BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138579.1 - phase: 0
(881 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 525 e-149
At1g47910 reverse transcriptase, putative 516 e-146
At2g01840 putative non-LTR retroelement reverse transcriptase 512 e-145
At3g45550 putative protein 501 e-142
At2g25550 putative non-LTR retroelement reverse transcriptase 501 e-142
At2g31520 putative non-LTR retroelement reverse transcriptase 499 e-141
At2g17910 putative non-LTR retroelement reverse transcriptase 493 e-139
At1g24640 hypothetical protein 461 e-129
At2g16680 putative non-LTR retroelement reverse transcriptase 455 e-128
At2g05200 putative non-LTR retroelement reverse transcriptase 449 e-126
At2g41580 putative non-LTR retroelement reverse transcriptase 448 e-126
At4g09710 RNA-directed DNA polymerase -like protein 447 e-125
At3g31420 hypothetical protein 423 e-118
At2g17610 putative non-LTR retroelement reverse transcriptase 416 e-116
At4g10830 putative protein 403 e-112
At2g11240 pseudogene 391 e-108
At3g32110 non-LTR reverse transcriptase, putative 362 e-100
At2g31080 putative non-LTR retroelement reverse transcriptase 355 8e-98
At2g05980 putative non-LTR retroelement reverse transcriptase 263 2e-70
At4g02490 261 1e-69
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 525 bits (1353), Expect = e-149
Identities = 302/869 (34%), Positives = 454/869 (51%), Gaps = 26/869 (2%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI LIPK M D+RPI+LCNV+YK+ K++ANRLK++L IS+ Q+ FV GR I
Sbjct: 487 TNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLI 546
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A EL+H + K ++ +A K DISKAYDR++W +L+ M +GF+ W++ I
Sbjct: 547 SDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLI 606
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV++V Y V++N G II RGLRQGDPLS YLF+IC E L +++ AE I G
Sbjct: 607 MECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITG 666
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+K+ AP +SHLLFADD + + + I+E ASGQ +NY KS I+F ++
Sbjct: 667 LKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKH 726
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S+ ++ + L ++ G G YLGLP SK AT +++KDR+ KK+ W S LS
Sbjct: 727 ISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSP 786
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+E+L+K++ ++PTY MS F +P ++C +IE ++ FWW + +GRGLHW +W L+
Sbjct: 787 GGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNK-KEGRGLHWKAWCHLS 845
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K GG+ FK + FN+A+LGKQ WR +T D+L+A+++K+RYF + D L + LG PS
Sbjct: 846 RPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPS 905
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHL-------SH 474
+ W+S+ ++ ++K G R IG+G+TI++W + WI V HL S
Sbjct: 906 FAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSI 965
Query: 475 LRVSHCMLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSA 534
V +L + W+ + +F T I+ DRF W +G YSV+S
Sbjct: 966 HVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSG 1025
Query: 535 YRLCMQKL------LDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKI 588
Y + + + ++ + + + IW L VPPK+ + +WR N L L +
Sbjct: 1026 YWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRH 1085
Query: 589 VNCPPHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGL--NSSAVI-FHL 645
+ CV C S E HL F CP + W +S L ++ L N V+ H
Sbjct: 1086 LAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHK 1145
Query: 646 LQVLSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNN 705
Q + AL ILW +WK RN+ ++ V+ +A+ + WN N
Sbjct: 1146 SQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWN-------NRK 1198
Query: 706 VVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKC 765
S R +KW P+ G +KCN D ++ + G+G +R+ G + +
Sbjct: 1199 EPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRA 1258
Query: 766 LTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDC 825
L + V E L A+ + + FE DS+ +V S N D I D
Sbjct: 1259 LPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLV-SLIQNEMDIPSLAPRIQDI 1317
Query: 826 KTLFNHFYENSSVEFVRRQANEAAHELAK 854
+ L HF E +F RR+ N A A+
Sbjct: 1318 RNLLRHF-EEVKFQFTRREGNNVADRTAR 1345
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 516 bits (1330), Expect = e-146
Identities = 269/704 (38%), Positives = 402/704 (56%), Gaps = 13/704 (1%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI LIPK + M + RPI+LCNV YK+ +K+L RLK VL IS+ QS FV GR I
Sbjct: 271 TNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLI 330
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E+ H +T +A K D+SKAYD+++WN+++ ++ KMGF +W+ WI
Sbjct: 331 SDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWI 390
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M C+ TV Y V++N + G II RGLRQGDPLS YLFI+C E L + IRKAE I G
Sbjct: 391 MWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITG 450
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+K+ +P VSHLLFADD F +A + ++ IL+ ES SGQ IN+ KS I F
Sbjct: 451 IKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHK 510
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S + +I IL + + G G YLGLP G SK F+F++DR+ +IN WS+K LSK
Sbjct: 511 VEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSK 570
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EV++KS+ ++P Y MS F LP ++ ++ + FWW +G RG+HW++WD+L
Sbjct: 571 GGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG-DSRGMHWMAWDKLC 629
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+ K+DGG+ F+++ FN A+L KQ WR +T PD+L A+++K RYF + + L S ++PS
Sbjct: 630 SSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPS 689
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ +++ ++ G R+G G +IS+WN+ WI G L+V +
Sbjct: 690 YGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLI 749
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
W++ L+ +FD + V I + ED W+ G Y+V+S Y
Sbjct: 750 DSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTAR-- 807
Query: 542 LLDISEFKVLGAWD------YIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
LD++E L D YIW ++ PPK+++ +W++ +P LR++ + C C
Sbjct: 808 -LDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGC 866
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAG-ES 654
V C +++E H F C + IW LS + I S + ++ + HL + +G +S
Sbjct: 867 VSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTN--LDHLFWRIPSGVDS 924
Query: 655 ALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAAR 698
A + I+W IWK RN K++ +V +L A W A+
Sbjct: 925 APYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQ 968
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 512 bits (1319), Expect = e-145
Identities = 299/888 (33%), Positives = 463/888 (51%), Gaps = 46/888 (5%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I LIPK M D+RPI+LC YKI +K+L RLK+ L ISD+Q+ FVPG++I
Sbjct: 849 TQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNI 908
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A EL+H K++ + G VA K DISKAYDR++WN+L+ VM+++GF+ +WVKWI
