BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138131.4 + phase: 0 /pseudo
(1189 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47910 reverse transcriptase, putative 411 e-114
At2g45230 putative non-LTR retroelement reverse transcriptase 392 e-109
At2g17910 putative non-LTR retroelement reverse transcriptase 385 e-107
At4g10830 putative protein 382 e-106
At3g45550 putative protein 379 e-105
At2g31520 putative non-LTR retroelement reverse transcriptase 374 e-103
At2g25550 putative non-LTR retroelement reverse transcriptase 374 e-103
At2g05200 putative non-LTR retroelement reverse transcriptase 372 e-103
At2g01840 putative non-LTR retroelement reverse transcriptase 372 e-103
At1g24640 hypothetical protein 372 e-103
At2g11240 pseudogene 369 e-102
At2g17610 putative non-LTR retroelement reverse transcriptase 368 e-101
At4g09710 RNA-directed DNA polymerase -like protein 368 e-101
At2g16680 putative non-LTR retroelement reverse transcriptase 355 1e-97
At2g41580 putative non-LTR retroelement reverse transcriptase 352 6e-97
At3g31420 hypothetical protein 348 8e-96
At2g31080 putative non-LTR retroelement reverse transcriptase 290 3e-78
At3g32110 non-LTR reverse transcriptase, putative 282 9e-76
At4g15590 reverse transcriptase like protein 265 1e-70
At1g31030 F17F8.5 218 1e-56
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 411 bits (1056), Expect = e-114
Identities = 210/481 (43%), Positives = 292/481 (60%), Gaps = 1/481 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK VL ISE QSAFV GR I DN++ A E+ H ++ +A+K D+SKAYD+
Sbjct: 308 RLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQ 367
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN++ ++ KMGF E+WI WIM C+ TV Y VL+NG G IIP RGLRQGDPLSPYL
Sbjct: 368 VEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYL 427
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C E L A IRKAE + I G+KV +P +SHLLFADD F +AN + + IL
Sbjct: 428 FILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEIL 487
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
YE SGQ +N KS V + +I ILG+ + G G YLGLP +G SK
Sbjct: 488 KQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTK 547
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F+F++DR+ +IN WS+K LSK G+EV+IK V ++P Y MS F LP ++ ++ +
Sbjct: 548 VFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVA 607
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW +G + +G+HWM+WDKL K DGG+ F+N+ FN A+L KQ WR++T D+L A
Sbjct: 608 KFWWSSNG-DSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFA 666
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
+++K RYF + N +S ++PS+ WRS+ ++ ++ G ++G G SISVWN+ W+
Sbjct: 667 KVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPA 726
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLYPSVREDR 833
+ +L+V I WNI LL +F + V I + P+ ED
Sbjct: 727 QFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDT 786
Query: 834 L 834
L
Sbjct: 787 L 787
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 392 bits (1007), Expect = e-109
Identities = 202/487 (41%), Positives = 301/487 (61%), Gaps = 10/487 (2%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK +L ISE Q+AFV GR I DN++ A E++H + K + +A+K DISKAYDR
Sbjct: 524 RLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDR 583
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW +L + M +GF++ WI+ IM CV++V Y VL+NG G IIP RGLRQGDPLSPYL
Sbjct: 584 VEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYL 643
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F+IC E L +++ AE + I G+KV AP ISHLLFADD + + N ++ I+
Sbjct: 644 FVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRII 703
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
Y ASGQ VN KS + +++S + LG++ G G YLGLP SK A
Sbjct: 704 EEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVA 763
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
T +++KDR+ KK+ W S LS G+E+L+K V ++PTY MS F +P ++C +IE +M
Sbjct: 764 TLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMA 823
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW + +G+HW +W LS K GG+ FK + FN+A+LGKQ WR++T+ D+L+A
Sbjct: 824 EFWWKNK-KEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMA 882
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWM-- 771
+++K+RYF + + + LG PSF W+SI +++ ++K G R IG+G +I+VW + W+
Sbjct: 883 KVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGA 942
Query: 772 ---RNDVTIFPLDDVATTLANL--RVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLY 826
+ + V+ AN V D ++P+ + WN L++ +F + E+I++ L
Sbjct: 943 KPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILA--LR 1000
Query: 827 PSVREDR 833
P +E R
Sbjct: 1001 PGGKETR 1007
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 385 bits (989), Expect = e-107
