BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138017.8 - phase: 2 /pseudo
         (600 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g01940 translation initiation factor eIF-2 beta chain-like pr...    30  2.9

>At5g01940 translation initiation factor eIF-2 beta chain-like
          protein
          Length = 231

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 3  EVELID*SYTWLEKLDKSKHATKLLKKSTLR*NKIVKRQGSRKEKLNMQ*VMKSKHKEDN 62
          E+E+ID   +W+ K D SK   K  +K  +R + I  + G    + N+     S+  E +
Sbjct: 13 ELEVIDNDSSWVSKFDPSKKKKKKKQKPLIREDDIFFQNGGHFTEDNLPDCQSSRKFEPD 72

Query: 63 LG 64
           G
Sbjct: 73 YG 74


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.360    0.161    0.561 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,961,865
Number of Sequences: 26719
Number of extensions: 393748
Number of successful extensions: 1401
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 1
length of query: 600
length of database: 11,318,596
effective HSP length: 105
effective length of query: 495
effective length of database: 8,513,101
effective search space: 4213984995
effective search space used: 4213984995
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 63 (28.9 bits)