BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138580.5 + phase: 0 /pseudo
(448 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07650 putative non-LTR retrolelement reverse transcriptase 99 4e-21
At2g17910 putative non-LTR retroelement reverse transcriptase 97 1e-20
At3g32110 non-LTR reverse transcriptase, putative 96 5e-20
At2g31080 putative non-LTR retroelement reverse transcriptase 96 5e-20
At1g24640 hypothetical protein 95 7e-20
At3g31420 hypothetical protein 95 9e-20
At3g45550 putative protein 94 2e-19
At2g31520 putative non-LTR retroelement reverse transcriptase 94 2e-19
At2g25550 putative non-LTR retroelement reverse transcriptase 94 2e-19
At2g05200 putative non-LTR retroelement reverse transcriptase 94 2e-19
At1g47910 reverse transcriptase, putative 94 2e-19
At2g45230 putative non-LTR retroelement reverse transcriptase 94 2e-19
At2g15510 putative non-LTR retroelement reverse transcriptase 91 1e-18
At4g10830 putative protein 89 5e-18
At2g16680 putative non-LTR retroelement reverse transcriptase 87 1e-17
At2g17610 putative non-LTR retroelement reverse transcriptase 87 2e-17
At4g09710 RNA-directed DNA polymerase -like protein 86 3e-17
At4g15590 reverse transcriptase like protein 83 4e-16
At4g04000 putative reverse transcriptase 82 6e-16
At4g08830 putative protein 81 1e-15
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 99.4 bits (246), Expect = 4e-21
Identities = 52/168 (30%), Positives = 82/168 (47%), Gaps = 9/168 (5%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL+++PV+ +S P + + + F WG +RK I W + + G
Sbjct: 317 LTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEG 376
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ + ++ N ALL K WRL+ D +LW +++ Y V D + DG CSS
Sbjct: 377 GLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQD--VRDGAWTKVRSVCSST 434
Query: 313 WREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
WR + + G W +GDG +I FW D+W ++PL +
Sbjct: 435 WRSVALGMREVVIPGLSWV-------IGDGREILFWMDKWLTNIPLAE 475
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 97.4 bits (241), Expect = 1e-20
Identities = 59/178 (33%), Positives = 91/178 (50%), Gaps = 18/178 (10%)
Query: 182 WLAKSVPFF--RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W AK++ +LLKS+ ALPVY +S FK P + + +++ F+W + KRKI
Sbjct: 757 WYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHW 816
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLED 299
+ W L+L K+ GG G L+ FN ALL K WR+L ++ +L+ +V +RY +
Sbjct: 817 LSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRY------FSN 870
Query: 300 GDLEDGGRSC--SSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
D R S WR I+ R+ + +G +R +G+G K W D+W D
Sbjct: 871 SDFLSATRGSRPSYAWRSILFGRELLMQG--------LRTVIGNGQKTFVWTDKWLHD 920
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 95.5 bits (236), Expect = 5e-20
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VLT++ V+ +S K P + + + F WG +K+K + W + L + G
Sbjct: 1331 LTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREG 1390
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ N AL+ K WR+L D +LW +V+ ++Y V D + D + + SS
Sbjct: 1391 GLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGD--VHDRNWTVAKSNWSST 1448
Query: 313 WREI-VRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
WR + V +RD I + W +GDG +I FW DRW + P+ D
Sbjct: 1449 WRSVGVGLRDVIWR-EQHWV-------IGDGRQIRFWTDRWLSETPIAD 1489
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 95.5 bits (236), Expect = 5e-20
Identities = 57/169 (33%), Positives = 88/169 (51%), Gaps = 11/169 (6%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL+++PV+ +S P + ++ F WG +K+K + W + K G
Sbjct: 655 LTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEG 714
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGD-LEDGGRSCSS 311
G+G+ R+ N AL+ K WRLL D+E+LW +V+ +Y V GG++D L+ R S+
Sbjct: 715 GIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV--GGVQDTSWLKPQPRWSST 772
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
W V +R+ + + G GW GDG I FW DRW PL +
Sbjct: 773 WRSVAVGLREVVVK-GVGWV-------PGDGCTIRFWLDRWLLQEPLVE 813
>At1g24640 hypothetical protein
Length = 1270
Score = 95.1 bits (235), Expect = 7e-20
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+LLKSV A+PV+A+S FK P +++S + F+W + RKI W+ L L K+
Sbjct: 754 VLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDS 813
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG ++ FN ALL K WRLL + L ++L +RY A L D L + S
Sbjct: 814 GGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL-DAAL---SQRPSF 869
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
WR I+ R+ + +G +++RVGDGA + W D W D
Sbjct: 870 GWRSILFGRELLSKG--------LQKRVGDGASLFVWIDPWIDD 905
>At3g31420 hypothetical protein
Length = 1491
Score = 94.7 bits (234), Expect = 9e-20
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+LLK+V A+PVY+++ FK + I SLL +F+W G + + + W +S+ K+
Sbjct: 949 VLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGNETKGMHWFTWKRMSIPKKE 1008
