BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.9 - phase: 0 /pseudo
(145 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21310 putative retroelement pol polyprotein 90 4e-19
At3g45520 copia-like polyprotein 88 1e-18
At2g21460 putative retroelement pol polyprotein 87 3e-18
At5g35820 copia-like retrotransposable element 87 4e-18
At2g07550 putative retroelement pol polyprotein 87 4e-18
At4g10460 putative retrotransposon 84 2e-17
At2g15700 copia-like retroelement pol polyprotein 72 8e-14
At2g19840 copia-like retroelement pol polyprotein 72 1e-13
At2g13930 putative retroelement pol polyprotein 72 1e-13
At1g37110 71 2e-13
At4g21360 putative transposable element 70 5e-13
At4g04280 putative transposon protein 60 4e-10
At4g04600 putative polyprotein 57 4e-09
At1g47360 polyprotein, putative 56 8e-09
At4g04380 putative polyprotein 53 5e-08
At3g55300 putative protein 41 2e-04
At3g28160 non-LTR reverse transcriptase, putative 41 3e-04
At3g29782 hypothetical protein 35 0.014
At2g04460 putative retroelement pol polyprotein 32 0.090
At2g10090 pseudogene 32 0.15
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 90.1 bits (222), Expect = 4e-19
Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 12/149 (8%)
Query: 7 DIEKFTGDNDFGLLKVKMEA------MLIQQKCEKALKGKGSLPVTMSRAEKTE------ 54
++EK G+ D+ L K K+ A +L + ++A++ + S T S KTE
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 55 MVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVK 114
KARS ++L LG+ VLRKV KE TAA M L+ L+M KSL ++ +LKQ LY +KM
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 115 SKAIMELLVEFNKIIGDLENIEVRLEDVD 143
S I E + +F K+I DLEN++V + D D
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDED 155
>At3g45520 copia-like polyprotein
Length = 1363
Score = 88.2 bits (217), Expect = 1e-18
Identities = 58/157 (36%), Positives = 89/157 (55%), Gaps = 17/157 (10%)
Query: 3 GSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSR------------A 50
G++ ++EKF G D+ + K K+ A + L+ + P+ R
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLR-ESETPMGKERDSEKSDEDEKEER 61
Query: 51 EKTEMVD----KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ* 106
EK E + KARS IVL + D+VLRK+ KE++AA+M L+ LYM+K+L ++ +LKQ
Sbjct: 62 EKMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQK 121
Query: 107 LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
LYSFKM ++ +I + EF I+ DLEN+ V + D D
Sbjct: 122 LYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDED 158
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 87.0 bits (214), Expect = 3e-18
Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 15/152 (9%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDK-------- 58
++EKF G D+ + K K+ A L ALK + L ++ + TE +K
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 59 -------ARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFK 111
ARS IVL + D+VLRK+ KE +AA+M L+ LYM+K+L ++ + KQ LYSFK
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 112 MVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
M ++ +I + EF +II DLEN V + D D
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDED 158
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 86.7 bits (213), Expect = 4e-18
Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 26/160 (16%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVD--------- 57
++EKF GD D+ L K E +L + L+G G + TE+ D
Sbjct: 7 EVEKFDGDGDYILWK---EKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETA 63
Query: 58 --------------KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFL 103
KARS I+L LG+ VLRKV K+ TAA M L+ L+M KSL ++ +L
Sbjct: 64 TSKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYL 123
Query: 104 KQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
KQ LY +KM ++ + E + +F K+I DLEN++V + D D
Sbjct: 124 KQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDED 163
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 86.7 bits (213), Expect = 4e-18
Identities = 60/152 (39%), Positives = 87/152 (56%), Gaps = 15/152 (9%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMS-----------RAEKTEM 55
++EKF G D+ + K K+ A + ALK S S + EK E
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 56 VD----KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFK 111
++ KARS IVL + D+VLRK+ KESTAA+M L+ LYM+K+L ++ + KQ LYSFK