Sbjct: 909 SDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWI 968
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V Y V++N G I RG+RQGDPLS YLF+ CAE LS+++RKAE + IHG
Sbjct: 969 MTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHG 1028
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+KI + +SHLLFADD F RA + I + E ASGQ INY KS I F +
Sbjct: 1029 MKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQK 1088
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
++ + +L + V G GKYLGLP GR K F +I ++ ++ W+ LS
Sbjct: 1089 IPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSP 1148
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+++K++ ++P Y M+ F LPT +C+EI ++ +FWWG
Sbjct: 1149 AGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG------------------ 1190
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+N+G + FK L FN A+L KQ WR +TNP +L+AR+YK Y+P +L+++ G + S
Sbjct: 1191 -KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHAS 1249
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIP-PTVGDFHLSHLRVSHC 480
Y W S+ K +L+ G R R+GDG T IW + W+ TL P P G ++V+
Sbjct: 1250 YGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLP---TLPPRPARGPILDEDMKVADL 1306
Query: 481 MLQHHKMWDVPFLETIF--DQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLC 538
++ + WD E + + Q +A + S Y + D + W N +Y+VRS Y +
Sbjct: 1307 WRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAA--RDSYKWAYTRNTQYTVRSGYWVA 1364
Query: 539 MQKLLDISEFKVLGAWD-------YIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNC 591
++++E +++ + IW LK+ PK+K+ +WR L T +LR + +
Sbjct: 1365 TH--VNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPA 1422
Query: 592 PPHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIF---HLLQV 648
P C C +ADE H+ F C + +W +N S ++ + L + + Q
Sbjct: 1423 DPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQN 1482
Query: 649 LSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDW--NAARNARLNNNV 706
L + I+W +WK RN ++ + V ++A +W + +++N
Sbjct: 1483 LPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNT 1542
Query: 707 VNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCL 766
+ +R +WS P G +KCN D+ + + G +RD G + + L
Sbjct: 1543 AQSNDR--PLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKL 1600
Query: 767 TPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDCK 826
EALG L ALQ V + FE D+ ++ + D ++ D +
Sbjct: 1601 QQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLIN-KTEDHHLLETLLYDIR 1659
Query: 827 TLFNHFYENSSVEFVRRQANEAAHELAK-AATLSASFHILVTPPHCIE 873
SS+ +V R+ N AA +L K A ++S+ + PP ++
Sbjct: 1660 FWMTKL-PFSSIGYVNRERNLAADKLTKYANSMSSLYETFHVPPRWLQ 1706
>At3g45550 putative protein
Length = 851
Score = 501 bits (1291), Expect = e-142
Identities = 284/750 (37%), Positives = 416/750 (54%), Gaps = 23/750 (3%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI +IPK ++ D+RPIALCNV+YK+ +K + NRLK L+ +SD+Q+ F+PGR I
Sbjct: 108 TNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRII 167
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN M A E++H K + + ++ +A K D+SKAYDR++W++L+ M GF +W+ WI
Sbjct: 168 NDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWI 227
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M V++V YSV++N G I RG+RQGDPLS YLFI+C + LS LI+ +SG I G
Sbjct: 228 MAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRG 287
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
V+I N AP ++HL FADD F +A +K++ +V E SGQ IN QKS I F
Sbjct: 288 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSR 347
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S Q + +L + G GKYLGLP GR KK FN+I DR+ ++ SWS+K LS
Sbjct: 348 VYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSP 407
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+L+KS+ ++P Y MS F LP + EIE +L +FWW + RG+ W++W RL
Sbjct: 408 AGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWW-EKASNKRGIPWVAWKRLQ 466
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ L FN A+L KQ WR + P++L AR+ KARYF + + S
Sbjct: 467 YSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQS 526
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W SL + +L+ G+R+ IGDG TI + + + D P + D + L + +
Sbjct: 527 YGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVV--DSHPPRPLLTDEQHNGLSLDNLF 584
Query: 482 LQ--HHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCM 539
H + WD L+T DQ I + L T K DR +W+ + G+Y+VRS Y L
Sbjct: 585 QHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLST 644
Query: 540 QKLLDI--SEFKVLGAWDY---IWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPH 594
+ + K G+ D IWNL + PK+K+ +WR+ LPT RL + + P
Sbjct: 645 HDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPG 704
Query: 595 CVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSS-AVIFHLLQ--VLSA 651
C C +E H F CP ++ W LS+ ++S + + + I LLQ ++
Sbjct: 705 CPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITD 764
Query: 652 GESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDG 711
+ + +LW IWK RNN ++N++ ++ + + RA + +W LN G
Sbjct: 765 SQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEW-------LNATQTQGPR 817
Query: 712 EHSQSTRV---IKWSKPNRGRMKCNIDASF 738
+ T W KP +KCN DASF
Sbjct: 818 RLPKRTTAAGNTTWVKPQMPYIKCNFDASF 847
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 501 bits (1289), Expect = e-142
Identities = 311/881 (35%), Positives = 458/881 (51%), Gaps = 37/881 (4%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI +IPK ++ D+RPIALCNV+YK+ +K L NRLK L+ +SD+Q+ F+PGR I
Sbjct: 869 TNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 928
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN M A E++H K + + ++ +A K D+SKAYDR++W++L+ M GF +W+ WI
Sbjct: 929 NDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWI 988
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M V++V YSV++N G I RG+RQGDPLS YLFI+C + LS LI +SG + G
Sbjct: 989 MAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRG 1048
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
V+I N AP ++HL FADD F +A +K++ +V E SGQ IN QKS I F
Sbjct: 1049 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSR 1108
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S Q + IL++ G GKYLGLP GR KK F +I DR+ K+ ++WS++ LS
Sbjct: 1109 VYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSP 1168
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+++KS+ ++P Y MS F LP + EIE +L +FWW + Q RG+ W++W RL
Sbjct: 1169 AGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGIPWVAWKRLQ 1227
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ L FN A+L KQ WR + P++L AR+ KARYF L + + S
Sbjct: 1228 YSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQS 1287
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W SL + +LK G+R IGDG I I + + PP + ++ ++
Sbjct: 1288 YGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH----PPRPLNTEETYKEMTINN 1343
Query: 482 LQHHK----MWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAY-R 536
L K WD + DQ I + L S K D+ +WN GEY+VRS Y
