Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138015.15 + phase: 0 /pseudo
         (821 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g25485 unknown protein                                              97  4e-20
At1g23990 reverse transcriptase, putative                              97  4e-20
At1g31030 F17F8.5                                                      92  2e-18
At4g12180 putative reverse transcriptase                               89  1e-17
At2g23880 putative non-LTR retroelement reverse transcriptase          89  1e-17
At4g14470 reverse transcriptase like protein                           85  1e-16
At1g47850 hypothetical protein                                         84  3e-16
At2g04760 putative non-LTR retroelement reverse transcriptase          83  7e-16
At3g44650 putative protein                                             82  9e-16
At4g26360 putative protein                                             82  2e-15
At2g28980 putative non-LTR retroelement reverse transcriptase          81  2e-15
At2g01550 putative non-LTR retroelement reverse transcriptase          80  4e-15
At2g14430 putative non-LTR retroelement reverse transcriptase          80  6e-15
At2g17610 putative non-LTR retroelement reverse transcriptase          78  2e-14
At4g02490                                                              77  3e-14
At1g25430 hypothetical protein                                         77  3e-14
At2g05980 putative non-LTR retroelement reverse transcriptase          76  7e-14
At1g31100 hypothetical protein                                         76  9e-14
At2g18820 putative non-LTR retroelement reverse transcriptase          75  1e-13
At2g41580 putative non-LTR retroelement reverse transcriptase          74  4e-13

>At3g25485 unknown protein
          Length = 979

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 86/384 (22%), Positives = 160/384 (41%), Gaps = 47/384 (12%)

Query: 134 LHTNLLTNIWFKLKALKKDLKELNSTHFQGTTKKVEDARTALVDVQRQLSSDPMNLDLIE 193
           + T+ +     KLKALK  +++L         K+ ++A   L   Q +    P    +IE
Sbjct: 235 MSTSTMFRFTKKLKALKPKIRQLAKEKMGNLVKRTKEAHDTLCQKQEENLKSPSPQAMIE 294

Query: 194 AEKVCLSSLKKW---STIEEQIWI*KSRANWIQLGDSTQNFSMPLQRKEDVRISLSSS*Q 250
             +    + +KW   + IEE+    KS+ +W+Q+GD             D   +     Q
Sbjct: 295 ETE----AHEKWELLAEIEEKYLKQKSKLHWMQVGDKNNKTFHRALVPNDFEGATLEELQ 350

Query: 251 KMAPKLTSITSSRRRLEGSI*N*WVVLLIRYLWWTKISSREVLCYLSISKTCCAQSSQPW 310
            + P   +     R +E                   ++  E+   L    +  +     +
Sbjct: 351 VLLPFRCTAEDRSRLME------------------PVTGEEIKTVLFFMSSDKSPGPDGF 392

Query: 311 RSKMRYSPWILLRLQ-VLMVTVFVSLNALGTLLVIVSLMLY*NSLRLVSCLILSTILM*L 369
            ++   + W ++  + ++ V  F     L                + V+  IL+ I    
Sbjct: 393 TTEFYKATWEIIGAEFIVAVKSFFEKGFLP---------------KGVNSTILALI---- 433

Query: 370 CYPKKLMIHQLRILGPLPVVQ*YIRLFPKF*QVECKES*IVLLVKINMLFVKGRVIFDNI 429
             PKK    +++   P+       ++  K      KE     +      FVK R++  N+
Sbjct: 434 --PKKFETKEMKDYRPISCCNVIYKVISKLIAKRLKEILPQFIAGNQSAFVKDRLLIQNL 491

Query: 430 ILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AMACLTT 489
           +L+ E+VK Y ++ +S RC +KID+ KA+ SV+  F+  ++  + F  +F++  M C+TT
Sbjct: 492 LLATEIVKDYHKESVSDRCAIKIDISKAFDSVQWSFLENVLHSLNFSQEFIHWIMLCITT 551

Query: 490 TSYTYNVNGDLTRPFAAKKGLRQG 513
            S++  VNG+L   F + +GLRQG
Sbjct: 552 ASFSVQVNGELVGFFNSSRGLRQG 575


>At1g23990 reverse transcriptase, putative
          Length = 657

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 44/95 (46%), Positives = 68/95 (71%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           FVK R++ +N++L+ ELVK Y ++ +S RC +KID+ KA+ SV+  FI  ++L M FP +
Sbjct: 14  FVKDRLLIENLLLATELVKDYHKESVSSRCAIKIDISKAFNSVQWSFIRNILLSMDFPME 73

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
           FV+  M C++T S++  VNG+L   F +K+GLRQG
Sbjct: 74  FVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQG 108


>At1g31030 F17F8.5
          Length = 872

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 50/142 (35%), Positives = 78/142 (54%)

