), Gaps = 7/86 (8%)
Query: 37 FSRSLNLLLHPNQLQLAYGPPRFTMRVASKQAYIC--RDCGYIYNERTAFDKLP-DKYFC 93
F R NL LH L + + T + K+ Y+C + C + ++ R D K+FC
Sbjct: 75 FQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFC 134
Query: 94 PVCGAPK----RRFKPYATDVNKKAN 115
G K + K YA + KA+
Sbjct: 135 RKHGEKKWTCEKCAKRYAVQSDWKAH 160
>At2g30470 putative VP1/ABI3 family regulatory protein
Length = 790
Score = 26.9 bits (58), Expect = 4.7
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 93 CPVCGAPKRRFKPYATDVNKKANETDVRKA 122
C VC KRRFK KK E DV A
Sbjct: 672 CTVCSTVKRRFKTLMMRRKKKQLERDVTAA 701
>At5g44310 late embryogenesis abundant protein-like
Length = 331
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 100 KRRFKPYATDVNKKANETDVRKARKAELQRDEAVGKALPI 139
K R K YA K NE R A KA +++A KA +
Sbjct: 101 KERTKDYAEQTKNKVNEGASRAADKAYETKEKAKDKAYDV 140
Score = 26.2 bits (56), Expect = 8.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 100 KRRFKPYATDVNKKANETDVRKARKAELQRDEA 132
K + K YA K NE R A KAE +D+A
Sbjct: 210 KEKTKNYAEQTKDKVNEGASRAADKAEETKDKA 242
>At5g39990 unknown protein
Length = 447
Score = 26.6 bits (57), Expect = 6.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 9 LYTTRLSPTATPTLLRPLSNPSTLKTSFFSRSLNLLLHPNQLQLAYGPPRFTMRVA 64
L TT SPT L P + P L S S + + P Q+ PPRF ++
Sbjct: 52 LTTTLTSPTGGVRFL-PFTRPVLLTGSGSSAFVESKIKPQQISSLPSPPRFAYLIS 106
>At5g27220 putative protein
Length = 1181
Score = 26.6 bits (57), Expect = 6.1
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 1 MALQVQASLYT----TRLSPTATPTLLRPLSNPST 31
+A Q Q+S +T TR+ P+ + ++RP NPS+
Sbjct: 1143 IAFQAQSSHHTGYKRTRMDPSVSRPVIRPCFNPSS 1177
>At4g35910 unknown protein
Length = 458
Score = 26.6 bits (57), Expect = 6.1
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 92 FCPVCGAPKRRFKPYATDVNKKANETDV 119
FCP+C P R D ++ E+DV
Sbjct: 368 FCPICNGPLNRSDSSELDTFEEGQESDV 395
>At2g02620 hypothetical protein
Length = 635
Score = 26.6 bits (57), Expect = 6.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 63 VASKQAYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRR 102
+ K Y+C +CG+I +E A P K F P+ P ++
Sbjct: 381 INEKNLYVCVECGFILHETCA--DAPRKKFHPLHPHPLKQ 418
>At1g74050 putative 60S ribosomal protein L6
Length = 233
Score = 26.6 bits (57), Expect = 6.1
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 25/155 (16%)
Query: 17 TATPTLLRPLSNPSTL----------KTSFFSRSL--NLLLHPNQLQLAYGPPRFTMRVA 64
TA PT LR P T+ K F + L LLL ++ P R RV
Sbjct: 79 TAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR---RV- 134
Query: 65 SKQAYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETDVRKARK 124
QAY+ + DK DKYF V K++ + + K+ K
Sbjct: 135 -NQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKE------EKKEI 187
Query: 125 AELQRDEAVGKALPIAVAVGVVVLAGLYFYLNSTF 159
++++D+ KA+ A+ + + L YL + F
Sbjct: 188 PQVKKDDQ--KAVDAALIKAIEAVPELKTYLGARF 220
>At3g15130 hypothetical protein
Length = 689
Score = 26.2 bits (56), Expect = 8.0
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 74 CGYIYNERTAFDKLPDK 90
CGY+++ R AFD++ +K
Sbjct: 260 CGYLFSARKAFDQIKEK 276
>At1g03840 putative DNA-binding protein
Length = 506
Score = 26.2 bits (56), Expect = 8.0
Identities = 24/86 (27%), Positives = 37/86 (42%), Gaps = 7/86 (8%)
Query: 37 FSRSLNLLLHPNQLQLAYGPPRFTMRVASKQAYICRDCGYIYNERT-AFDKLP--DKYFC 93
F R NL LH L + + T + K+ Y+C + +++ T A L K+FC
Sbjct: 79 FQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFC 138
Query: 94 PVCGAPK----RRFKPYATDVNKKAN 115
G K + K YA + KA+
Sbjct: 139 RKHGEKKWKCEKCAKRYAVQSDWKAH 164
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,355,199
Number of Sequences: 26719
Number of extensions: 128356
Number of successful extensions: 511
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 20
length of query: 159
length of database: 11,318,596
effective HSP length: 91
effective length of query: 68
effective length of database: 8,887,167
effective search space: 604327356
effective search space used: 604327356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC139708.7