Sbjct: 1344 LFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWL 1403
Query: 537 LCMQKLLDISEFK-VLGAWDY---IWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCP 592
L +I G+ D IWNL + PK+K+ +WR L T RL + +
Sbjct: 1404 LTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1463
Query: 593 PHCVLCNSADEDSLHLFFNCPSSSNIWNLSN--------LSNDVKIVVSQGLNSSAVIFH 644
P C C+ +E H F CP ++ W LS+ +SND + +S LN F
Sbjct: 1464 PSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILN-----FV 1518
Query: 645 LLQVLSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDW-NAARNARLN 703
+S L ++W IWK RNN ++N ++ + + A + +DW NA ++ +
Sbjct: 1519 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 1578
Query: 704 NNVVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIART 763
+ E+ I+W P +KCN DA F + G IR+ G + +
Sbjct: 1579 PSPTRQIAENK-----IEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGS 1633
Query: 764 KCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSF-GANRHDSTEFGAII 822
L + E LL ALQ + E D + +++ G + H S +
Sbjct: 1634 MKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSS--LANHL 1691
Query: 823 NDCKTLFNHFYENSSVEFVRRQANEAAHELAKAATLSASFH 863
D N F + F+R++ N+ AH LAK ++F+
Sbjct: 1692 EDISFWANKF-ASIQFGFIRKKGNKLAHVLAKYGCTYSTFY 1731
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 499 bits (1286), Expect = e-141
Identities = 312/881 (35%), Positives = 458/881 (51%), Gaps = 37/881 (4%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI +IPK ++ D+RPIALCNV+YK+ +K L NRLK L+ +SD+Q+ F+PGR I
Sbjct: 643 TNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 702
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN M A E++H K + + ++ +A K D+SKAYDR++W++L+ M GF +W+ WI
Sbjct: 703 NDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWI 762
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M V++V YSV++N G I RG+RQGDPLS YLFI+C + LS LI +SG + G
Sbjct: 763 MAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRG 822
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
V+I N AP ++HL FADD F +A +K++ +V E SGQ IN QKS I F
Sbjct: 823 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSR 882
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S Q + IL++ G GKYLGLP GR KK F +I DR+ K+ ++WS++ LS
Sbjct: 883 VYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSP 942
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+++KS+ ++P Y MS F LP + EIE +L +FWW + Q RG+ W++W RL
Sbjct: 943 AGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGIPWVAWKRLQ 1001
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ L FN A+L KQ WR + P++L AR+ KARYF L + + S
Sbjct: 1002 YSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQS 1061
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W SL + +LK G+R IGDG I I + + PP + ++ ++
Sbjct: 1062 YGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH----PPRPLNTEETYKEMTINN 1117
Query: 482 LQHHK----MWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAY-R 536
L K WD + DQ I + L S K D+ +WN GEY+VRS Y
Sbjct: 1118 LFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWL 1177
Query: 537 LCMQKLLDISEFK-VLGAWDY---IWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCP 592
L +I G+ D IWNL + PK+K+ +WR L T RL + +
Sbjct: 1178 LTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1237
Query: 593 PHCVLCNSADEDSLHLFFNCPSSSNIWNLSN--------LSNDVKIVVSQGLNSSAVIFH 644
P C C+ +E H F CP ++ W LS+ +SND + +S LN F
Sbjct: 1238 PICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILN-----FV 1292
Query: 645 LLQVLSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDW-NAARNARLN 703
+S L ++W IWK RNN ++N ++ + + A + +DW NA ++ +
Sbjct: 1293 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 1352
Query: 704 NNVVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIART 763
+ E+ I+W P +KCN DA F + G IR+ G + +
Sbjct: 1353 PSPTRQIAENK-----IEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGS 1407
Query: 764 KCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSF-GANRHDSTEFGAII 822
L + E LL ALQ + E D + +++ G + H S +
Sbjct: 1408 MKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSS--LANHL 1465
Query: 823 NDCKTLFNHFYENSSVEFVRRQANEAAHELAKAATLSASFH 863
D N F + F+RR+ N+ AH LAK ++F+
Sbjct: 1466 EDISFWANKF-ASIQFGFIRRKGNKLAHVLAKYGCTYSTFY 1505
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 493 bits (1268), Expect = e-139
Identities = 269/767 (35%), Positives = 415/767 (54%), Gaps = 19/767 (2%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T+I LIPK M D RPI+LC+V+YKI +K+L RLK+ L +S QS FVP R I
Sbjct: 465 THICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLI 524
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E++H +T + ++ +AFK D+SKAYDR++W +L+ +M +GF+ +W+ WI
Sbjct: 525 SDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWI 584
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV++N + G II RG+RQGDPLS LF++C E L ++ KAE +G I G
Sbjct: 585 MNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITG 644
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ + V+HLLFADD L +A E + L SGQ IN KS I F +N
Sbjct: 645 IQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKN 704
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ I + + GTGKYLGLP SK+ F FIK+++ ++ W +K LS+
Sbjct: 705 VDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQ 764
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+KS+ ++P Y MS F LP +LC ++ ++ FWW +S Q R +HWLSW RL
Sbjct: 765 GGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWW-NSMQQKRKIHWLSWQRLT 823
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG FK L FN A+L KQ WR + +L +R++++RYF DFL ++ G PS
Sbjct: 824 LPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPS 883
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ + +L G R IG+G +W +KW+ P F L+VS +
Sbjct: 884 YAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLI 943
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQ- 540
+ W++ L +F + V I+K KED F W +NG YSV++ Y +
Sbjct: 944 DPTSRNWNLNMLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQ 1002
Query: 541 ---KLLDISEFK--VLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
+L ++ K V +D IWNL PK++ +W+ +P RLR + + C
Sbjct: 1003 VHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGC 1062
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESA 655
++C++ +E H+ F CP + +W +++LS+ + + + + L Q
Sbjct: 1063 LMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHL 1122
Query: 656 LFAT--ILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDGEH 713
F + ILW +WK RN ++ ++++A ++W +A+ N D +H
Sbjct: 1123 RFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQN------DEKH 1176
Query: 714 SQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVI 760
++ KW P G +KCNI ++ + G +RD +G ++
Sbjct: 1177 ---LKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLL 1220
>At1g24640 hypothetical protein
Length = 1270
Score = 461 bits (1185), Expect = e-129
Identities = 260/727 (35%), Positives = 393/727 (53%), Gaps = 50/727 (6%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T++ LIPK M D RPI+LC+V+YKI +K++A RL+ L + +SD QS FV R I