Query: 372 PKKLMIHQLRILGPLPVVQ*YIRLFPKF*QVECKES*IVLLVKINMLFVKGRVIFDNIIL 431
           PKKL   ++R   P+       ++  K      K      + +    FVK R++ +N++L
Sbjct: 165 PKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLL 224

Query: 432 SHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AMACLTTTS 491
           + ELVK Y +  IS RC +KID+ KA+ SV+  F+   ++ M F   F++    C+TT S
Sbjct: 225 ATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTAS 284

Query: 492 YTYNVNGDLTRPFAAKKGLRQG 513
           ++  VNGDL   F +K+GLRQG
Sbjct: 285 FSVQVNGDLVGYFQSKRGLRQG 306


>At4g12180 putative reverse transcriptase
          Length = 662

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 2/151 (1%)

Query: 363 STILM*LCYPKKLMIHQLRILGPLPVVQ*YIRLFPKF*QVECKES*IVLLVKINMLFVKG 422
           STIL  +  PKK+   +++   P+       ++  K      K      +      F+K 
Sbjct: 29  STILALI--PKKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSAFIKD 86

Query: 423 RVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN* 482
           R++ +N++L+ ELVK Y +  +S RC +KID+ KA+ SV+  F+  ++L + FP +FV+ 
Sbjct: 87  RLLIENLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWSFLRNVLLTLDFPQEFVHW 146

Query: 483 AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
            M C+TT S++  VN +L   F + +GLRQG
Sbjct: 147 IMLCVTTASFSVQVNRELAGYFNSLRGLRQG 177


>At2g23880 putative non-LTR retroelement reverse transcriptase
          Length = 1216

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 2/151 (1%)

Query: 363 STILM*LCYPKKLMIHQLRILGPLPVVQ*YIRLFPKF*QVECKES*IVLLVKINMLFVKG 422
           STIL  +  PKK    +++   P+       +   K      K      +V     FVK 
Sbjct: 232 STILALI--PKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKD 289

Query: 423 RVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN* 482
           R++ +N++L+ ELVK Y +  IS RC +KID+ KA+ S++  F+ +++  M FP +F++ 
Sbjct: 290 RLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHW 349

Query: 483 AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
              C++T S++  VNG+L   F + +GLRQG
Sbjct: 350 ISLCMSTASFSIQVNGELAGYFRSARGLRQG 380


>At4g14470 reverse transcriptase like protein
          Length = 318

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 39/91 (42%), Positives = 62/91 (67%)

Query: 423 RVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN* 482
           R++ +N++L+ ELVK Y +  +S RC +KID+ KA+ SV+  F+  ++L + FP  FV+ 
Sbjct: 5   RLLIENLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWTFLKNVLLTLDFPQVFVHW 64

Query: 483 AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
            M C+TT S++  VNG+L   F + +GLRQG
Sbjct: 65  IMLCVTTASFSVQVNGELAGYFNSSRGLRQG 95


>At1g47850 hypothetical protein
          Length = 799

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 39/95 (41%), Positives = 63/95 (66%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           FV+ R++ +N++L+ ELVK Y +  ISPRC +KID+ KA+ SV+  F+   +  + FP  
Sbjct: 138 FVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPEN 197

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
           F +    C++T +++  VNG+L   F +K+GLRQG
Sbjct: 198 FCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQG 232


>At2g04760 putative non-LTR retroelement reverse transcriptase
          Length = 631

 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 40/95 (42%), Positives = 62/95 (65%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           FVK R++ +N++L+ ELVK Y +  ISPRC +KID+ KA+ SV+  F+   +  + FP K
Sbjct: 135 FVKERLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPEK 194

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
             +    C++T +++  VNG+L   F  K+GLRQG
Sbjct: 195 IRHWIKLCISTATFSVQVNGELAGFFGNKRGLRQG 229


>At3g44650 putative protein
          Length = 762

 Score = 82.4 bits (202), Expect = 9e-16
 Identities = 40/95 (42%), Positives = 61/95 (64%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           FVK R++ +N++L+ +LVK Y +  IS RC +KID+ KA  SV+  F+   +  M FP  
Sbjct: 118 FVKDRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEM 177

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
           F++    C+TT S++  VNG+L   F + +GLRQG
Sbjct: 178 FIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQG 212


>At4g26360 putative protein
          Length = 1141

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 41/96 (42%), Positives = 64/96 (65%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           F+ GR++ +N++L+ E+V  Y+ + IS R M+K+DL+KA+ SV   FI   +L +G P K
Sbjct: 537 FLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIAALLALGVPTK 596

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQGD 514
           F+N    C++T ++T +VNG     F + KGLRQGD
Sbjct: 597 FINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGD 632



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 35/128 (27%), Positives = 59/128 (45%), Gaps = 24/128 (18%)