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 112 MVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
M ++ ++ + EF +II DLEN+ V + D D
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDED 158
>At4g10460 putative retrotransposon
Length = 1230
Score = 84.3 bits (207), Expect = 2e-17
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEK-------------T 53
++EKF G D+ L K K+ A + AL+ S+ + E+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 54 EMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMV 113
E KARS IVL + D+VLRK KE TA SM L+ LYM+K+L ++ +LKQ LYS+KM
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 114 KSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
++ ++ + EF ++I DLEN V + D D
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDED 156
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 72.4 bits (176), Expect = 8e-14
Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 30/166 (18%)
Query: 7 DIEKFTGDNDFGLLKVKMEAM--------------------LIQQKCEKALK----GKGS 42
++++F G DF L KV+M A +I+++ A + G
Sbjct: 8 EVDRFDGTGDFSLWKVRMLAHYGVLGLKGILNDEQLLRDPPVIEEEAAVAGRDYHVGDFE 67
Query: 43 LP--VTMSRAEKTEMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQ 100
LP V + + EK+E KA+ +IVL +G++VLRK+ TAA+MW L+ LYM SL ++
Sbjct: 68 LPSNVDLIKFEKSE---KAKDLIVLNVGNQVLRKIKNCETAAAMWSTLKRLYMETSLPNR 124
Query: 101 QFLKQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRL-EDVDAL 145
+L+ Y++KM S++I + +F K++ DL NI V + E+V A+
Sbjct: 125 IYLQLKFYTYKMTDSRSIDGNVDDFLKLVTDLNNIGVDVTEEVQAI 170
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 72.0 bits (175), Expect = 1e-13
Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 57 DKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSK 116
+KA +I + +GDKVLR + TAA W L+ LY+ KSL ++ +L+ +Y+++M SK
Sbjct: 42 EKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYRMQDSK 101
Query: 117 AIMELLVEFNKIIGDLENIEVRLED 141
+ E + EF K+I DL N+++++ D
Sbjct: 102 TLEENVDEFQKMISDLNNLQIQVPD 126
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 72.0 bits (175), Expect = 1e-13
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 52 KTEMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFK 111
+ E DKA++VI L + DKVLRK+ TAA W L+ L+M +SL H+ + + Y+FK
Sbjct: 42 RLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFYTFK 101
Query: 112 MVKSKAIMELLVEFNKIIGDLENIEVRLED 141
M ++K I E + +F KI+ DL ++++ + D
Sbjct: 102 MQENKKIDENIDDFLKIVADLNHLQIDVTD 131
>At1g37110
Length = 1356
Score = 70.9 bits (172), Expect = 2e-13
Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 22/167 (13%)
Query: 1 TMGSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKG---SLPVTMSRAE------ 51
T ++ +I+ F GD DF L K++++A L + L ++P+T S A+
Sbjct: 3 TTTTRVEIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDG 62
Query: 52 ------------KTEMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTH 99
K E ++A+++I+ + D VL KV +T A +W L YM SL +
Sbjct: 63 ESSGTKEVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPN 122
Query: 100 QQFLKQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRL-EDVDAL 145
+ + + LYSFKMV + I + + EF +I+ +L ++E+++ E+V A+
Sbjct: 123 RIYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAI 169
>At4g21360 putative transposable element
Length = 1308
Score = 69.7 bits (169), Expect = 5e-13
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 25/169 (14%)
Query: 2 MGSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKG----KGSLPVTMSRAE------ 51
M +K +I+ F GD DF L K+++EA L + AL K L V + E
Sbjct: 3 MSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESEDD 62
Query: 52 --------------KTEMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSL 97
K E D+A++ I+ + D VL KV TAA +W L L+M SL
Sbjct: 63 ETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETSL 122
Query: 98 THQQFLKQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRL-EDVDAL 145
++ + + LYSFKMV + +I + EF +I+ +L ++++++ E+V A+
Sbjct: 123 PNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAI 171
>At4g04280 putative transposon protein
Length = 1104
Score = 60.1 bits (144), Expect = 4e-10
Identities = 45/151 (29%), Positives = 74/151 (48%), Gaps = 24/151 (15%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKAL---KGKGSLPVTMSRAEKTEMVD---- 57
K +I+ F GD DF K+++EA L + +L K ++PV +++E D
Sbjct: 2 KVEIKTFNGDRDFSFWKIRIEAQLGVLGLKNSLTDFKLTKTVPVAKKEEKESEYEDDASD 61