Sbjct: 450 THLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLI 509
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A ELVH K + + +A K D+SKAYDR++W+YL+ ++L +GF ++WV WI
Sbjct: 510 TDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWI 569
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M+CV +V YSV++N+ G II RGLRQGDPLS +LF++C EGL+ L+ KA+ G + G
Sbjct: 570 MVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEG 629
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ N P+V HLLFADD +A +++V++ IL+V +A+GQ IN KS I F
Sbjct: 630 IQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEK 689
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ + I L + G G YLGLP SK +++KDR+ +K++ W ++CLS+
Sbjct: 690 VDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQ 749
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+KS+ ++P + MS F LP + C+ +E + SFWW S R +HW SW+RL
Sbjct: 750 GGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWW-DSCDHSRKIHWQSWERLC 808
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG+ F+ + FN A+L KQ WR + PD L++R+ K+RYF DFL ++L PS
Sbjct: 809 LPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPS 868
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
+ WRS+ + +L G + R+GDG ++ +W + WI + P + L+V +
Sbjct: 869 FGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALL 928
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
WD L +F + + IK + D FVW +G++SV+SAY L Q
Sbjct: 929 NPRTGFWDEEVLHDLFLPEDILR-IKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQT 987
Query: 542 LLDISEFKV------LGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
+V LG +WNL+ PK+K +W+V
Sbjct: 988 KSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWKV---------------------- 1025
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAV---IFHLLQVLSAG 652
C E + H F CP S IW LS+ G ++ ++ I HLL+
Sbjct: 1026 --CGELGESTNHTLFLCPLSRQIWALSDYP-----FPPDGFSNGSIYSNINHLLENKDNK 1078
Query: 653 E-----SALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAAR-----NARL 702
E +F ILW IWK RN+ I+ ++ + + + +W A+ + L
Sbjct: 1079 EWPINLRKIFPWILWRIWKNRNSFIFEGISYPATDTVIKIRDDVVEWFEAQCLDGEGSAL 1138
Query: 703 NNNVVNG 709
N + NG
Sbjct: 1139 NPPLSNG 1145
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 455 bits (1171), Expect = e-128
Identities = 270/868 (31%), Positives = 444/868 (51%), Gaps = 34/868 (3%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T++ LIPK M D RPI+LC+V+YKI +K+L+ +LK+ L +S +QS F R I
Sbjct: 439 THLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFAERLI 498
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E+VH +T K ++ + FK D+SKAYDR++W++L+ +++ +GF+ +W+ WI
Sbjct: 499 SDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWI 558
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV++N + G I RG+RQGDP+S +LF++C E L ++++AE S + G
Sbjct: 559 MGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSG 618
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ + P V+HLLF DD L RA S+ M L SGQ IN +KS I F
Sbjct: 619 IQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVK 678
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ + I N + GTGKYLGLP SK+ F +IK+++ ++ W K LS+
Sbjct: 679 VDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQ 738
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+E+L+KS+ ++P Y M+ F LP LC ++ ++ FWW +S +HW+ +L
Sbjct: 739 GGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWW-NSMEFSNKIHWIGGKKLT 797
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG FK L FN A+L KQ WR ++ +++++I+K+RYF DFL + G PS
Sbjct: 798 LPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPS 857
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ + +L G + IG+G+ ++W +KW+ + P + H++VSH +
Sbjct: 858 YTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLI 917
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAY----RL 537
+ W++ L +F ++ V I+ S ED + W NNG Y+V+S Y R
Sbjct: 918 DPLTRNWNLKKLTELFHEKDVQLIMHQRPLIS-SEDSYCWAGTNNGLYTVKSGYERSSRE 976
Query: 538 CMQKLLDISEF--KVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
+ L ++ V +D +W+L+ PK+K +W+ + L RLR + + C
Sbjct: 977 TFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGC 1036
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQ-----VLS 650
+ C E HL F CP + +W LS + G + + I H++Q +
Sbjct: 1037 LFCKEEIETINHLLFQCPFARQVWALSLIQAP---ATGFGTSIFSNINHVIQNSQNFGIP 1093
Query: 651 AGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGD 710
+ +LW IWK RN ++ + ++ +A + N NA+ ++
Sbjct: 1094 RHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYE---ECNLWINAQEKSSGGVSP 1150
Query: 711 GEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTPKC 770
EH KW+ P G +KCNI ++ + G+ +RD G ++ + +
Sbjct: 1151 SEH-------KWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSYSQVY 1203
Query: 771 DVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDCKTLFN 830
+ + AL+ + + F S ++ + H E+ +I F
Sbjct: 1204 SLFDAKIKSWDWALESMDHFHFDKVTFAATSHDIIKAL----HKPNEWPMLIGHIAE-FL 1258
Query: 831 HFYENSSVEFV---RRQANEAAHELAKA 855
F ++ S F+ Q N A E+AK+
Sbjct: 1259 SFTKDISDWFMMMESTQCNNGAAEIAKS 1286
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 449 bits (1156), Expect = e-126
Identities = 288/865 (33%), Positives = 455/865 (52%), Gaps = 49/865 (5%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T+I LIPK + D+RPIALCN+ YKI AK++ R++ +L K IS+NQS FVPGR I
Sbjct: 382 THIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVI 441
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + E++H+ +T +A K D+SKAYDR++W++LK V+ + GF W+ W+
Sbjct: 442 SDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWV 501
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
+ CV +V YS ++N G ++ RGLRQGDPLS LFI+C E LS L +A+ + G
Sbjct: 502 LECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPG 561
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
V++ N P V+HLLFADD F +++P + IL ASGQ+IN+ KS + FS
Sbjct: 562 VRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSK 621
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+S + + IL+++ GTGKYLGLP GR K+ F I D+I +K +SW+S+ LS+
Sbjct: 622 TPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQ 681
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG++V++K++L S+P Y MS F LP++LC +I+ +L FWW + R W++W +L
Sbjct: 682 AGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWW-DTKPDVRKTSWVAWSKLT 740
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
KN GG+ F+ + N ++L K GWR + +P++L++RI +Y F++ L PS
Sbjct: 741 NPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPS 800
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSH--LRVSH 479
+ WRS+ + ILK G W I +G+ +SIWN+ W++ L+P +G H LRVS
Sbjct: 801 HGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVP--IGPALREHQDLRVSA 858
Query: 480 CMLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCM 539
+ Q+ WD + I I + +S D+ W +G+Y+ RS Y +
Sbjct: 859 LINQNTLQWDWNKIAVILPNYE-NLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIAS 917