Identities = 193/474 (40%), Positives = 286/474 (59%), Gaps = 2/474 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L +S QSAFVP R I DN++ A E+IH ++ + + +A K D+SKAYDR
Sbjct: 502 RLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDR 561
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW +L +M +GF+ +WI WIM+CV +V Y VL+NG G IIP RG+RQGDPLSP L
Sbjct: 562 VEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPAL 621
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C E L ++ KAE G I G++ + ++HLLFADD L +A + +++ L
Sbjct: 622 FVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCL 681
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
S Y + SGQ +NL KS +NV I + G+ GTGKYLGLP + SK+
Sbjct: 682 SQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRD 741
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F FIK+++ ++ W +K LS+ G+EVL+K + ++P Y MS F LP +LC ++ +M
Sbjct: 742 LFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMM 801
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW +S K+ IHW+SW +L++ K GG FK+L FN A+L KQ WR+L + +L +
Sbjct: 802 DFWW-NSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFS 860
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R++++RYF +F + G PS+ WRSI + +L G R IG+G VW + W+ +
Sbjct: 861 RVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHD 920
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIV-STPLY 826
PL+ +L+VS I P ++WN+ +L +F + VE I+ PL+
Sbjct: 921 GSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLF 974
>At4g10830 putative protein
Length = 1294
Score = 382 bits (980), Expect = e-106
Identities = 185/410 (45%), Positives = 269/410 (65%), Gaps = 1/410 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK LD +S+ Q+AF+PGR + DNVM A E++H +K + + + +A+K D+SKAYDR
Sbjct: 886 RLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDR 945
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN+L M GFSE WIKWIM V++V+Y VLVNG G I P RG+RQGDPLSPYL
Sbjct: 946 VEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYL 1005
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+CA+ L+ LI+ A GDI G+++ N P ++HL FADD F ++N+ Q ++++
Sbjct: 1006 FILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVF 1065
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+ KS V + NILG+++ G GKYLGLP GR K+
Sbjct: 1066 DVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRD 1125
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
FN+I +RV K+ +SWS+K LS AG+E+++K V S+P Y MS F LPL++ EIE ++
Sbjct: 1126 MFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLM 1185
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW + K+ I W++W +L KK+GG+ F++L FN A+L KQ WR++ ++L A
Sbjct: 1186 NFWW-EKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFA 1244
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSI 763
RI KARYF + +++ S+ W S+ ++K GSR+ +GDG ++
Sbjct: 1245 RIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>At3g45550 putative protein
Length = 851
Score = 379 bits (974), Expect = e-105
Identities = 186/410 (45%), Positives = 267/410 (64%), Gaps = 1/410 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L+ +S+ Q+AF+PGR I DNVM A EI+H +K++ + + +A+K D+SKAYDR
Sbjct: 145 RLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDR 204
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L M GF ++WI WIM+ V++V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 205 VEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYL 264
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C + LS LI+ + GDI GV++ N AP I+HL FADD F +AN+ Q ++++
Sbjct: 265 FILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVF 324
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+QKS V + + +L + G GKYLGLP GR KK
Sbjct: 325 DVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKE 384
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
FN+I DRV ++ SWS+K LS AG+E+L+K V ++P Y MS F LP + EIE ++
Sbjct: 385 MFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLM 444
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW SNK+GI W++W +L KK+GG+ F++L FN A+L KQ WRI+ ++L A
Sbjct: 445 NFWW-EKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFA 503
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSI 763
R+ KARYF + +++ S+ W S+ +L+ G+R+ IGDG +I
Sbjct: 504 RVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTI 553
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 374 bits (959), Expect = e-103
Identities = 181/412 (43%), Positives = 266/412 (63%), Gaps = 1/412 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L+ +S+ Q+AF+PGR I DNVM A E++H +K++ + + +A+K D+SKAYDR
Sbjct: 680 RLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDR 739
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L M GF +WI WIM+ V++V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 740 VEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYL 799
