BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138464.7 - phase: 0
(302 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24090 acidic endochitinase (dbj|BAA21861.1) 284 5e-77
At4g25940 putative protein destination factor 35 0.065
At5g64070 phosphatidylinositol 4-kinase (emb|CAB37928.1) 30 1.6
At2g34810 putative berberine bridge enzyme 28 4.7
At2g07240 hypothetical protein 28 4.7
At2g41880 guanylate kinase (GK-1) 28 6.1
At1g43245 putative protein 28 6.1
At3g55270 MAP kinase phosphatase (MKP1) 28 8.0
At3g46510 arm repeat containing protein homolog 28 8.0
>At5g24090 acidic endochitinase (dbj|BAA21861.1)
Length = 302
Score = 284 bits (726), Expect = 5e-77
Identities = 145/295 (49%), Positives = 197/295 (66%), Gaps = 8/295 (2%)
Query: 10 LLLLSISLTLFFQSTNAGDLVIYWGQDNGDGSLRDTCNTGLFNIVNIAFLSTFGSGRQPQ 69
L +S SL+ ++ G + IYWGQ+ +G+L TC TG + VN+AFL FG+G+ P+
Sbjct: 14 LFFISCSLSKPSDASRGG-IAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPE 72
Query: 70 LNLAGHCNPP--NCKNLRDSINICQSRGIKVMLSIGGEDRNTYSFSSPEDANQLADYIWN 127
LNLAGHCNP C + + CQSRGIKVMLS+GG N YS S EDA +ADY+WN
Sbjct: 73 LNLAGHCNPAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGN-YSIGSREDAKVIADYLWN 131
Query: 128 NFLGGNSPSRPFGDAILDGVDFDIEGGSKLHYETLALKLNDHYKSSRKKFYLTAAPLCIF 187
NFLGG S SRP GDA+LDG+DF+IE GS H++ LA L+ + +K YLT AP C F
Sbjct: 132 NFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWDDLARTLS-KFSHRGRKIYLTGAPQCPF 190
Query: 188 QDNILQTAINTGLFDYVWVQFYNSPGACNFVSNNPTSFKNSWSQWINSMSTKKVFVGLPA 247
D ++ +A+NT FDYVW+QFYN+P C++ S N + +SW++W S++ +K F+GLPA
Sbjct: 191 PDRLMGSALNTKRFDYVWIQFYNNP-PCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPA 249
Query: 248 SSSNAAPSGGFVEAQDLINQLLPIVKPSPKYGGVMLWNRRFDVTSGYSSKIKASV 302
+ A G++ L +Q+LP +K S KYGGVMLW++ +D +GYSS I ASV
Sbjct: 250 APE--AAGSGYIPPDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSSILASV 302
>At4g25940 putative protein destination factor
Length = 601
Score = 34.7 bits (78), Expect = 0.065
Identities = 35/130 (26%), Positives = 54/130 (40%), Gaps = 21/130 (16%)
Query: 36 DNGDGSLRDTCNT----GLFNIVNIAFLSTFGSGRQPQLNLAGHCN--------PPNCKN 83
+N + + R NT G N++ + + RQ QL AG+ + PPN
Sbjct: 451 NNNNNNPRPAPNTKLAGGFDNLLLDSLYEDDSARRQIQLTNAGYGHGGIDTTAAPPNPFQ 510
Query: 84 LRD-----SINICQSRGIKVMLSIGGEDRNTYSFSSPEDANQLADYIWNN----FLGGNS 134
++ S NI +++ + + + T SP + DY N+ F G S
Sbjct: 511 MQQDPFAMSNNIAPPTNVQMAMQQQQQQQMTMMHQSPYNYTHPHDYHQNHHHHQFSAGPS 570
Query: 135 PSRPFGDAIL 144
PS PFGDA L
Sbjct: 571 PSNPFGDAFL 580
>At5g64070 phosphatidylinositol 4-kinase (emb|CAB37928.1)
Length = 1121
Score = 30.0 bits (66), Expect = 1.6
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 210 NSPGACNFVSNNPTSFKNSWSQWINSMSTKKVFVGLPASSSNAAPSGGFVEAQDLINQLL 269
++PG+ N V N S K S T+K P+ +N G + A+D N++
Sbjct: 161 STPGSKNQVLNRLLSSKQKLFSLKLSPPTQKSLSFSPSPGTNVQDDGSQLPAED--NKIF 218
Query: 270 PIVKPSPKYGGVMLWNRRFDVTSGYSSK 297
+ PSPK +++ + D S K
Sbjct: 219 KKLIPSPKVRDALMFRKSADKDDEESEK 246