Query: 540 QKLLDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLCN 599
+ I + + +W L+ PK+K+L+W+ A LP ++L + ++ C C
Sbjct: 918 VASIPIPQTQ-FNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRC- 975
Query: 600 SADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAG--ESALF 657
A E + HLFF+C ++ +W L+ L S L++ +++ + + G +ALF
Sbjct: 976 GAPESTTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTGVTSAALF 1035
Query: 658 ATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAA-RNARLNNNVVNGDGEHSQS 716
I I+ + +L+ + W +A R NVV+
Sbjct: 1036 PWIC---------GIYGKLGTMTRAILDALA-----WQSAQRCLPKTRNVVH-------- 1073
Query: 717 TRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIR-----DDEGAFVIARTKCLTPKCD 771
I R C +DA++ + G G + + E A A + L
Sbjct: 1074 --PISQLPVLRSGYFCFVDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRRLPSALS 1131
Query: 772 VHIGEALGLLTALQWVHELQLGPIEFEL--DSKKVVDSFGANRHDSTEFGAIINDCKTLF 829
EA + +AL +H LQLG + + DSK VVD+ +N + +G ++ + + L
Sbjct: 1132 ---AEAWAIKSAL--LHALQLGRTDLMVLSDSKSVVDALTSNISINEIYG-LLMEIRALR 1185
Query: 830 NHFYENSSVEFVRRQANEAAHELAK 854
F+ + F+ R AN A AK
Sbjct: 1186 VSFH-SLCFNFISRSANAIADATAK 1209
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 448 bits (1153), Expect = e-126
Identities = 262/827 (31%), Positives = 427/827 (50%), Gaps = 43/827 (5%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T++ LIPK M D RPI+LC+V+YKI +K+L+ RLK+ L +S QS FV R +
Sbjct: 216 THLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVAERLV 275
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E+VH +T K ++ + FK D+SKAYDR++W +LK ++L +GF+ W+ W+
Sbjct: 276 SDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWM 335
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV++N + G I RGLRQGDPLS +LF++C E L ++ +AE G I G
Sbjct: 336 MACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISG 395
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ P V+HLLFADD L +A E + + L SGQ IN +KS I F
Sbjct: 396 IQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAK 455
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
++ + I N +Q GTGKYLGLP SK+ F FIK+++ +++ W +K LS+
Sbjct: 456 VNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQ 515
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+++L+KS+ + P Y M+ F L +LC ++ ++ FWW +S + +HW+ +L
Sbjct: 516 GGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWW-NSVQDKKKIHWIGAQKLM 574
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K GG FK L FN A+L KQ R T+ D+L+++I K+RY+ DFL ++ G PS
Sbjct: 575 LPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPS 634
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W+S+ + +L +G + IG+G+ +W + WI D P ++ L+VS +
Sbjct: 635 YAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLI 694
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLC--- 538
+ W++ L +F + + I + S ++D F W N+G Y+V+S Y LC
Sbjct: 695 DPFSRNWNLNMLRDLFPWKEIQIICQQRPMAS-RQDSFCWFGTNHGLYTVKSEYDLCSRQ 753
Query: 539 --MQKLLDISEFKVLG-AWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
Q + E L + IWNL PK+K +W+V + + RLR + V C
Sbjct: 754 VHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGC 813
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAV--IFHLL-----QV 648
+C +E H+ F CP + +W L+ + + + G S + H++
Sbjct: 814 SMCPEKNETLNHILFQCPLARQVWALTPMQSP-----NHGFGDSIFTNVNHVIGNCHNTE 868
Query: 649 LSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVN 708
LS + I+W +WK RN +++ + ++ +A +W A +
Sbjct: 869 LSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHELICS----- 923
Query: 709 GDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTP 768
+ T+ + W P +KCNI ++ G+ +R+ +G V+ ++C
Sbjct: 924 -----KEPTKDLTWIPPLMNELKCNIGIAWSKKHQMAGVSWVVRNWKGR-VLLHSRCSFS 977
Query: 769 KCDVHIGEAL-GLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHD 814
+ H + G A++ + + + + +FGA+ HD
Sbjct: 978 QISSHFDAKIKGWNYAVESMDQFKFDRV-----------TFGASTHD 1013
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 447 bits (1149), Expect = e-125
Identities = 281/876 (32%), Positives = 448/876 (51%), Gaps = 62/876 (7%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T++ LIPK + D+RPIALCNV YKI AK+L RL+ L + IS +QS FVPGR+I
Sbjct: 428 THVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAI 487
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + E++H+ + +A K D+SKAYDRI WN+L+ V++++GF +W++W+
Sbjct: 488 ADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWV 547
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV TV YS ++N G ++ RGLRQGDPLS YLFI+C E LS L RKA+ G + G
Sbjct: 548 MQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVG 607
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+++ +P V+HLLFADD F + P+ + NIL+ E ASGQ+IN KS I FS
Sbjct: 608 IRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSK 667
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
Q + + L++ G GKYLGLP GR K+ F+ I DRI ++ +SWS + LS
Sbjct: 668 TPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSS 727
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+++L+K++L S+P+Y M F LP SLC +I+ +L FWW S R + W+SWD+L
Sbjct: 728 AGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWW-DSKPDKRKMAWVSWDKLT 786
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHN-P 420
N+GG+ F+ + K WR + P +L++R+ +Y F+ S +
Sbjct: 787 LPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFA 839
Query: 421 SYVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWI---AGDITLIPPTVGDFHLSHLRV 477
S+ WR + + +L+ G W IG GD+I++W W+ + + PPT + LS
Sbjct: 840 SHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLS---- 895
Query: 478 SHCMLQHH-KMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYR 536
H ++ H K W+V + Q I K ++ +D VW +GEY+ ++ Y
Sbjct: 896 VHDLICHDVKSWNVEAIRKHLPQYE-DQIRKITINALPLQDSLVWLPVKSGEYTTKTGYA 954
Query: 537 LCMQKLLDISEFKVLGAWD-YIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
L KL ++ W IW + PKVK+ +W+ + LP L + + C
Sbjct: 955 LA--KLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTC 1012
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHL-------LQV 648
C E SLHL CP + +W L+ V S+ +SS + + L
Sbjct: 1013 KRCGQT-ESSLHLMLLCPYAKKVWELA----PVLFNPSEATHSSVALLLVDAKRMVALPP 1067
Query: 649 LSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVN 708
G + L+ +LW +WK RN I+++ + ++ ++ +A + D A A+L + +
Sbjct: 1068 TGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKA---ILDARAWMEAQLLIHHPS 1124
Query: 709 GDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIG--------ICIRDDEGAFVI 760
++ T PN C +DA++ G+G + I++++ +
Sbjct: 1125 PISDYPSPT-------PNLKVTSCFVDAAW-TTSGYCGMGWFLQDPYKVKIKENQSSSSF 1176
Query: 761 ARTKCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGA 820
+ + VH+ L T ++ ++ D K+++ + + E
Sbjct: 1177 VGSALMAETLAVHLALVDALSTGVRQLNVFS--------DCKELISLLNSGK-SIVELRG 1227
Query: 821 IINDCKTLFNHFYENSSVEFVRRQANEAAHELAKAA 856
+++D + L F + F+ R +N A LAK+A
Sbjct: 1228 LLHDIRELSVSF-THLCFFFIPRLSNVVADSLAKSA 1262
>At3g31420 hypothetical protein
Length = 1491
Score = 423 bits (1088), Expect = e-118