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C + LS LI + GD+ GV++ N AP I+HL FADD F +AN+ Q ++++
Sbjct: 800 FILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVF 859
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+QKS V + + IL + G GKYLGLP GR KK
Sbjct: 860 DVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKE 919
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +I DRV K+ ++WS++ LS AG+E+++K V ++P Y MS F LP + EIE ++
Sbjct: 920 MFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLM 979
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW SN++GI W++W +L KK+GG+ F++L FN A+L KQ WR++ ++L A
Sbjct: 980 NFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFA 1038
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISV 765
R+ KARYF + ++++ S+ W S+ +LK G+R IGDG +I +
Sbjct: 1039 RVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRI 1090
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 374 bits (959), Expect = e-103
Identities = 181/412 (43%), Positives = 266/412 (63%), Gaps = 1/412 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L+ +S+ Q+AF+PGR I DNVM A E++H +K++ + + +A+K D+SKAYDR
Sbjct: 906 RLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDR 965
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L M GF +WI WIM+ V++V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 966 VEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYL 1025
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C + LS LI + GD+ GV++ N AP I+HL FADD F +AN+ Q ++++
Sbjct: 1026 FILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVF 1085
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+QKS V + + IL + G GKYLGLP GR KK
Sbjct: 1086 DVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKE 1145
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +I DRV K+ ++WS++ LS AG+E+++K V ++P Y MS F LP + EIE ++
Sbjct: 1146 MFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLM 1205
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW SN++GI W++W +L KK+GG+ F++L FN A+L KQ WR++ ++L A
Sbjct: 1206 NFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFA 1264
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISV 765
R+ KARYF + ++++ S+ W S+ +LK G+R IGDG +I +
Sbjct: 1265 RVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRI 1316
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 372 bits (954), Expect = e-103
Identities = 185/451 (41%), Positives = 273/451 (60%), Gaps = 1/451 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
R++++L K ISE QSAFVPGR I DNV+ E++H ++ +A+K D+SKAYDR
Sbjct: 419 RMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDR 478
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L++V+ + GF WI W++ CV +V Y L+NG G ++P RGLRQGDPLSP L
Sbjct: 479 VEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCL 538
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C E LS L +A+ + GV+V N P ++HLLFADD F +++ K+ IL
Sbjct: 539 FILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEIL 598
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
S Y KASGQ++N KS S + + IL ++ GTGKYLGLP GR K+
Sbjct: 599 SRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRD 658
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F I D++ +K +SW+S+ LS+AG++V++K VL S+P Y MS F LP +LC +I+ ++
Sbjct: 659 IFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLT 718
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW +K W++W KL+ K GG+ F+++ N ++L K GWR+L ++L++
Sbjct: 719 RFWWDTKPDVRK-TSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLS 777
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
RI +Y +F E +L PS WRSI + ILK G W I +G +S+WN+ W+
Sbjct: 778 RILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSI 837
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWN 804
+ P+ +LRVS I N W+
Sbjct: 838 SKPLVPIGPALREHQDLRVSALINQNTLQWD 868
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 372 bits (954), Expect = e-103
Identities = 184/463 (39%), Positives = 278/463 (59%), Gaps = 23/463 (4%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L IS+ Q+AFVPG++I DNV+ A E++H +K + + G VA+K DISKAYDR
Sbjct: 886 RLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDR 945
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN+L +VM ++GF+ +W+KWIM+CV +V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 946 VEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYL 1005
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F+ CAE LS ++RKAE I+G+K+ + ISHLLFADD F RA+ +++ I
Sbjct: 1006 FLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIF 1065
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
YE+ASGQ +N KS + + + + +LG+ V G GKYLGLP +GR K
Sbjct: 1066 KKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVE 1125
