BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138453.6 - phase: 0 /pseudo
(667 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32590 hypothetical protein, 5' partial 44 2e-04
At3g59720 copia-type reverse transcriptase-like protein 41 0.002
At1g58140 hypothetical protein 41 0.002
At1g48710 hypothetical protein 41 0.002
At3g61330 copia-type polyprotein 41 0.002
At2g21460 putative retroelement pol polyprotein 41 0.002
At1g37110 38 0.016
At2g05960 putative retroelement pol polyprotein 37 0.027
At2g05390 putative retroelement pol polyprotein 37 0.035
At2g23330 putative retroelement pol polyprotein 36 0.061
At4g04380 putative polyprotein 36 0.079
At3g25450 hypothetical protein 36 0.079
At2g14930 pseudogene 36 0.079
At2g07550 putative retroelement pol polyprotein 36 0.079
At1g31210 putative reverse transcriptase 35 0.10
At2g17490 putative retroelement pol polyprotein 35 0.13
At4g04410 putative polyprotein 35 0.18
At2g15700 copia-like retroelement pol polyprotein 35 0.18
At2g13930 putative retroelement pol polyprotein 35 0.18
At4g28900 putative protein 33 0.39
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +FD++C+E+GI+ QQNGV ERK + + + + +K + +Q
Sbjct: 533 SREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQY 592
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
+LN PS+ ++ TP E W
Sbjct: 593 AVYILNRSPSKALNDITPEEKW 614
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F K+CE+ GI Q QNGV ERK + L + K++ ++ + +
Sbjct: 603 SKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAC 662
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN P++ + KTP E W
Sbjct: 663 AVYLLNRSPTKSVSGKTPQEAW 684
>At1g58140 hypothetical protein
Length = 1320
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F K+CE+ GI Q QNGV ERK + L + K++ ++ + +
Sbjct: 603 SKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAC 662
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN P++ + KTP E W
Sbjct: 663 AVYLLNRSPTKSVSGKTPQEAW 684
>At1g48710 hypothetical protein
Length = 1352
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F K+CE+ GI Q QNGV ERK + L + K++ ++ + +
Sbjct: 603 SKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAC 662
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN P++ + KTP E W
Sbjct: 663 AVYLLNRSPTKSVSGKTPQEAW 684
>At3g61330 copia-type polyprotein
Length = 1352
Score = 40.8 bits (94), Expect = 0.002
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F K+CE+ GI Q QNGV ERK + L + K++ ++ + +
Sbjct: 603 SKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVAC 662
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN P++ + KTP E W
Sbjct: 663 AVYLLNRSPTKSVSGKTPQEAW 684
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 40.8 bits (94), Expect = 0.002
Identities = 27/101 (26%), Positives = 43/101 (41%), Gaps = 8/101 (7%)
Query: 98 NNDFDKFCEEYGI--------EHQQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N FD+FC + GI QQNGV ER + + + + + +K +
Sbjct: 552 NRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHT 611
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFI 190
IL+N PS ++ + P + W + IY R AF+
Sbjct: 612 TAILINKTPSSALNYEVPDKRWSGKSPIYSYLRRFGCIAFV 652
>At1g37110
Length = 1356
Score = 38.1 bits (87), Expect = 0.016
Identities = 27/109 (24%), Positives = 46/109 (41%), Gaps = 8/109 (7%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N+ FD +C+E+GIE QQNGV ER + + + + + + +
Sbjct: 573 NSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAAT 632
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFILYNRLKEK 198
L+N P+ ++ P E W YK R A++ ++ K K
Sbjct: 633 AAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKLK 681
>At2g05960 putative retroelement pol polyprotein
Length = 1200
Score = 37.4 bits (85), Expect = 0.027
Identities = 22/80 (27%), Positives = 37/80 (45%), Gaps = 8/80 (10%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F FCEE GI QQNGV ER+ + L + + G+ ++
Sbjct: 525 SQEFQTFCEEEGIIRHLTAPYTPQQNGVVERRNRTLLGMTRSIMKHMSVPNYLWGEAIRH 584
Query: 150 CNILLNMLPSRVMHKKTPFE 169
L+N + +R + +TP+E
Sbjct: 585 ATYLINRVGTRALINQTPYE 604
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 37.0 bits (84), Expect = 0.035
Identities = 35/146 (23%), Positives = 65/146 (43%), Gaps = 17/146 (11%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F FC + GI QQNGV ER+ + L + K+ G+ ++
Sbjct: 529 SQEFQDFCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRH 588
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFILYNRLKEKNLIRSNCREFL 209
++N + +R + +TP+E V Q L VF I Y +++ +L + + R +
Sbjct: 589 STYIINRVGTRSLQNQTPYE---VFKQRKPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKM 645
Query: 210 LAIATLE------KLIEFSNLKMEKF 229
L E +L++ +N K+ K+
Sbjct: 646 LVYLGTEPGSKAYRLLDPTNRKIIKW 671
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 36.2 bits (82), Expect = 0.061
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 113 QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQKCNILLNMLPSRVMHKKTPFETWF 172
QQNG ERK + L + + + K G+ + L+N PS V+ KTP+E F