Identities = 246/766 (32%), Positives = 384/766 (50%), Gaps = 77/766 (10%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TN+ LIPK + ++ +RPIALCNV YKI +K+L NRLK+ L I++NQ+ FVPGR I
Sbjct: 672 TNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITENQAAFVPGRLI 731
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
+NA+ A E+ + K + + +A K DI+KAYDR++W++L+ M +MGF+ +W++ I
Sbjct: 732 TNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQMGFNTKWIERI 791
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M+CV V +SV++N G I RG+R GDPLS YLFI+CAE LS +I++AE + + G
Sbjct: 792 MICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVLSHMIKQAEINKKLKG 851
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+++ P +SHLLFADD F A +K
Sbjct: 852 IRLSTQGPFISHLLFADDSIFFTLANQRSCTAIKE------------------------- 886
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ + ++L + G GKYLGLP + KK FN+I +++ K WS K LS+
Sbjct: 887 --PDTKRRMRHLLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEKVKDKTQGWSKKFLSQ 944
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+K++ ++P Y M+IF L +C+EI+ +L FWW SG + +G+HW +W R++
Sbjct: 945 GGKEVLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWS-SGNETKGMHWFTWKRMS 1003
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ FK L FNLA+LGKQ W + +P+ L+AR+ + RYFP + + + G S
Sbjct: 1004 IPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQGRRAS 1063
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
+VW+S+ + + +LK G R +GDG I+ W + W+ H
Sbjct: 1064 FVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPWLP--------------------LHSP 1103
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
+K D P +Q V ++ ++D W+ +G Y+V+SAY L
Sbjct: 1104 RAPYKQEDAP------EQLLVC--------STARDDLIGWHYTKDGMYTVKSAYWLATHL 1149
Query: 542 LLDISEFKVLG---AWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLC 598
G +W K PK+K+ W++ + T LR + +N C C
Sbjct: 1150 PGTTGTHPPPGDIKLKQLLWKTKTAPKIKHFCWKILSGAIATGEMLRYRHINKQSICKRC 1209
Query: 599 NSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESALFA 658
+E S HLFF C + W + L N ++ + + F + + + +
Sbjct: 1210 CRDEETSQHLFFECDYAKATWRGAGLPN---LIFQDSIVTLEEKFRAMFTFNPSTTNYWR 1266
Query: 659 T----ILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNG-DGEH 713
ILW +W+ RN + ++ A +W + V+N H
Sbjct: 1267 QLPFWILWRLWRSRNILTFQQKHIPWEVTVQLAKQDALEWQDIED---RVQVINPLSRRH 1323
Query: 714 SQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFV 759
S +W++P G KCN D S+ N G IRD+ G F+
Sbjct: 1324 SNRYAANRWTRPVCGWKKCNYDGSYSTIINS-KAGWVIRDEHGQFI 1368
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 416 bits (1069), Expect = e-116
Identities = 224/627 (35%), Positives = 345/627 (54%), Gaps = 20/627 (3%)
Query: 61 ILDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKW 120
I DN + A EL+H TK K Q VA KLDI+KA+D+I+W +++ +M +MGFS +W W
Sbjct: 2 ITDNILIAHELIHSLHTK-KLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 121 IMMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIH 180
IM C+ T YS+++N + II RG+RQGDP+S YL+++C EGLS+LI+ + + +H
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLH 120
Query: 181 GVKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSR 240
G K N P +SHLLFA D +F +A E M + N+L++ E ASGQA+N+QKS I F +
Sbjct: 121 GFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGK 180
Query: 241 NGSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLS 300
+ +L + G G+YLGLP GR+K F+FI + +K+++W +K LS
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLS 240
Query: 301 KAGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRL 360
AG+EVL+KS++ +IPTY MS F LP L +I + FWW ++ + + + W++W +L
Sbjct: 241 PAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHK-IPWVAWSKL 299
Query: 361 AAHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNP 420
K GG++ + L FN+A+L KQ WR + P +L+AR++KA+YFP+ L +
Sbjct: 300 NDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQS 359
Query: 421 SYVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHC 480
SY W+S+ + ++ G ++ G+G+ I +W + W+ + P D S L+VS
Sbjct: 360 SYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDL 419
Query: 481 MLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQ 540
+++ W+ L + Q + I + D W ++G YSV+S Y L +
Sbjct: 420 LIEGR--WNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRK 477
Query: 541 -------KLLDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPP 593
L +E + IW PPK+K+ WR A N LPT L+ + +
Sbjct: 478 LSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDD 537
Query: 594 HCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGE 653
C C A ED HL F C S IW ++ +K+ L S++ +L + +
Sbjct: 538 TCQRCGEASEDVNHLLFQCRVSKEIWEQAH----IKLCPGDSLMSNSFNQNLESIQKLNQ 593
Query: 654 SA-----LFATILWSIWKQRNNKIWND 675
SA LF I W IWK RN+ I+N+
Sbjct: 594 SARKDVSLFPFIGWRIWKMRNDLIFNN 620
>At4g10830 putative protein
Length = 1294
Score = 403 bits (1035), Expect = e-112
Identities = 205/447 (45%), Positives = 285/447 (62%), Gaps = 1/447 (0%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI +IPK ++ D+RPIALCNV+YKI +K L RLK LD +SD+Q+ F+PGR +
Sbjct: 849 TNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLV 908
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN M A E++H KT+ + +Q +A K D+SKAYDR++WN+L+ M GFS W+KWI
Sbjct: 909 NDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWI 968
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M V++V+YSV+VN G I RG+RQGDPLS YLFI+CA+ L+ LI+ A G I G
Sbjct: 969 MGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRG 1028
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++I N P V+HL FADD F ++ +K++ +V E SGQ IN KS I F
Sbjct: 1029 IRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSR 1088
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ Q + NIL +Q+ G GKYLGLP GR K+ FN+I +R+ K+ +SWS+K LS
Sbjct: 1089 VHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSP 1148
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+++KS+ S+P Y MS F LP ++ EIE +L +FWW + R + W++W RL
Sbjct: 1149 AGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWW-EKNAKKREIPWIAWKRLQ 1207
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ L FN A+L KQ WR + NP++L ARI KARYF L + S
Sbjct: 1208 YSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQS 1267
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTI 448
Y W S+ ++K GSR+ +GDG T+
Sbjct: 1268 YGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>At2g11240 pseudogene
Length = 1044
Score = 391 bits (1004), Expect = e-108
Identities = 210/515 (40%), Positives = 298/515 (57%), Gaps = 4/515 (0%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T+I LIPK M D+RPIALC V YKI +K+L+ RL+ +L + IS+NQS FVP R+
Sbjct: 313 THITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRAS 372
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + E +HY K+ + +A K ++SKAYDRI+W+++K VM +MGF W+ WI
Sbjct: 373 NDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWI 432
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
+ C+ TV YS ++N G + RGLRQGDPLS +LFIIC+E LS L RKA+ G++ G