Query: 58 -----------------KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQ 100
+A++ I+ + D VL KV TAA +W L L+M SL ++
Sbjct: 62 IKQATEEPDPIKFEQSEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNR 121
Query: 101 QFLKQ*LYSFKMVKSKAIMELLVEFNKIIGD 131
+ + LYSFKMV + +I + + EF +I+ D
Sbjct: 122 IYTQLKLYSFKMVDTLSIDQNVDEFLRILAD 152
>At4g04600 putative polyprotein
Length = 922
Score = 56.6 bits (135), Expect = 4e-09
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 38/144 (26%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSL---------PVTMSRAE------ 51
+I+ F GDNDF L K+++ A L L KG+L P+T S +
Sbjct: 8 EIKAFDGDNDFSLWKMRIMAQL------GVLGLKGTLTDFALTKTEPLTKSEEKQVASGD 61
Query: 52 -----------------KTEMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMT 94
K E ++A ++I+ + D VLRKV TAA++W L LYM
Sbjct: 62 ESSDSSAVLTKEVPDPIKIEKSEQAINIIINHISDTVLRKVNHYKTAATLWELLNELYME 121
Query: 95 KSLTHQQFLKQ*LYSFKMVKSKAI 118
SL ++ + + YSF+M+ SK I
Sbjct: 122 TSLPNRIYAQLKFYSFRMMTSKTI 145
>At1g47360 polyprotein, putative
Length = 1182
Score = 55.8 bits (133), Expect = 8e-09
Identities = 37/134 (27%), Positives = 61/134 (44%), Gaps = 18/134 (13%)
Query: 8 IEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSVIVLCL 67
I F DF L K ++ A L + + GK P+T E E
Sbjct: 6 IAVFDESGDFSLWKTRIMAHLSVIGLKDVVIGKTITPLTAEEEEDPE------------- 52
Query: 68 GDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVEFNK 127
+K+ TA W L+ L+M +SL H+ + + Y+FKM ++K I E + +F K
Sbjct: 53 -----KKIELCQTAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLK 107
Query: 128 IIGDLENIEVRLED 141
I+ DL ++++ + D
Sbjct: 108 IVADLNHLQIEVTD 121
>At4g04380 putative polyprotein
Length = 778
Score = 53.1 bits (126), Expect = 5e-08
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 58 KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKA 117
K RS IVL + D+VL + LYM+K+L +Q +LKQ LY FKM ++ +
Sbjct: 55 KTRSTIVLSVSDRVLEAS-------------DRLYMSKALPNQIYLKQKLYRFKMSENLS 101
Query: 118 IMELLVEFNKIIGDLENIEVRLEDVD 143
+ + EF I+ DLEN+ V + D D
Sbjct: 102 MEGNIDEFLHIVADLENLNVLVSDED 127
>At3g55300 putative protein
Length = 262
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/55 (38%), Positives = 33/55 (59%)
Query: 89 EALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
E Y TK+L + +LK SFKMV++K+I E L K++ DL ++++ D D
Sbjct: 37 EGNYQTKTLANMIYLKHKFTSFKMVENKSIEENLDTSLKLVADLASLDINTSDED 91
>At3g28160 non-LTR reverse transcriptase, putative
Length = 630
Score = 40.8 bits (94), Expect = 3e-04
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 3 GSKWDIEKFTGDNDFGLLKVK----------MEAMLIQQKCEKALKGKGSLPVTMSRAEK 52
GSK D+EKF G D+ KVK +E + + EK GS + E+
Sbjct: 4 GSK-DLEKFDGFGDYISWKVKFLDHLKDLDLLEGLKEEVCLEKGSGNSGSDEGRVKDLEE 62
Query: 53 TEMVD----KARSVIVLCLGDKVLRKVAKESTAA 82
++++ KAR+ I++ +GD VLRK+ KE T A
Sbjct: 63 CKILEEKKRKARAFIIVSVGDHVLRKIMKERTTA 96
>At3g29782 hypothetical protein
Length = 1130
Score = 35.0 bits (79), Expect = 0.014
Identities = 19/58 (32%), Positives = 30/58 (50%)
Query: 76 AKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVEFNKIIGDLE 133
+K ++ ++W LE Y T Q+F +FKMV SK IME + +I ++E
Sbjct: 144 SKAKSSKTLWLTLENKYKTDESRMQRFSTAKFLNFKMVDSKPIMEQVEALQRICQEIE 201
>At2g04460 putative retroelement pol polyprotein
Length = 128
Score = 32.3 bits (72), Expect = 0.090
Identities = 17/44 (38%), Positives = 23/44 (51%)
Query: 77 KESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIME 120
K ++ ++W LE Y T Q+F +FKMV SK IME
Sbjct: 85 KSKSSKTLWLALENKYKTDESGRQRFSTTKFLNFKMVDSKQIME 128
>At2g10090 pseudogene
Length = 119
Score = 31.6 bits (70), Expect = 0.15
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 67 LGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVEFN 126
L D + + T+ +W L+ Y TK Q++ +KMV S+ +M + E
Sbjct: 54 LSDPLYNVYSNVETSNELWDSLDKKYQTKDAGSQKYAAAKFLDYKMVDSRPMMVQVEELT 113
Query: 127 KIIGDL 132
+ D+
Sbjct: 114 CLFHDI 119
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,727,665
Number of Sequences: 26719
Number of extensions: 89344
Number of successful extensions: 311
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 36
length of query: 145
length of database: 11,318,596
effective HSP length: 90
effective length of query: 55
effective length of database: 8,913,886
effective search space: 490263730
effective search space used: 490263730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC139600.9