BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138131.5 + phase: 0 /partial
(155 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48930 cytosolic ribosomal protein S11 299 4e-82
At5g23740 40S ribosomal protein S11 290 2e-79
At4g30800 ribosomal protein S11 - like 287 2e-78
At1g49400 unknown protein 39 0.001
At3g18880 ribosomal protein, putative 35 0.021
At1g79850 30S ribosomal protein S17, chloroplast precursor (CS17) 33 0.080
At1g77140 unknown protein 27 3.4
At4g02060 PROLIFERA 27 5.7
At1g50300 unknown protein 27 5.7
At1g30350 hypothetical protein 26 7.5
At4g30790 putative protein 26 9.8
At3g45170 putative protein 26 9.8
>At3g48930 cytosolic ribosomal protein S11
Length = 160
Score = 299 bits (766), Expect = 4e-82
Identities = 141/155 (90%), Positives = 149/155 (95%)
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFL SKKSGKGKRPGKGGNRF+K++GLGFKTPREAIDG Y+DKKCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGT 64
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VSIRGRILAGTCHSAKM RTI+VRR+YLHF+KKYQRYEKRHSNIPAHVSPCFRVKEGDH+
Sbjct: 65 VSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHI 124
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFTG
Sbjct: 125 IIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTG 159
>At5g23740 40S ribosomal protein S11
Length = 159
Score = 290 bits (742), Expect = 2e-79
Identities = 140/155 (90%), Positives = 147/155 (94%), Gaps = 1/155 (0%)
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFL SK SGKGKRPGKGGNRF+K++GLGFKTPREAIDG YID KCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGT 64
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VSIRGRILAGTCHSAKM RTI+VRRNYLHF+KKYQRYEKRHSNIPAHVSPCFRVKEGDHV
Sbjct: 65 VSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 124
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAFTG
Sbjct: 125 IIGQCRPLSKTVRFNVLKVIPAGASA-FGKKAFTG 158
>At4g30800 ribosomal protein S11 - like
Length = 159
Score = 287 bits (734), Expect = 2e-78
Identities = 138/155 (89%), Positives = 148/155 (95%), Gaps = 1/155 (0%)
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFL SKKSGKGKRPGKGGNRF+K++GLGFKTPREAI+GTYID+KCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGT 64
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VSIRGRIL+GTCHSAKM RTI+VRR+YLHF+KKY+RYEKRHSNIPAHVSPCFRVKEGD V
Sbjct: 65 VSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRV 124
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IGQCRPLSKTVRFNVLKVIPAGSSS GKKAFTG
Sbjct: 125 TIGQCRPLSKTVRFNVLKVIPAGSSS-IGKKAFTG 158
>At1g49400 unknown protein
Length = 116
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 70 GTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLS 129
GT S KM +++VV + L K Y RY KR S AH GD V + RPLS
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAH-DDKDACNIGDRVKLDPSRPLS 64
Query: 130 KTVRFNVLKVI 140
K + V ++I
Sbjct: 65 KNKHWIVAEII 75
>At3g18880 ribosomal protein, putative
Length = 105
Score = 34.7 bits (78), Expect = 0.021
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 66 RILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQC 125
+ + GT S KM ++VV + L Y RY KR S AH GD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAH-DEKDSCNIGDRVKLDPS 60
Query: 126 RPLSKTVRFNVLKVI 140
RPLSK + V ++I
Sbjct: 61 RPLSKHKHWIVSEII 75
>At1g79850 30S ribosomal protein S17, chloroplast precursor (CS17)
Length = 149
Score = 32.7 bits (73), Expect = 0.080
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 62 SIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVI 121
+++GR++ T ++T+ V L KY+R + AH P + K GD V
Sbjct: 52 TMQGRVVCATS-----DKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPDNQFKVGDVVR 105
Query: 122 IGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
+ + RP+SKT F L VI + A +KA G
Sbjct: 106 LEKSRPISKTKSFVALPVI-----ARAARKAEAG 134
>At1g77140 unknown protein
Length = 569
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 75 AKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVS 109
AK N+ I + F+ Y Y+K N+ HV+
Sbjct: 308 AKSNQNIQTVEDMARFVDNYPEYKKMQGNVSKHVT 342
>At4g02060 PROLIFERA
Length = 716
Score = 26.6 bits (57), Expect = 5.7
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 9/58 (15%)
Query: 41 TPREAIDGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYE 98
+P + ++ + I P+TG ++R ++A T A + HF KKY+ YE
Sbjct: 260 SPGDVVEFSGIFLPIPYTGFKALRAGLVADTYLEAT---------SVTHFKKKYEEYE 308
>At1g50300 unknown protein
Length = 372
Score = 26.6 bits (57), Expect = 5.7
Identities = 19/60 (31%), Positives = 27/60 (44%), Gaps = 5/60 (8%)
Query: 19 GKGKRPGKGGNRFFKSVGLGFKTPREAIDGTY--IDKKCPFTGNVSIRGRILAGTCHSAK 76
G G+ G+GG + G K P A G + D CP GNV+ R+ C++ K
Sbjct: 174 GAGRGRGRGGGADGGAPG---KQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICNTNK 230
>At1g30350 hypothetical protein
Length = 368
Score = 26.2 bits (56), Expect = 7.5
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 81 IVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVII 122
++V ++ L I Y+ + R + + PC R+++ HVII
Sbjct: 111 VIVLKSQL-MINSYKTIDGRGAKVEIANGPCLRIRQVKHVII 151
>At4g30790 putative protein
Length = 1148
Score = 25.8 bits (55), Expect = 9.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 82 VVRRNYLHFIKKYQRYEKRHSNI 104
V+ +N+L F+K+Y+ + HS++
Sbjct: 187 VIYQNFLEFMKRYKHQHRLHSDL 209
>At3g45170 putative protein
Length = 204
Score = 25.8 bits (55), Expect = 9.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 19 GKGKRPGKGGNRFFKSVGLGFKTPREAIDGTY--IDKKCPFTG 59
G+ P + GN+ + L FK+P + D + DK C G
Sbjct: 79 GRLHAPKRSGNKRGRQKRLSFKSPSDLFDSKFGITDKSCSHCG 121
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,138
Number of Sequences: 26719
Number of extensions: 160797
Number of successful extensions: 308
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 12
length of query: 155
length of database: 11,318,596
effective HSP length: 91
effective length of query: 64
effective length of database: 8,887,167
effective search space: 568778688
effective search space used: 568778688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC138131.5