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +I +V ++ W+ LS AG+E++IK + ++P Y M+ F LP +C+EI ++
Sbjct: 1126 LFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLIT 1185
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWWG + +G + FK+L FN A+L KQ WRILT +L+A
Sbjct: 1186 AFWWG-------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLA 1226
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+YK Y+P + + G + S+ W SI + K +L+ G R ++GDG + +W + W+
Sbjct: 1227 RLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWL-- 1284
Query: 774 DVTIFPLDDVATTL-ANLRVSDCIMPNQKSWNIPLLNSIFTEQ 815
T+ P L +++V+D N++ W+ + + +
Sbjct: 1285 -PTLPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPE 1326
>At1g24640 hypothetical protein
Length = 1270
Score = 372 bits (954), Expect = e-103
Identities = 184/467 (39%), Positives = 284/467 (60%), Gaps = 1/467 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ L + +S+ QSAFV R I DN++ A E++H +K+ + + +A+K D+SKAYDR
Sbjct: 487 RLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDR 546
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW+YLR ++ +GF +W+ WIM CV +V Y VL+N G II RGLRQGDPLSP+L
Sbjct: 547 VEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFL 606
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C EGL+ L+ KA+ G + G++ N P++ HLLFADD +A+ ++ ++ IL
Sbjct: 607 FVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKIL 666
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VY A+GQ +NL KS V I LG+ T G G YLGLP SK
Sbjct: 667 KVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVD 726
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
+++KDR+ +K++ W ++CLS+ G+EVL+K V ++P + MS F LP++ C+ +E M
Sbjct: 727 MLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMA 786
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
SFWW ++K IHW SW++L + K GG+ F+++ +FN A+L KQ WR+L D L++
Sbjct: 787 SFWWDSCDHSRK-IHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLS 845
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+ K+RYF +F ++ L PSF WRSI + +L G + ++GDG S+ VW + W+ +
Sbjct: 846 RLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDD 905
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHI 820
+ P L+V + P W+ +L+ +F + + I
Sbjct: 906 NGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRI 952
>At2g11240 pseudogene
Length = 1044
Score = 369 bits (946), Expect = e-102
Identities = 189/451 (41%), Positives = 269/451 (58%), Gaps = 1/451 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ +L + ISE QSAFVP R+ DNV+ E +H++K +A+K ++SKAYDR
Sbjct: 350 RLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDR 409
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
IEW++++ VM +MGF + WI WI+ C+ TV Y L+NG+ G + P RGLRQGDPLSP+L
Sbjct: 410 IEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFL 469
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FIIC+E LS L RKA+ G + G++V P ++HLLFADD F R++L + IL
Sbjct: 470 FIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCIL 529
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
YE+ASGQ +N KS SR ILG++ V G GKYLGLP M GR K+
Sbjct: 530 KKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRD 589
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
FN I DR+ ++ SWSS+ LS AG+ ++K VL S+PTY MS F L +SLC I+ +
Sbjct: 590 LFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALT 649
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW S ++KK + W++W K++ +KK+GG+ FK++ FN A+L K WRI+ ++
Sbjct: 650 HFWW-DSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLV 708
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
RI +Y +F + + S WR IC K ++K+ IG G VWN W+
Sbjct: 709 RILLGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPWLSL 768
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWN 804
+ P+ ++ V+ I KSW+
Sbjct: 769 STSSTPMGPALEQFKSMTVAQLICQTTKSWD 799
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 368 bits (945), Expect = e-101
Identities = 182/445 (40%), Positives = 278/445 (61%), Gaps = 4/445 (0%)
Query: 376 IFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDRIEWNYLRQVMDKMGFSEQWIKW 435
I DN++ A E+IH + K K VA KLDI+KA+D+IEW ++ +M +MGFSE+W W
Sbjct: 2 ITDNILIAHELIHSLHTK-KLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 436 IMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYLFIICAEGLSALIRKAEARGDIN 495
IM+C+ T Y +L+NG IIP RG+RQGDP+SPYL+++C EGLSALI+ + ++
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLH 120
Query: 496 GVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNILSVYEKASGQAVNLQKSEFFCSR 555
G K N P ISHLLFA D +F +A L + + N+L +YEKASGQAVN QKS +
Sbjct: 121 GFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGK 180
Query: 556 NVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKATFNFIKDRVWKKINSWSSKCLS 615
+ + ++ +LG+ G G+YLGLP +GR+K F+FI + +K+++W +K LS
