BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138464.5 + phase: 0 
         (235 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g14250 unknown protein                                             182  1e-46
At4g33210 unknown protein                                              31  0.50
At1g12370 putative type II CPD photolyase                              31  0.50
At4g27460 unknown protein                                              28  5.5
At1g78720 hypothetical protein                                         28  5.5
At5g04480 unknown protein                                              27  9.4
At2g02680 hypothetical protein                                         27  9.4

>At5g14250 unknown protein
          Length = 429

 Score =  182 bits (463), Expect = 1e-46
 Identities = 92/184 (50%), Positives = 126/184 (68%), Gaps = 1/184 (0%)

Query: 1   MDPLEPLIAQIQGLSSSSADIARLHTILKHSDETLRSDSSRLYPILQLIDPSIHSLGFLY 60
           ++ +E +I  IQGLS S  D++ LH +L+ + ++LR++    +  L  +D S HSLG+LY
Sbjct: 5   VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query: 61  LLDAFSAASVSNQQQAEEAVPIIARFINACSVEQIRLAPEKFVSVCKRLKDLVTLLEAPI 120
            L+  +   VS ++ A E +PIIARFIN+C   QIRLA  KFVS+CK LKD V  L  P+
Sbjct: 65  FLEVLTCGPVSKEKAAYE-IPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPL 123

Query: 121 RGVAPMFTALRKLQVSAEHLTPLHAEFLMLCLLAKCYKTGLSILDDDVFEVDHPRDLYLY 180
           RGV P+  A++KLQVS++ LT LH + L LCL AK YK+G SIL DD+ E+D PRD +LY
Sbjct: 124 RGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLY 183

Query: 181 CYYG 184
            YYG
Sbjct: 184 SYYG 187


>At4g33210 unknown protein
          Length = 990

 Score = 31.2 bits (69), Expect = 0.50
 Identities = 38/153 (24%), Positives = 63/153 (40%), Gaps = 11/153 (7%)

Query: 32  DETLRSDSSRLYPILQLIDPSIHSL-GFLYLLDAFSAASVSNQQQAEEAVPIIARFINAC 90
           D+   SD+      + L D  +H +  FL  +D   +A V  Q +   A     R +N  
Sbjct: 180 DDNGSSDTEDFEVHIDLTDDLLHMVFSFLNHVDLCRSAMVCRQWRVASAHEDFWRVLN-- 237

Query: 91  SVEQIRLAPEKFVSVCKRLKDL--VTLLEAPIRGVAPM--FTALRKLQV---SAEHLTPL 143
             E IR++ E+F ++C R  +   V +  AP      M   T LR L+V      H++  
Sbjct: 238 -FENIRISMEQFENMCSRYPNATEVNVYGAPAVNALAMKAATTLRNLEVLTIGKGHISES 296

Query: 144 HAEFLMLCLLAKCYKTGLSILDDDVFEVDHPRD 176
             + L  C + +      +IL +   E+    D
Sbjct: 297 FFQALGECNMLRSVTVSDAILGNGAQEIHLSHD 329


>At1g12370 putative type II CPD photolyase
          Length = 490

 Score = 31.2 bits (69), Expect = 0.50
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 18/106 (16%)

Query: 47  QLIDPSIHSLGFL--------YLLDAFSAASVSNQQQAEEAVPIIARFINACSVEQI--R 96
           Q +D     LGF+        + +D+        Q  A+E +P    F+  C    +   
Sbjct: 69  QFLDAKARQLGFMLKGLRQLHHQIDSLQIPFFLLQGDAKETIP---NFLTECGASHLVTD 125

Query: 97  LAPEKFVSVCK-----RLKDLVTLLEAPIRGVAPMFTALRKLQVSA 137
            +P + +  CK     R  D + + E     V PM+ A  KL+ SA
Sbjct: 126 FSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSA 171


>At4g27460 unknown protein
          Length = 391

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DPLEPLIAQIQGLSSSSADIARLHTILKHSDETLRSDSSRLYP---ILQLIDPSIHS--- 55
           DP   LI +I  ++ +  D      +   S   L +      P   ++Q++   +     
Sbjct: 230 DPFTSLIGEISPMTLTCCDETAAAAVATLSAGDLMAYIDGANPPESLVQIVRNRLEDKGL 289

Query: 56  LGFLYLLDAFSAASVSNQQQAEEAVPIIARFINACSVEQIRLAPEKFVSVCKRLKDLVTL 115
           +G + L D+ S+ S S+   +EE  P+             R+A +    VC     L+ +
Sbjct: 290 IGLMSLFDSLSSYSTSSGYSSEEEAPVRTTSYGRSMSSSARMARKSEAIVCNPKSSLMAV 349

Query: 116 L 116
           +
Sbjct: 350 M 350


>At1g78720 hypothetical protein
          Length = 475

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 119 PIRGVAPMFTALRKLQVSAEHLTPLHAEFLMLCLLAKC 156
           P+ G+A   TA   L   A H  P HA F ++ +LA C
Sbjct: 338 PVGGIAYYITAPSSLAEMATH--PFHALFYLVFMLAAC 373


>At5g04480 unknown protein
          Length = 1050

 Score = 26.9 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 4/48 (8%)

Query: 159  TGLSILDDDVFEV----DHPRDLYLYCYYGCVAFFFSFELEKRDRCRI 202
            T L  +D+D+ E     DHPR+ +L+   G V +   +E E+ +R R+
Sbjct: 976  TLLKSMDEDLAEAADDKDHPRERWLWPLTGEVHWKGVYEREREERYRL 1023


>At2g02680 hypothetical protein
          Length = 649

 Score = 26.9 bits (58), Expect = 9.4
 Identities = 17/72 (23%), Positives = 29/72 (39%), Gaps = 14/72 (19%)

Query: 176 DLYLY--CYYGCVAFFFS-----------FELEKRDRCRICSYISVLHFSYI-TYCNFFN 221
           D+Y++  C    + FF             F  +    C IC  +  LHF+Y+   C+F  
Sbjct: 211 DMYMHTLCAQAVIPFFIDQPKRHAHILTLFPRQASLTCNICGVLDELHFTYVCPICDFVT 270

Query: 222 ILDLFFTSFSIK 233
             D  +   +I+
Sbjct: 271 HADCIYIPQTIR 282


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.329    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,995,586
Number of Sequences: 26719
Number of extensions: 198394
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 7
length of query: 235
length of database: 11,318,596
effective HSP length: 96
effective length of query: 139
effective length of database: 8,753,572
effective search space: 1216746508
effective search space used: 1216746508
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)