BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139356.2 + phase: 0 
         (180 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g49330 hypothetical protein                                        172  9e-44
At2g16190 hypothetical protein                                        163  4e-41
At3g62980 transport inhibitor response 1 (TIR1)                        29  1.2
At4g24390 transport inhibitor response-like protein                    28  2.7
At2g33240 putative myosin heavy chain                                  28  2.7
At1g76470 putative cinnamoyl-CoA reductase                             27  5.9
At5g26850 unknown protein                                              27  7.7
At2g03160 putative kinetechore (Skp1p-like) protein                    27  7.7

>At1g49330 hypothetical protein
          Length = 331

 Score =  172 bits (436), Expect = 9e-44
 Identities = 83/163 (50%), Positives = 110/163 (66%)

Query: 11  RRRSAPRSGPIPIPFIWATNHRAKIHNLNHLLQNKIFSITGDVQCKSCQTKFQMPFDLRT 70
           R   + +S  I  PF WATN R +I +L +L  N+I +ITG+VQC+ C+  +Q+ ++LR 
Sbjct: 157 RSTVSKKSDTISPPFPWATNRRGEIQSLEYLESNQITTITGEVQCRHCEKVYQVSYNLRE 216

Query: 71  KFDVISQYLVTNMNTMHDRAPKILMNPRLPRCAHCNQENSVKPVIAEKKKNINWLFLLLG 130
           +F  + ++ +T    M DRA K    P   RC  C +E +VKPVIAE+K  INWLFLLLG
Sbjct: 217 RFAEVVKFYLTEKRKMRDRAHKDWAYPEQRRCELCGREKAVKPVIAERKSQINWLFLLLG 276

Query: 131 QMLGCCKLEQLKYFCKYNNHHRTGAKNRVLYLTYFELCQQLDP 173
           Q LG C LEQLK FCK++ +HRTGAK+RVLYLTY  LC+ L P
Sbjct: 277 QTLGFCTLEQLKNFCKHSKNHRTGAKDRVLYLTYMGLCKMLQP 319


>At2g16190 hypothetical protein
          Length = 303

 Score =  163 bits (413), Expect = 4e-41
 Identities = 76/156 (48%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 24  PFIWATNHRAKIHNLNHLLQNKIFSITGDVQCKSCQTKFQMPFDLRTKFDVISQYLVTNM 83
           P+ WAT    KI +   L  N I  I+G V CK+C     + ++L  KF  +  Y+  N 
Sbjct: 150 PYPWATKKPGKIQSFRDLSSNNINVISGQVHCKTCDRTDTVEYNLEEKFSELYGYIKVNK 209

Query: 84  NTMHDRAPKILMNPRLPRCAHCNQENSVKPVIAEKKKNINWLFLLLGQMLGCCKLEQLKY 143
             M  RAP     P+L  C  C  E  +KPV++E+K+ INWLFLLLGQMLGCC L+QL+Y
Sbjct: 210 EEMRHRAPGSWSTPKLIPCRTCKSE--MKPVMSERKEEINWLFLLLGQMLGCCTLDQLRY 267

Query: 144 FCKYNNHHRTGAKNRVLYLTYFELCQQLDPSGPFNV 179
           FC+ N+ HRTG+K+RV+Y+TY  LC+QLDP GPFN+
Sbjct: 268 FCQLNSKHRTGSKDRVVYITYLSLCKQLDPEGPFNL 303


>At3g62980 transport inhibitor response 1 (TIR1)
          Length = 594

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 128 LLGQMLGCCKLEQLKYFCKY--NNHHRTGAKNRVLYLTYFELCQQLDPSGP 176
           L+   +GC KLE + YFC+   N    T A+NR   +T F LC  ++P  P
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRP-NMTRFRLC-IIEPKAP 412


>At4g24390 transport inhibitor response-like protein
          Length = 623

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 15/36 (41%), Positives = 17/36 (46%), Gaps = 1/36 (2%)

Query: 134 GCCKLEQLKYFCK-YNNHHRTGAKNRVLYLTYFELC 168
           GC KLE + YFC+   N   T        LT F LC
Sbjct: 416 GCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLC 451


>At2g33240 putative myosin heavy chain
          Length = 1611

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 13/51 (25%), Positives = 25/51 (48%)

Query: 42 LQNKIFSITGDVQCKSCQTKFQMPFDLRTKFDVISQYLVTNMNTMHDRAPK 92
          L  ++    G     +CQTK   PF  + + +V+   +V  +N +H + P+
Sbjct: 22 LDGEVVEANGQEIKVNCQTKTVSPFSPKQRDNVLVLKVVAKVNAVHPKDPE 72


>At1g76470 putative cinnamoyl-CoA reductase
          Length = 317

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 107 QENSVKPVIAEKKKNINWLF 126
           +E  V+P+ AEK KN+ W F
Sbjct: 275 KEKEVRPLSAEKLKNLGWKF 294


>At5g26850 unknown protein
          Length = 970

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 96  NP-RLPRCAHCNQENSVKPVIAEKKKNINWLFLLLGQMLGCCKLEQLKYF 144
           NP R+P+ A   +E   K + +E+ K IN +     +ML  CK +Q+ YF
Sbjct: 64  NPIRIPKIAKFLEERCYKDLRSEQMKFINIVTEAYNKMLCHCK-DQMAYF 112


>At2g03160 putative kinetechore (Skp1p-like) protein
          Length = 200

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 23/73 (31%), Positives = 30/73 (40%), Gaps = 8/73 (10%)

Query: 61  KFQMPFDLRTKFDVISQYLVTNMNTMHDRAPKIL------MNPRLPRCAHCNQENSVKPV 114
           KF   FD++T FD+I      N+  + D   K +      M P   R    N EN   P 
Sbjct: 118 KFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVR-ELFNIENDFTPE 176

Query: 115 IAEKKKNIN-WLF 126
             E  +N N W F
Sbjct: 177 EEEAIRNENAWTF 189


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.325    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,272,159
Number of Sequences: 26719
Number of extensions: 167277
Number of successful extensions: 458
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 8
length of query: 180
length of database: 11,318,596
effective HSP length: 93
effective length of query: 87
effective length of database: 8,833,729
effective search space: 768534423
effective search space used: 768534423
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)