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLS 240
Query: 616 KAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMNSFWWGHSGSNKKGIHWMSWDKL 675
AG+EVLIK ++ +IPTY MS F LP+ L +I M FWW ++ K I W++W KL
Sbjct: 241 PAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHK-IPWVAWSKL 299
Query: 676 SMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIARIYKARYFPRCNFFESELGHNP 735
+ KK GG++ ++L FN+A+L KQ WRIL Q +L+AR++KA+YFP+ +++
Sbjct: 300 NDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQS 359
Query: 736 SFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRNDVTIFPLDDVATTLANLRVSDC 795
S+ W+SI ++ G ++ G+G +I +W + W+ + P+ + + L+VSD
Sbjct: 360 SYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDL 419
Query: 796 IMPNQKSWNIPLLNSIFTEQIVEHI 820
++ + WN LL + + + HI
Sbjct: 420 LIEGR--WNEDLLCKLIHQNDIPHI 442
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 368 bits (944), Expect = e-101
Identities = 188/455 (41%), Positives = 275/455 (60%), Gaps = 13/455 (2%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ L + IS QSAFVPGR+I DNV+ EI+H +++ +A+K D+SKAYDR
Sbjct: 465 RLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDR 524
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
I+WN+L++V+ ++GF ++WI+W+M CV TV Y L+NG+ G ++P RGLRQGDPLSPYL
Sbjct: 525 IKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYL 584
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C E LS L RKA+ +G + G++V +P ++HLLFADD F + N + NIL
Sbjct: 585 FILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNIL 644
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
YE ASGQ++NL KS S + + L + G GKYLGLP GR K+
Sbjct: 645 KKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRD 704
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F+ I DR+ ++ +SWS + LS AG+++L+K VL S+P+Y M F LP SLC +I+ ++
Sbjct: 705 IFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLT 764
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW S +K+ + W+SWDKL++ +GG+ F+ + K WRIL + +L++
Sbjct: 765 RFWW-DSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLS 816
Query: 714 RIYKARYFPRCNFFESELGHNPSFV---WRSICKSKFILKAGSRWKIGDGTSISVWNNYW 770
R+ +Y +F + +PSF WR I + +L+ G W IG G SI+VW W
Sbjct: 817 RVLLGKYCNTSSFMDCSA--SPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAW 874
Query: 771 MRNDVTIFPLDDVATTLANLRVSDCIMPNQKSWNI 805
+ P+ T +L V D I + KSWN+
Sbjct: 875 LSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNV 909
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 355 bits (910), Expect = 1e-97
Identities = 175/468 (37%), Positives = 281/468 (59%), Gaps = 1/468 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
+LK L +S QSAF R I DN++ A EI+H ++ K + + K D+SKAYDR
Sbjct: 476 KLKKHLPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDR 535
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L++++ +GF+++WI WIM CV +V Y VL+NG G I P RG+RQGDP+SP+L
Sbjct: 536 VEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFL 595
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C E L ++++AE ++G++ + P ++HLLF DD L RA + ++M L
Sbjct: 596 FVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCL 655
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
S Y SGQ +N++KS V + I N G+ GTGKYLGLP + SK+
Sbjct: 656 SQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQD 715
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +IK+++ ++ W K LS+ G+E+L+K + ++P Y M+ F LP LC ++ +M
Sbjct: 716 LFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMM 775
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW + K IHW+ KL++ K GG FK+L FN A+L KQ WR+ + S ++++
Sbjct: 776 DFWWNSMEFSNK-IHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVS 834
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
+I+K+RYF +F + G PS+ WRSI + +L G + IG+G +VW + W+ +
Sbjct: 835 QIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFD 894
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIV 821
+ P++ + +++VS I P ++WN+ L +F E+ V+ I+
Sbjct: 895 GHSRRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIM 942
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 352 bits (904), Expect = 6e-97
Identities = 180/464 (38%), Positives = 277/464 (58%), Gaps = 1/464 (0%)
Query: 349 KF*QTRLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDIS 408
K RLK L +S QSAFV R + DN++ A EI+H+++ K + + K D+S
Sbjct: 248 KILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMS 307
Query: 409 KAYDRIEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDP 468
KAYDR+EW +L+ ++ +GF+ WI W+M+CV +V Y VL+NG G I P RGLRQGDP
Sbjct: 308 KAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDP 367
Query: 469 LSPYLFIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQK 528
LSP+LF++C E L ++ +AE G I+G++ P ++HLLFADD L +A+ + +