>At2g34810 putative berberine bridge enzyme
Length = 540
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 7/70 (10%)
Query: 47 NTGLFNIV-NIAFLSTFGSGRQPQLNLAGHCNPPNCKNLRDSINICQSRGIKVMLSIGGE 105
+T L N V N+ F S S R+P++ +A ++R +I+ C+ +++ + GG
Sbjct: 63 STNLMNGVRNLRFASV--STRKPEVIVAAVTET----HIRATISCCKLLNLELRIRSGGH 116
Query: 106 DRNTYSFSSP 115
D +S++SP
Sbjct: 117 DYEGFSYTSP 126
>At2g07240 hypothetical protein
Length = 928
Score = 28.5 bits (62), Expect = 4.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 95 GIKVMLSIGGEDRNTYSFSSPEDANQLADYIWNNFLGGNSPS 136
G++ GGE++N+ SSPE AN+ + +N PS
Sbjct: 334 GLQADKETGGEEQNSNPVSSPESANEYEESDFNPIPPPRQPS 375
>At2g41880 guanylate kinase (GK-1)
Length = 387
Score = 28.1 bits (61), Expect = 6.1
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 74 GHCNPPNCKNLRDSINICQSRGIKVMLSIGGEDRNTYSFSSPEDANQLADYIWNNFLG-- 131
GH N K+ ++ I G ++ L G +RN +S Q+ D I NN+
Sbjct: 15 GHSNGVCVKSEPENTEITVDVGDRIFLIGGTHERNNFSIGV-----QIYDKISNNWFSPI 69
Query: 132 ----GNSPSRPFGDAILD-GVDFDIEGGSKLHYETLALKLNDHYKSSRKK 176
G PS+ + +L+ G I+ GS + L+++ Y +KK
Sbjct: 70 VLGTGPKPSKGYSAFVLEQGRILVIKKGSPRNDSIWFLEVDSPYVREQKK 119
>At1g43245 putative protein
Length = 558
Score = 28.1 bits (61), Expect = 6.1
Identities = 17/63 (26%), Positives = 27/63 (41%), Gaps = 8/63 (12%)
Query: 171 KSSRKKFYLTAAPLCIFQDNILQTAINTGLF--------DYVWVQFYNSPGACNFVSNNP 222
+S+RK L A +C N ++ + GL + W+ SP +C NN
Sbjct: 133 RSNRKNTELEEAAICAVLTNAVEVHDSNGLALGIALYNSSFSWINHSCSPNSCYRFVNNR 192
Query: 223 TSF 225
TS+
Sbjct: 193 TSY 195
>At3g55270 MAP kinase phosphatase (MKP1)
Length = 732
Score = 27.7 bits (60), Expect = 8.0
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 23 STNAGDLVIYWGQDNGDGSLRDTCNTGLFNIVNIAFLSTFGSGRQPQLNLAGHCNPPNCK 82
STN+G+ + + Q +G SLR + L + + LS S P+ + +
Sbjct: 463 STNSGNSLKSFSQSSGRSSLRPSIPPSL-TLPKFSSLSLLPSQTSPKESRGVNTFLQPSP 521
Query: 83 NLRDSINICQSRG-IKVMLSIGG---EDRNTYSFS-SPEDANQLADYIWNNFLGGNSPSR 137
N + S ++ + RG +K L + G +R T +F+ P+D+N D ++N N
Sbjct: 522 NRKASPSLAERRGSLKGSLKLPGLADSNRGTPAFTLHPDDSN---DIVFNLEGIRNGDLY 578
Query: 138 PFGDAILDGVDFDIEGGSKLHYETLALKLNDHYKS 172
P D VD D+ K ++ +D +KS
Sbjct: 579 PPSDCKGTSVDSDLP--EKEIISLISCSKSDRHKS 611
>At3g46510 arm repeat containing protein homolog
Length = 660
Score = 27.7 bits (60), Expect = 8.0
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 107 RNTYSFSSPEDANQLADYIWNNFLGGNSPSR 137
R SFSSP +AN++ D +W G R
Sbjct: 340 RKVSSFSSPAEANKIEDLMWRLAYGNPEDQR 370
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,442,680
Number of Sequences: 26719
Number of extensions: 337184
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 9
length of query: 302
length of database: 11,318,596
effective HSP length: 99
effective length of query: 203
effective length of database: 8,673,415
effective search space: 1760703245
effective search space used: 1760703245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC138464.7