Query: 137 NLLTNIWF--------------KLKALKKDLKELNSTHFQGTTKKVEDARTALVDVQRQL 182
           NL+ ++W+              KLKALKK +K+ +  ++    K+ E+A   L+  Q  L
Sbjct: 255 NLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKRTEEAHETLLSFQ-NL 313

Query: 183 SSDPMNLDLIEAEKVCLSSLKKW---STIEEQIWI*KSRANWIQLGDSTQNFSMPLQRKE 239
           + D  +L+    E   L + +KW   +T EE  +  +SR  W   GD    +     R  
Sbjct: 314 TLDNPSLENAAHE---LEAQRKWQILATAEESFFRQRSRVTWFAEGDGNTRY---FHRMA 367

Query: 240 DVRISLSS 247
           D R S+++
Sbjct: 368 DSRKSVNT 375


>At2g28980 putative non-LTR retroelement reverse transcriptase
          Length = 1529

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 37/95 (38%), Positives = 63/95 (65%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           FVK R++ +N++L+ ELVK Y ++ ++PRC +KID+ KA+ SV+  F+   +  + FP  
Sbjct: 862 FVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPET 921

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
           F +    C++T +++  VNG+L   F + +GLRQG
Sbjct: 922 FRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQG 956



 Score = 36.2 bits (82), Expect = 0.076
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 136 TNLLTNIWFKLKALKKDLKELNSTHFQGTTKKVEDARTALVDVQRQLSSDPMNLDLIEAE 195
           T+ L     KLK LK  L+EL         K+  +A   L + Q    ++P + + I  E
Sbjct: 578 TSALYRFSKKLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANP-SQETIAEE 636

Query: 196 KVCLSSLKKWSTIEEQIWI*KSRANWIQLGDSTQNF 231
               +     S +EE     KS+ +W+ +GD   ++
Sbjct: 637 LKAYTDWTHLSELEEGFLKQKSKLHWMNVGDGNNSY 672


>At2g01550 putative non-LTR retroelement reverse transcriptase
          Length = 1449

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 44/137 (32%), Positives = 74/137 (53%)

Query: 372  PKKLMIHQLRILGPLPVVQ*YIRLFPKF*QVECKES*IVLLVKINMLFVKGRVIFDNIIL 431
            PKKL   +++   P+       ++  K      K      +      FVK R++ +N++L
Sbjct: 933  PKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLL 992

Query: 432  SHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AMACLTTTS 491
            + ELVK Y +  IS RC +KID+ KA+ SV+  F+  ++  + FP +FV+  M C+TT S
Sbjct: 993  ATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTAS 1052

Query: 492  YTYNVNGDLTRPFAAKK 508
            ++  VNG+L   F + +
Sbjct: 1053 FSVQVNGELAGYFQSSR 1069



 Score = 35.4 bits (80), Expect = 0.13
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 133 NLHTNLLTNIWFKLKALKKDLKELNSTHFQGTTKKVEDARTALVDVQRQLSSDPMNLDLI 192
           ++ T+ L     KLKALK  L+ L         K+  +A  +L   Q+  S +P +   +
Sbjct: 693 HMSTSSLFRFTKKLKALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQQSNSQNP-SQRAM 751

Query: 193 EAEKVCLSSLKKWSTIEEQIWI*KSRANWIQLGD 226
           E E        + ++IEE+     S+ +W+++GD
Sbjct: 752 EIESEAYVRWDRIASIEEKYLKQVSKLHWLKVGD 785


>At2g14430 putative non-LTR retroelement reverse transcriptase
          Length = 1277

 Score = 79.7 bits (195), Expect = 6e-15
 Identities = 38/95 (40%), Positives = 62/95 (65%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           FV+ R++ +N++L+ ELVK Y +  ISPRC +KID+ KA+ SV+  F+   +  + FP K
Sbjct: 707 FVRERLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEK 766

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
           F +    C++T +++  VN +    F +K+GLRQG
Sbjct: 767 FRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQG 801


>At2g17610 putative non-LTR retroelement reverse transcriptase
          Length = 773

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 38/92 (41%), Positives = 60/92 (64%), Gaps = 1/92 (1%)

Query: 424 VIFDNIILSHELVKS-YSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN* 482
           +I DNI+++HEL+ S +++K + P    K+D+ KA+  +E  FI  +M +MGF  K+ N 
Sbjct: 1   MITDNILIAHELIHSLHTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60

Query: 483 AMACLTTTSYTYNVNGDLTRPFAAKKGLRQGD 514
            M C+TTT+Y+  +NG   R    K+G+RQGD
Sbjct: 61  IMTCITTTTYSILINGQPVRRIIPKRGIRQGD 92


>At4g02490
          Length = 657

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 38/102 (37%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           F+KGR++ +N++L+ ELV ++  +G + R  +++DL KAY +V   F+  ++  +  P  
Sbjct: 106 FIKGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINILKALNLPPI 165

