BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137994.2 + phase: 0 /pseudo
         (379 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g26760 unknown protein                                              30  1.7
At2g25640 putative transcription elongation factor S-II                29  3.7
At2g14210 pseudogene                                                   29  4.9

>At4g26760 unknown protein
          Length = 578

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 7   NHGPIFHAESVKSYVRVDNLQEKYNEIQREMKALHRKEL-FGINAYDLCLV 56
           N+GP    E+  S  R+D+ Q K  E+Q+E     +K L F    +DLC V
Sbjct: 144 NNGPHVVDETDLSLKRLDDFQRKLQELQKEKSDRLQKVLEFVSTVHDLCAV 194


>At2g25640 putative transcription elongation factor S-II
          Length = 643

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 115 GYMGLDKSDISMI*ARLSSSNTTTTRTWP-QIETNCRP*LRMIKNPSKHMPNGGEISLHK 173
           G + L  S +S +   L S   TTT+ WP  +E   R  L   +   + +PN    ++  
Sbjct: 550 GVLQLSPSTVSSVIGILRSGEKTTTKEWPILLEIKGRVRLDAFEKFVRELPNSRSRAVMV 609

Query: 174 FVHLWT 179
           FV+ +T
Sbjct: 610 FVYTFT 615


>At2g14210 pseudogene
          Length = 234

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5   QQNHGPIFHAESVKSYVR-VDNLQEKYNEIQREMKALHRKELFGINAYDL 53
           ++ H  + HA  +K + R V +LQ++   +Q   + L  +EL G+NA DL
Sbjct: 75  EEQHQLLNHASEIKFWQREVASLQQQLQYLQECHRKLVGEELSGMNANDL 124


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.340    0.147    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,933,329
Number of Sequences: 26719
Number of extensions: 311393
Number of successful extensions: 963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 3
length of query: 379
length of database: 11,318,596
effective HSP length: 101
effective length of query: 278
effective length of database: 8,619,977
effective search space: 2396353606
effective search space used: 2396353606
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 61 (28.1 bits)