Sbjct: 433 LQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLG 492
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+++ P V+HLLFADD F R++ IL+ E ASGQ IN KS I FSR
Sbjct: 493 LRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRK 552
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ IL +Q V G GKYLGLP M GR K+ FN I DRI ++ SWSS+ LS
Sbjct: 553 TPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLST 612
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+ ++KS+L S+PTY MS F L SLC I+ L FWW S + + + W++W ++A
Sbjct: 613 AGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADK-KKMCWIAWSKMA 671
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+K +GG+ FK + FN A+L K WR + +P ++ RI +Y FL S+ S
Sbjct: 672 KNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASS 731
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
+ WR +C K ++K+ IG G +WN W++ + P + V+ +
Sbjct: 732 HGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPWLSLSTSSTPMGPALEQFKSMTVAQLI 791
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKE 516
Q K WD E ++D ++ S TS+K+
Sbjct: 792 CQTTKSWD---REKVWDLSPFKTTLQASRITSMKQ 823
Score = 53.9 bits (128), Expect = 4e-07
Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 18/246 (7%)
Query: 618 IWNLSNLSNDVKIV----VSQGLNSSAVIFHLLQVLSAGESALFATILWSIWKQRNNKIW 673
+W+LS ++ + QGL S ++ L + G+ L ILW++W RN I+
Sbjct: 803 VWDLSPFKTTLQASRITSMKQGLEVSKLLV-TLPPIGIGQGQLPIWILWNLWNCRNKLIF 861
Query: 674 NDVTDAQNFVLERASSLLYDWNAAR-NARLNNNVVNGDGEHSQSTRVIKWSKPNRGRMKC 732
+ ++ ++ S +W A+ A + V+ G I S+ + ++C
Sbjct: 862 EQKHISSMDLISQSISQSTEWLGAQIQASKSKIVIPG----------ISPSEIDLDTIQC 911
Query: 733 NIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTPKCDVHIGEALGLLTALQWVHELQL 792
+ DAS+ + G G D + +A L A+Q +L
Sbjct: 912 STDASWREETLQAGFGWVFVDHSNHLESHHKAAAMNIRSPLLAKASALSLAIQHAADLGF 971
Query: 793 GPIEFELDSKKVVDSFGANRHDSTEFGAIINDCKTLFNHFYENSSVEFVRRQANEAAHEL 852
+ DS+++V H E I+ D L +F ENS FV+R+ N A L
Sbjct: 972 KKLVVASDSQQLVKVLNGEPHPM-ELHGIVFDISVLSLNFEENS-FSFVKRENNSKADAL 1029
Query: 853 AKAATL 858
AKAA L
Sbjct: 1030 AKAALL 1035
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 362 bits (930), Expect = e-100
Identities = 258/906 (28%), Positives = 421/906 (45%), Gaps = 65/906 (7%)
Query: 4 IALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSILD 63
+ LI K + +RPI+LCNV++K KV+ RLK V++K I Q+ F+PGR D
Sbjct: 1029 VVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSFIPGRLSTD 1088
Query: 64 NAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWIMM 123
N + E+VH + K KG +G + KLD+ KAYDRI W+ L+ + G WV+WIM
Sbjct: 1089 NIVVVQEVVHSMRRK-KGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMK 1147
Query: 124 CVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHGVK 183
CVE ++ N E RGLRQGDPLS YLF++C E L LI + A+ +K
Sbjct: 1148 CVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIK 1207
Query: 184 ICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRNGS 243
I + P +SH+ FADD LF A + V++ +LE ASGQ ++ +KS+I+FS+N
Sbjct: 1208 ISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVL 1267
Query: 244 QSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSKAG 303
+ I ++A GKYLG+P + R K TF + R ++ W + LS AG
Sbjct: 1268 RDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAG 1327
Query: 304 REVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLAAH 363
R L K++L SI + MS LP S D ++K+ +F WG S + + H ++W R+
Sbjct: 1328 RLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWG-STLEKKKQHLVAWTRVCLP 1386
Query: 364 KNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARY--FPRCDFLQSSLGHNPS 421
+ +GG+ +S N A++ K GWR + + +L A++ +++Y D + N S
Sbjct: 1387 RREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTVAKSNWS 1446
Query: 422 YVWRSL-CNSKFILKAGSRWRIGDGDTISIWNNKWIA----GDITLIPPTVGDFHLSHLR 476
WRS+ + ++ W IGDG I W ++W++ D +++P ++ L
Sbjct: 1447 STWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQM----LC 1502
Query: 477 VSHCMLQHHKMWDV----PFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVR 532
+ + + WD+ PF+ +A I+ + + DR W ++G ++V+
Sbjct: 1503 TARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDS---VTGAHDRLAWGMTSDGRFTVK 1559
Query: 533 SAYRLCMQKLLDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCP 592
SA+ + D + + +W ++ P +V+ +W V + T + + +
Sbjct: 1560 SAFAMLTND--DSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDS 1617
Query: 593 PHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVL--- 649
C +C E LH+ +CP+ S IW+ +V + L S LL+ L
Sbjct: 1618 DVCQVCRGGIESILHVLRDCPAMSGIWDR---------IVPRRLQQSFFTMSLLEWLYSN 1668
Query: 650 --------SAGESALFATILWSIWKQRNNKIWND---VTDAQNFVLERASSLLYDWNAAR 698
+ S +FA +W WK R + I+ + D F+ + A + ++
Sbjct: 1669 LRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREV 1728
Query: 699 NARLNNNVVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGA- 757
RL+ VN + I+W+ P G K N D + N G +R+ GA
Sbjct: 1729 ELRLSGLRVN---------KPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAW 1779
Query: 758 ---FVIARTKCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHD 814
F + +C P + E G+ L QL +E E+DS+ VV +
Sbjct: 1780 CGGFAVNIGRCSAP-----LAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGE 1834
Query: 815 STEFGAIINDCKTLFNHFYENSSVEFVRRQANEAAHELAK-AATLSASFHILVTPPHCIE 873
+ ++ C + + + V R+AN A LA A +LS H+ P +
Sbjct: 1835 THPLSFLVRLCHNFLSKDW-TVRISHVYREANSLADGLANHAFSLSLGLHVFDEIPISLV 1893
Query: 874 HILIND 879
+L D
Sbjct: 1894 MLLSED 1899
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 355 bits (910), Expect = 8e-98
Identities = 254/892 (28%), Positives = 415/892 (46%), Gaps = 39/892 (4%)
Query: 4 IALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSILD 63
+ LI K ++ +RP++LCNV++KI K++ RLK V+ K I Q+ F+PGR +D
Sbjct: 353 LVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSID 412
Query: 64 NAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWIMM 123
N + E VH + K KG +G + KLD+ KAYDR+ W++L+ + G S W IM
Sbjct: 413 NIVLVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMA 471
Query: 124 CVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHGVK 183
V SV+ N E + RGLRQGDPLS YLF++C E L LI + +
Sbjct: 472 GVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIA 531
Query: 184 ICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRNGS 243
+ +SH+ FADD LF A ++ +++ +LE ASGQ ++ +KS+IFFS N S
Sbjct: 532 VSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVS 591
Query: 244 QSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSKAG 303
+ + I + GKYLG+P + R K TF + +R+ ++ W + LS AG
Sbjct: 592 REMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAG 651
Query: 304 REVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLAAH 363
R L K++L SIP + MS LP S D +++ +F WG S + + H LSW ++
Sbjct: 652 RITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWG-STMEKKKQHLLSWRKICKP 710
Query: 364 KNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNP--- 420
K +GG+ +S N A++ K GWR + + ++L AR+ + +Y + +Q + P
Sbjct: 711 KAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY--KVGGVQDTSWLKPQPR 768