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQGD-LSLHI 519
           F+N    C++T SY+   NG+L   F  KKG+RQGD +S H+
Sbjct: 166 FINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHL 207


>At1g25430 hypothetical protein
          Length = 1213

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 38/96 (39%), Positives = 61/96 (62%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           F+ GR + +N++L+ +LV  Y+   ISPR M+K+DL+KA+ SV   F+   +  +  P K
Sbjct: 559 FLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEK 618

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQGD 514
           F+N    C++T ++T ++NG     F + KGLRQGD
Sbjct: 619 FINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGD 654



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 16/109 (14%)

Query: 145 KLKALKKDLKELNSTHFQGTTKKVEDARTALVDVQRQLSSDPMNLDL---IEAEKVCLSS 201
           KLKALKK +K+ +  ++    K+ ++A   L+  Q +  +DP  ++    +EAE      
Sbjct: 285 KLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAE------ 338

Query: 202 LKKW---STIEEQIWI*KSRANWIQLGDSTQNFSMPLQRKEDVRISLSS 247
            +KW   +  EE  +  KSR +W   GD    +     R  D R S +S
Sbjct: 339 -RKWHILTAAEESFFRQKSRISWFAEGDGNTKY---FHRMADARNSSNS 383


>At2g05980 putative non-LTR retroelement reverse transcriptase
          Length = 1352

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 36/95 (37%), Positives = 63/95 (65%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           F+K R++ +N++L+ ELVK Y ++ IS R  +KID+ KA+  V+ PF+  ++  +  P  
Sbjct: 712 FIKDRLMMENLLLASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEM 771

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
           F++    C+ T S++  VNG+L+  F +++GLRQG
Sbjct: 772 FIHWIELCIGTASFSVQVNGELSGFFRSERGLRQG 806


>At1g31100 hypothetical protein
          Length = 1090

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 37/96 (38%), Positives = 63/96 (65%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           F+ GR + +N++L+ ELV+ Y+R+ I PR M+K+DL+KA+ S+   FI   +  +G P +
Sbjct: 474 FLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDR 533

Query: 479 FVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQGD 514
           FV     C++T +++  VNG+    F + +GLRQG+
Sbjct: 534 FVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGN 569



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/90 (27%), Positives = 45/90 (49%), Gaps = 7/90 (7%)

Query: 145 KLKALKKDLKELNSTHFQGTTKKVEDARTALVDVQRQLSSDPMNLDLIEAEKVCLSSLKK 204
           KLKALK  ++  +  +F    K+V++A   ++  Q +  SDP     I    + + + +K
Sbjct: 196 KLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDP----TIPNAALEMEAQRK 251

Query: 205 WSTI---EEQIWI*KSRANWIQLGDSTQNF 231
           W  +   EE  +  +SR  W+  GDS  ++
Sbjct: 252 WLILVKAEESFFCQRSRVTWMGEGDSNTSY 281


>At2g18820 putative non-LTR retroelement reverse transcriptase
          Length = 1412

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 33/80 (41%), Positives = 54/80 (67%)

Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCK 478
           F+  R++ +N++L+ ELVK Y + G+SPRC +KIDL KA+ SV+ PF+   +  +  P K
Sbjct: 831 FISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEK 890

Query: 479 FVN*AMACLTTTSYTYNVNG 498
           F++    C++T S++  VNG
Sbjct: 891 FIHWINLCISTASFSVQVNG 910


>At2g41580 putative non-LTR retroelement reverse transcriptase
          Length = 1094

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 47/145 (32%), Positives = 77/145 (52%), Gaps = 2/145 (1%)

Query: 372 PKKLMIHQLRILGPLPVVQ*YIRLFPKF*QVECKES*IVLLVKINMLFVKGRVIFDNIIL 431
           PK     ++  + P+ +     ++  K      K+   V++      FV  R++ DNIIL
Sbjct: 222 PKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIIL 281

Query: 432 SHELVKSY-SRKGISPRCMV-KIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AMACLTT 489
           +HE+V +  + + IS   MV K D+ KAY  VE PF+  ++L +GF   ++N  MAC+++
Sbjct: 282 AHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSS 341

Query: 490 TSYTYNVNGDLTRPFAAKKGLRQGD 514
            SY+  +NG         +GLRQGD
Sbjct: 342 VSYSVLINGQPFGHITPHRGLRQGD 366


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.348    0.153    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,864,524
Number of Sequences: 26719
Number of extensions: 597779
Number of successful extensions: 2349
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2214
Number of HSP's gapped (non-prelim): 107
length of query: 821
length of database: 11,318,596
effective HSP length: 108
effective length of query: 713
effective length of database: 8,432,944
effective search space: 6012689072
effective search space used: 6012689072
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 64 (29.3 bits)


Medicago: description of AC138015.15