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG L FN+ALLGK W LL L +VL RY + GR S
Sbjct: 1009 GGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQ----GRRASF 1064
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
W+ I+ R+ + +G +R VGDG+ I+ W D W
Sbjct: 1065 VWKSILHGRNLLKKG--------LRCCVGDGSLINAWLDPW 1097
>At3g45550 putative protein
Length = 851
Score = 94.0 bits (232), Expect = 2e-19
Identities = 48/99 (48%), Positives = 64/99 (64%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILLKSV A+PVYA+S FK P GI+S I+SLL F+W + +KR I + W L K+
Sbjct: 412 ILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKE 471
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARY 290
GGLG L +FN ALL K WR++ +L+ +V+ ARY
Sbjct: 472 GGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARY 510
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 94.0 bits (232), Expect = 2e-19
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I+LKSV A+PVYA+S FK P GI+S I+SLL F+W + ++R I + W L K+
Sbjct: 947 IMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKE 1006
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG L +FN ALL K WRL+ +L+ +V+ ARY D + D + + S
Sbjct: 1007 GGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY-FKDVSILDAKVR---KQQSY 1062
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
W ++ DGI +G R +GDG I D P L
Sbjct: 1063 GWASLL---DGIALLKKG-----TRHLIGDGQNIRIGLDNIVDSHPP----RPLNTEETY 1110
Query: 372 KSITVRNMF 380
K +T+ N+F
Sbjct: 1111 KEMTINNLF 1119
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 94.0 bits (232), Expect = 2e-19
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I+LKSV A+PVYA+S FK P GI+S I+SLL F+W + ++R I + W L K+
Sbjct: 1173 IMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKE 1232
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG L +FN ALL K WRL+ +L+ +V+ ARY D + D + + S
Sbjct: 1233 GGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY-FKDVSILDAKVR---KQQSY 1288
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
W ++ DGI +G R +GDG I D P L
Sbjct: 1289 GWASLL---DGIALLKKG-----TRHLIGDGQNIRIGLDNIVDSHPP----RPLNTEETY 1336
Query: 372 KSITVRNMF 380
K +T+ N+F
Sbjct: 1337 KEMTINNLF 1345
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 94.0 bits (232), Expect = 2e-19
Identities = 55/162 (33%), Positives = 85/162 (51%), Gaps = 12/162 (7%)
Query: 191 RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKE 250
+++LK+VL ++P+Y++S FK PS + I+SLL +F+W D RK S + W L+ K
Sbjct: 685 QVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKN 744
Query: 251 YGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCS 310
GGLG + N +LL K WRLL E+L ++L+ +Y + +E S
Sbjct: 745 AGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMEC----KLPSQPS 800
Query: 311 SWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR I+ R+ I + G GW + +G K+ W D W
Sbjct: 801 HGWRSIIAGRE-ILKEGLGWL-------ITNGEKVSIWNDPW 834
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 94.0 bits (232), Expect = 2e-19
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+++KSV LP Y +S F+ P I S + S + KF+W D R + + WD L K
Sbjct: 575 VMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSD 634
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG + +FN ALL K WRL+ ++L+ KV RY L+ S S
Sbjct: 635 GGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLD----SIKSYSPSY 690
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR ++ R + +G + +RVG GA I W D W
Sbjct: 691 GWRSMISARSLVYKG--------LIKRVGSGASISVWNDPW 723
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 93.6 bits (231), Expect = 2e-19
Identities = 57/166 (34%), Positives = 83/166 (49%), Gaps = 12/166 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILLK+V ALP Y +S FK P I I+S++ +F+W ++ R + W LS K
Sbjct: 791 ILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAV 850
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG + FN+ALLGK WR++ ++++L KV +RY L G S
Sbjct: 851 GGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLN----APLGSRPSF 906
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVP 357
W+ I + I +G +R +G+G I+ W D W G P
Sbjct: 907 AWKSIYEAQVLIKQG--------IRAVIGNGETINVWTDPWIGAKP 944
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 91.3 bits (225), Expect = 1e-18
Identities = 67/200 (33%), Positives = 97/200 (48%), Gaps = 20/200 (10%)
Query: 182 WLAKSVPFF--RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W A+++ ILLK+V A+ VYA+S FK ++ S ++ F+W E KRK
Sbjct: 555 WFARTLSLGGKEILLKAVAMAMQVYAMSCFKLTKTTCKNLTSAMSDFWWNALEHKRKTHW 614
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLE- 298
+ W+ L L KE GGLG + FN ALL K WR+L L+ + +RY + LE
Sbjct: 615 VSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFARFFKSRYFDDEEFLEA 674
Query: 299 DGDLEDGGRSCSSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDV-- 356
D + CS I+ R+ + +G +R+ VG+G ++ W D W D+
Sbjct: 675 DLGVRPSYACCS-----ILFGRELLAKG--------LRKEVGNGKSLNVWMDPWIFDIAP 721
Query: 357 --PLCDRFSRLYDLAVNKSI 374