Query: 421 -SYVWRSLC-NSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVS 478
S WRS+ + ++ G W GDG TI W ++W+ + + T ++V+
Sbjct: 769 WSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPEGERIKVA 828
Query: 479 HCMLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSI-KEDRFVWNKENNGEYSVRSAYRL 537
W++ L + ++ + + D W +G ++VRSAY L
Sbjct: 829 ADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSL 888
Query: 538 CMQKLLDISEFKVLGA-WDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCV 596
D+ + +G+ ++ IW L P +V+ +W V++N++ T + + ++ C
Sbjct: 889 LQG---DVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICS 945
Query: 597 LCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESAL 656
+CN A+E LH+ +CP+ IW SQ L +F + + L
Sbjct: 946 VCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSL--LEWLFTNMDPVKGIWPTL 1003
Query: 657 FATILWSIWKQRNNKIWND---VTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDGEH 713
F +W WK R ++ + D F+ + A + R++ V
Sbjct: 1004 FGMGIWWAWKWRCCDVFGERKICRDRLKFIKDMAEEV---------RRVHVGAVGNRPNG 1054
Query: 714 SQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDE----GAFVIARTKCLTPK 769
+ R+I+W P+ G +K D + N G IR+ + G F + C P
Sbjct: 1055 VRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPL 1114
Query: 770 CDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDCKTLF 829
++ G GLL A W + +E +LD K VV ++ ++ C+ F
Sbjct: 1115 AELW-GAYYGLLIA--W--DKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFF 1169
Query: 830 NHFYENSSVEFVRRQANEAAHELAK-AATLSASFHILVTPPHCIEHILINDM 880
+ V V R+AN A LA A TL H P + +L+ D+
Sbjct: 1170 TRDW-LVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADV 1220
>At2g05980 putative non-LTR retroelement reverse transcriptase
Length = 1352
Score = 263 bits (673), Expect = 2e-70
Identities = 209/689 (30%), Positives = 322/689 (46%), Gaps = 47/689 (6%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T +ALI K MKD+RPI+ CNV+YKI +K++ANRLK +L I+ NQS F+ R +
Sbjct: 659 TILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLM 718
Query: 62 LDNAMAAIELVH-YKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKW 120
++N + A ELV Y K + A K+DISKA+D + W +L V+ + ++ W
Sbjct: 719 MENLLLASELVKDYHKESISSRS---ALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHW 775
Query: 121 IMMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIH 180
I +C+ T +SV VN E++G RGLRQG LS YL++IC LS ++ KA I
Sbjct: 776 IELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKIS 835
Query: 181 GVKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSR 240
C N + +HL FADD +F I E + S I+ +KS IF +
Sbjct: 836 YHPRCRNMNL-THLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAG 894
Query: 241 NGSQSKQLNIPNILQVQAVLGT--GKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKC 298
+K + Q LGT KYLGLP +T R ++ + + ++I +I SW+++
Sbjct: 895 ISPNAK---TSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRF 951
Query: 299 LSKAGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWD 358
LS AGR L+KS+L SI +++S+F LP + EIEKM ++F W + ++W
Sbjct: 952 LSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAK-IAWS 1010
Query: 359 RLAAHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFL----QS 414
+ K +GG+ K L N L K WR ++ D+L + + F +
Sbjct: 1011 EVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENT 1070
Query: 415 SLGHNPSYVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWI-AGDITLIPPTVGDFHL- 472
LG S++WR + + + R + G S W++ W G + + G L
Sbjct: 1071 GLG---SWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLG 1127
Query: 473 --SHLRVSHCMLQH-HKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEY 529
++ V+ M H K FL I Q +A + S DR +W ++ +
Sbjct: 1128 IPNNATVAEVMNTHRRKRHRADFLNQIKSQIELARQDR-----STDGDRSLWKQKEDTFK 1182
Query: 530 SVRSAYRLCMQKLLDISEFKVLGAW-DYIWNLKVPPKVKNLVWRVARNILPTRMRLREKI 588
S S+ + Q I + W +W PK + W N L T ++ +
Sbjct: 1183 SSFSSSKTWQQ----IRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWN 1238
Query: 589 VNCPPHCVLCNSADEDSLHLFFNCPSSSNIW--------NLSNLSNDVKIVVSQGLNSSA 640
CV C E HLFF+CP SS++W N N+ N ++ L+SS
Sbjct: 1239 SGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTKGLLNGRNILN-WNLITPHLLDSSR 1297
Query: 641 VIFHLLQVLSAGESALFATILWSIWKQRN 669
H+ + A F + S+W++RN
Sbjct: 1298 PYLHVFTLRYA-----FQASIHSLWRERN 1321
>At4g02490
Length = 657
Score = 261 bits (667), Expect = 1e-69
Identities = 179/635 (28%), Positives = 300/635 (47%), Gaps = 56/635 (8%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I LIPK + +RP+A C +YK+ ++++ RL +D+ + NQ F+ GR +
Sbjct: 53 TAITLIPKVPGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQAVQSNQVGFIKGRLL 112
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
+N + A ELV + + ++G ++D++KAYD ++W +L ++ + ++ WI
Sbjct: 113 CENVLLASELVDNFQAEGDTSRG--CLQVDLTKAYDNVNWEFLINILKALNLPPIFINWI 170
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
+C+ T YS+ N E+ G + +G+RQGDP+S++LF++ + L+ + G
Sbjct: 171 WVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVL 230
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
C AP+++HL FADD +F S + + +IL+V + SG IN QK+ +
Sbjct: 231 HPKC-LAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGG 289
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ ++ ++ Q L +YLG+P M+ + KK + + DRI + SW+++ LS
Sbjct: 290 NFERNRIMAASLGVSQGSLPV-RYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSF 348
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AGR L+KS++ S ++ SIF LP ++E+M N+F W + R +SWD +
Sbjct: 349 AGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLWSGAPNSAREAK-ISWDIVC 407
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+ K GG+ K L +N + K W T +L +
Sbjct: 408 SSKESGGLGLKRLSSWNKVLALKLIWLLFTASGSLWVSWVR------------------- 448
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLI-------PPTVGDFHLSH 474
+VWR LC + + + +G G T W + W G LI P VG LS
Sbjct: 449 WVWRKLCKLREVARPFVICEVGSGITARFWQDNW-TGHGPLIHLTGLTGPQLVG---LSI 504
Query: 475 LRVSHCMLQHHKMWDVPFLETIFDQQTVAAIIKT------SLYTSIKEDRFVW---NKEN 525
V +++ W + + + V ++K+ +L +D ++W ++
Sbjct: 505 TSVVRDAIRNDDWW----IASSRSRNPVILLLKSLLPPVGNLVDCEHDDSYLWKVGDRVP 560
Query: 526 NGEYSVRSAYRLCMQKLLDISEFKVLGAW-DYIWNLKVPPKVKNLVWRVARNILPTRMRL 584
+ ++S +R + F V +W +W PK + W A N L TR RL
Sbjct: 561 SSKFSTADTWRA-------LQPFSVSVSWHKAVWFTNQVPKHAFISWVTAWNRLHTRDRL 613
Query: 585 REKIVNCPPHCVLCNSADEDSLHLFFNCPSSSNIW 619
R + P CVLCN DE HLFF C SS IW
Sbjct: 614 RSWGLIVPAECVLCNLVDETRDHLFFACRFSSRIW 648
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,576,213
Number of Sequences: 26719
Number of extensions: 878624
Number of successful extensions: 2245
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1780
Number of HSP's gapped (non-prelim): 198
length of query: 881
length of database: 11,318,596
effective HSP length: 108
effective length of query: 773
effective length of database: 8,432,944
effective search space: 6518665712
effective search space used: 6518665712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC138579.1