Sbjct: 368 LSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAE 427
Query: 529 MRNILSVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIG 588
+ + LS Y SGQ +N +KS V+ + I N G++T GTGKYLGLP
Sbjct: 428 IMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQ 487
Query: 589 RSKKATFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEI 648
SK+ F FIK+++ +++ W +K LS+ G+++L+K + + P Y M+ F L +LC ++
Sbjct: 488 GSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKL 547
Query: 649 EKMMNSFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQS 708
+M FWW +S +KK IHW+ KL + K GG FK+L FN A+L KQ R+ T S
Sbjct: 548 TSVMMDFWW-NSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDS 606
Query: 709 DTLIARIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNN 768
D+L+++I K+RY+ +F + G PS+ W+SI + +L +G + IG+G + VW +
Sbjct: 607 DSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVSGLKKIIGNGENTYVWMD 666
Query: 769 YWMRNDVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIF 812
W+ +D P L+VS I P ++WN+ +L +F
Sbjct: 667 NWIFDDKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDLF 710
>At3g31420 hypothetical protein
Length = 1491
Score = 348 bits (894), Expect = 8e-96
Identities = 177/418 (42%), Positives = 254/418 (60%), Gaps = 28/418 (6%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L I+E Q+AFVPGR I +N + A E+ + +K + + +ALK DI+KAYDR
Sbjct: 709 RLKKHLGGAITENQAAFVPGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDR 768
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L + M +MGF+ +WI+ IM CV V + VL+NG+ G I P RG+R GDPLSPYL
Sbjct: 769 LEWDFLEETMRQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYL 828
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+CAE LS +I++AE + G+++ P ISHLLFADD F AN
Sbjct: 829 FILCAEVLSHMIKQAEINKKLKGIRLSTQGPFISHLLFADDSIFFTLAN----------- 877
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
Q+S C+ P + + ++LG+ G GKYLGLP + KK
Sbjct: 878 -------------QRS---CTAIKEPDTKRRMRHLLGIHNEGGEGKYLGLPEQFNKKKKE 921
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
FN+I ++V K WS K LS+ G+EVL+K V ++P Y M++F L +C+EI+ ++
Sbjct: 922 LFNYIIEKVKDKTQGWSKKFLSQGGKEVLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLA 981
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW SG+ KG+HW +W ++S+ KK+GG+ FK L FNLA+LGKQ W +L + L+A
Sbjct: 982 RFWWS-SGNETKGMHWFTWKRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMA 1040
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWM 771
R+ + RYFP N + G SFVW+SI + +LK G R +GDG+ I+ W + W+
Sbjct: 1041 RVLRGRYFPETNVMNAVQGRRASFVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPWL 1098
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 290 bits (742), Expect = 3e-78
Identities = 168/473 (35%), Positives = 254/473 (53%), Gaps = 5/473 (1%)
Query: 353 TRLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYD 412
TRLK V+ K I Q++F+PGR DN++ E +H M+ K KG G + LKLD+ KAYD
Sbjct: 387 TRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRK-KGRKGWMLLKLDLEKAYD 445
Query: 413 RIEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPY 472
R+ W++L++ ++ G SE W IM+ V VL NG T +P RGLRQGDPLSPY
Sbjct: 446 RVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPY 505
Query: 473 LFIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNI 532
LF++C E L LI + + + + V +SH+ FADD LF A++ + + +R +
Sbjct: 506 LFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRV 565
Query: 533 LSVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKK 592
L + +ASGQ V+L+KS+ F S NVS + I+ G+ GKYLG+P + R K
Sbjct: 566 LERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNK 625
Query: 593 ATFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMM 652
TF + +RV ++ W + LS AGR L K VL SIP + MS LP+S D +++
Sbjct: 626 ETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYS 685
Query: 653 NSFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLI 712
+F WG S KK H +SW K+ K +GG+ ++ N A++ K GWR+L ++L
Sbjct: 686 RTFLWG-STMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLW 744
Query: 713 ARIYKARYFPRCNFFESELGHNP--SFVWRSICKS-KFILKAGSRWKIGDGTSISVWNNY 769
AR+ + +Y S L P S WRS+ + ++ G W GDG +I W +
Sbjct: 745 ARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDR 804
Query: 770 WMRNDVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVS 822
W+ + + D+ ++V+ WN+ +L E + ++S
Sbjct: 805 WLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLS 857
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 282 bits (721), Expect = 9e-76
Identities = 161/436 (36%), Positives = 242/436 (54%), Gaps = 13/436 (2%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK V++K I Q++F+PGR DN++ E++H M+ K KG G + LKLD+ KAYDR
Sbjct: 1064 RLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRK-KGVKGWMLLKLDLEKAYDR 1122
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
I W+ L + G W++WIM CVE +L NG T P RGLRQGDPLSPYL