PL FS DL VN I
Sbjct: 722 RLPLQRHFSVNLDLKVNDLI 741
>At4g10830 putative protein
Length = 1294
Score = 89.0 bits (219), Expect = 5e-18
Identities = 46/107 (42%), Positives = 67/107 (61%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I+LKSV ++PVYA+S FK P I+S I++LL F+W + KR+I I W L K+
Sbjct: 1153 IMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKE 1212
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLE 298
GGLG L +FN ALL K WR++ + +L+ +++ ARY D L+
Sbjct: 1213 GGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILD 1259
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 87.4 bits (215), Expect = 1e-17
Identities = 55/164 (33%), Positives = 84/164 (50%), Gaps = 12/164 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILLKS+ ALPVY ++ F+ P G+ + + S++ F+W E KI I L+L K
Sbjct: 743 ILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSL 802
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GG G L+ FN ALL K WRL D +++ ++ +RY + L G S
Sbjct: 803 GGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQ----GTRPSY 858
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
WR I+ R+ + GG ++R +G+G + + W D+W D
Sbjct: 859 TWRSILYGRE-LLNGG-------LKRLIGNGEQTNVWIDKWLFD 894
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 86.7 bits (213), Expect = 2e-17
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+L+KS++TA+P Y++S F P +I I S + F+W + K KI + W L+ K+
Sbjct: 246 VLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKM 305
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGL + L++FN+ALL K WR+L +L +V A+Y ++ L+ S SS
Sbjct: 306 GGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFP-----KERLLDAKATSQSS 360
Query: 312 W-WREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
+ W+ I+ I G ++ G+G I W+D W
Sbjct: 361 YAWKSILHGTKLISRG--------LKYIAGNGNNIQLWKDNW 394
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 86.3 bits (212), Expect = 3e-17
Identities = 52/162 (32%), Positives = 81/162 (49%), Gaps = 18/162 (11%)
Query: 191 RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKE 250
+ILLK+VL+++P YA+ FK P+ + I+S+L +F+W DKRK++ + WD L+L
Sbjct: 731 QILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPIN 790
Query: 251 YGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCS 310
GGLG + K WR+L + +L +VL+ +Y + D S
Sbjct: 791 EGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFM---DCSASPSFAS 840
Query: 311 SWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR I+ RD + G GW +G G I+ W + W
Sbjct: 841 HGWRGILAGRD-LLRKGLGW-------SIGQGDSINVWTEAW 874
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 82.8 bits (203), Expect = 4e-16
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL ++P++ +S P+ ++ + + F WG +KRK + W + K G
Sbjct: 590 LTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAG 649
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ ++ N ALL K WRLL D+ +LW +VL +Y V D + D + SS
Sbjct: 650 GLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKVTD--VHDSSWLVPKATWSST 707
Query: 313 WREI-VRIRDGICEG 326
WR I V +R+G+ +G
Sbjct: 708 WRSIGVGLREGVAKG 722
>At4g04000 putative reverse transcriptase
Length = 1077
Score = 82.0 bits (201), Expect = 6e-16
Identities = 40/98 (40%), Positives = 60/98 (60%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
+LKSVL+ +P Y +S F+ P + I+S L +F+W D+RK+S I W ++L + G
Sbjct: 727 MLKSVLSTMPTYTMSCFQLPLSLCKRIQSTLTRFWWDSKPDQRKMSWISWQKMTLSFKSG 786
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARY 290
GLG ++ FN ALL K WRLL + L K+L+ +Y
Sbjct: 787 GLGFRDVQTFNKALLAKLSWRLLQNPSCLLAKLLLGKY 824
>At4g08830 putative protein
Length = 947
Score = 81.3 bits (199), Expect = 1e-15
Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 182 WLAKSVPFFR--ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W +S+ F L KSVL+ +P++ +S P + + L F G +K+K+
Sbjct: 456 WKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSAEKKKLHL 515
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLED 299
+ WD + L K GGLG+ + N AL+ K WRL+ DR +LW ++L ++Y V GL
Sbjct: 516 VAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKYRV---GL-- 570
Query: 300 GDLEDGGRSCSSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLC 359
RE+V G W VG+G I FW D W L
Sbjct: 571 --------------REVV-------SRGSRWV-------VGNGRDILFWSDNWLSHEALI 602
Query: 360 DR 361
+R
Sbjct: 603 NR 604
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.353 0.160 0.608
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,215,621
Number of Sequences: 26719
Number of extensions: 384091
Number of successful extensions: 2015
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1882
Number of HSP's gapped (non-prelim): 75
length of query: 448
length of database: 11,318,596
effective HSP length: 102
effective length of query: 346
effective length of database: 8,593,258
effective search space: 2973267268
effective search space used: 2973267268
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 62 (28.5 bits)
Medicago: description of AC138580.5