Sbjct: 654 QQNGRVERKHRHILNVARACLFQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLF 713
Query: 173 VTNQIYKV*RFLFVFAFILYNRLKEKN 199
Y + L F + Y ++ +N
Sbjct: 714 GERPSYDM---LRSFGCLCYAHIRPRN 737
>At4g04380 putative polyprotein
Length = 778
Score = 35.8 bits (81), Expect = 0.079
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 8/89 (8%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N FD FCEE GI+ QQNGV ER + + R + ++ ++ +
Sbjct: 464 NRMFDGFCEERGIQRHRTCPYTPQQNGVVERMNRTIMERVRSMLCDSRLPKRFWAEATHT 523
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIY 178
+L+N P + + P + W IY
Sbjct: 524 AVLLINKTPCSANNFEFPDKRWSGKAPIY 552
>At3g25450 hypothetical protein
Length = 1343
Score = 35.8 bits (81), Expect = 0.079
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+++F +FC + GI QQNGV ER+ + L + + G+ ++
Sbjct: 561 SHEFQEFCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRH 620
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFILYNRLKEKNLIRSNCREFL 209
L+N + +R + +TP+E + + L VF + Y +++ NL + + R +
Sbjct: 621 STYLINRVGTRSLSNQTPYEVFKHKKPNVE---HLRVFGCVSYAKVEVPNLKKLDDRSRM 677
Query: 210 L 210
L
Sbjct: 678 L 678
>At2g14930 pseudogene
Length = 1149
Score = 35.8 bits (81), Expect = 0.079
Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 9/84 (10%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+N F + +E GI+H QQNG+ ERK ++ R + K Q+ +
Sbjct: 580 SNRFLQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFT 639
Query: 150 CNILLNMLPSRVMHKK-TPFETWF 172
N L N+LP+ + TP++ F
Sbjct: 640 ANFLSNLLPTSALDSSTTPYQVLF 663
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 35.8 bits (81), Expect = 0.079
Identities = 25/101 (24%), Positives = 41/101 (39%), Gaps = 8/101 (7%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N FD FCE GI QQNGV ER + + + + + ++ +
Sbjct: 574 NKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHT 633
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFI 190
+L+N PS ++ + P + W +Y R AF+
Sbjct: 634 TVLLINKTPSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFV 674
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 35.4 bits (80), Expect = 0.10
Identities = 23/83 (27%), Positives = 35/83 (41%), Gaps = 8/83 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+N E+GI H QQNG+ ERK + + + QK +
Sbjct: 588 SNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFT 647
Query: 150 CNILLNMLPSRVMHKKTPFETWF 172
N ++N LPS V+ +P+E F
Sbjct: 648 ANYIINRLPSSVLKNLSPYEALF 670
>At2g17490 putative retroelement pol polyprotein
Length = 822
Score = 35.0 bits (79), Expect = 0.13
Identities = 22/82 (26%), Positives = 35/82 (41%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F +F E GIE Q QN V+ER+ + + + K + K + +
Sbjct: 295 SKEFSEFLEGNGIERQLTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKLWAEAVHV 354
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
N P+R + KTP E W
Sbjct: 355 AAYAQNRTPTRTLKNKTPLEAW 376
>At4g04410 putative polyprotein
Length = 1017
Score = 34.7 bits (78), Expect = 0.18
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
++ F ++ ++GI HQ QNGV ERK + + + + + +K G +
Sbjct: 505 SHKFKEYLAKHGIIHQTSCPYTPQQNGVAERKNRHLMEVERSMMFHTNVTKKFWGDAVMT 564
Query: 150 CNILLNMLPSRVMHKKTPFE 169
L+N P++V+ + FE
Sbjct: 565 ACYLINRTPTKVLQDVSTFE 584
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 34.7 bits (78), Expect = 0.18
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N FD C+E GI+ QQNGV+ER K + + + Q+ +
Sbjct: 457 NTQFDNLCKEDGIKRHRTCTYTPQQNGVSERMNKTIMDIVRSMLAETGMSQEFWAEATST 516
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
L+N P+ + K P E W
Sbjct: 517 AVYLINRTPNSFIGFKLPEEVW 538
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 34.7 bits (78), Expect = 0.18
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N+ F+KFC+E GI QQNG+ ER + + + + + +K +
Sbjct: 550 NHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAAST 609
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
L+N PS ++ P E W
Sbjct: 610 AVYLINRSPSTAINFDLPEEKW 631
>At4g28900 putative protein
Length = 1415
Score = 33.5 bits (75), Expect = 0.39
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+N F E GI QQNG+ ERK + + K+ Q +
Sbjct: 558 SNQFVSHLAECGIRQLISCPYTPQQNGIAERKHRHITELGSSMMFQGKVPQFLWVEAFYT 617
Query: 150 CNILLNMLPSRVM-HKKTPFETWFVTNQIYKV*RFLFVFAFILYNRLK 196
N L N+LPS V+ +K+P+E +Y L VF Y L+
Sbjct: 618 SNFLCNLLPSSVLKDQKSPYEVLMGKAPVY---TSLRVFGCACYPNLR 662
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.367 0.164 0.589
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,122,327
Number of Sequences: 26719
Number of extensions: 382188
Number of successful extensions: 2063
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2021
Number of HSP's gapped (non-prelim): 63
length of query: 667
length of database: 11,318,596
effective HSP length: 106
effective length of query: 561
effective length of database: 8,486,382
effective search space: 4760860302
effective search space used: 4760860302
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC138453.6