Sbjct: 1123 IRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYL 1182
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C E L LI + A +K+ + P +SH+ FADD LF A++++ + +R +L
Sbjct: 1183 FVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVL 1242
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
+ ASGQ V+L+KS+ + S+NV K I+ G+K GKYLG+P + R K
Sbjct: 1243 EKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKE 1302
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
TF + R ++ W + LS AGR L K VL SI + MS LP S D ++K+
Sbjct: 1303 TFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSR 1362
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+F WG S KK H ++W ++ + +++GG+ ++ N A++ K GWR+L +L A
Sbjct: 1363 AFLWG-STLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWA 1421
Query: 714 RIYKARY----FPRCNFFESELGHNPSFVWRSI-CKSKFILKAGSRWKIGDGTSISVWNN 768
++ +++Y N+ ++ N S WRS+ + ++ W IGDG I W +
Sbjct: 1422 QVVRSKYKVGDVHDRNWTVAK--SNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTD 1479
Query: 769 YWMRN----DVTIFPL 780
W+ D +I PL
Sbjct: 1480 RWLSETPIADDSIVPL 1495
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 265 bits (677), Expect = 1e-70
Identities = 148/367 (40%), Positives = 205/367 (55%), Gaps = 19/367 (5%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK V+ K I Q++F+PGR FDN++ E +H M+ K KG G + LKLD+ KAYDR
Sbjct: 340 RLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDR 398
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
I W++L + ++ G SE WIK IM CV + +L NG T P RGLRQGDP+SPYL
Sbjct: 399 IRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYL 458
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C E L I A RGD + + P +SH+ FADD LF A++
Sbjct: 459 FVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASV---------- 508
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
Q V+L+KS+ F S NVS I G+ + GKYLG+P + R K
Sbjct: 509 -------AQKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKD 561
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
TF + +RV +++ W S+ LS AGR L K VL SIP + MS LP SL ++++K+
Sbjct: 562 TFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSR 621
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+F WG S K+ H +SW K+ K GG+ + N A+L K GWR+L +L A
Sbjct: 622 NFLWG-STVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWA 680
Query: 714 RIYKARY 720
R+ + +Y
Sbjct: 681 RVLRRKY 687
>At1g31030 F17F8.5
Length = 872
Score = 218 bits (556), Expect = 1e-56
Identities = 148/443 (33%), Positives = 233/443 (52%), Gaps = 26/443 (5%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEII---HHMKIKVKGNVGEVALKLDISKA 410
RLK++L + I+E QSAFV R + +N++ A E++ H I + A+K+DISKA
Sbjct: 196 RLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISAR-----CAIKIDISKA 250
Query: 411 YDRIEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLS 470
+D ++W++L + M FS +I WI C+ T + V VNG++ G RGLRQG LS
Sbjct: 251 FDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLS 310
Query: 471 PYLFIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMR 530
PYLF+IC + LS ++ KA C ++HL FADD + + +
Sbjct: 311 PYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLG-LTHLSFADDLMVLSDGKTRSIEGIL 369
Query: 531 NILSVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTG----KYLGLPSM 586
+ + K SG ++L+KS + + VSP + IA K + G +YLGLP +
Sbjct: 370 EVFDEFCKRSGLRISLEKSTLYMA-GVSPIIKQEIA----AKFLFDVGQLPVRYLGLPLV 424
Query: 587 IGRSKKATFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCD 646
R A ++ + +++ K+I +W+ + S AGR LIK VL SI ++++ F LP
Sbjct: 425 TKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIR 484
Query: 647 EIEKMMNSFWWGHS--GSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRI 704
EI+K+ +SF W S S+K I SWD + K +GG+ +NL N K WRI
Sbjct: 485 EIDKLCSSFLWSGSEMSSHKAKI---SWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRI 541
Query: 705 LTQSDTLIARIYKARYFPRCNFFES--ELGHNPSFVWRSICKSKFILKAGSRWKIGDGTS 762
++ S++L + + A Y R S + S++WR I K + + K+ SR ++G+G S
Sbjct: 542 ISNSNSLWTK-WVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGES 600
Query: 763 ISVWNNYWMRNDVTIFPLDDVAT 785
S W ++W + I + D T
Sbjct: 601 ASFWYDHWSAHGRLIDTVGDKGT 623
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.342 0.150 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,949,534
Number of Sequences: 26719
Number of extensions: 948467
Number of successful extensions: 3133
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2876
Number of HSP's gapped (non-prelim): 107
length of query: 1189
length of database: 11,318,596
effective HSP length: 110
effective length of query: 1079
effective length of database: 8,379,506
effective search space: 9041486974
effective search space used: 9041486974
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC138131.4