BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137829.8 - phase: 0
(123 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15780 unknown protein 136 2e-33
At1g15790 unknown protein (At1g15790) 91 2e-19
At3g30120 hypothetical protein 60 3e-10
At2g10440 hypothetical protein 49 8e-07
At1g64340 hypothetical protein 32 0.10
At4g14096 F-box protein - like 28 0.86
At3g12980 putative CREB-binding protein 28 0.86
At3g02140 unknown protein 28 1.1
At4g13960 hypothetical protein 27 1.9
At1g06630 unknown protein 27 1.9
At5g21990 unknown protein 27 3.3
At4g03680 hypothetical protein 27 3.3
At3g10400 hypothetical protein 27 3.3
At2g31970 putative RAD50 DNA repair protein 26 5.6
At1g79480 hypothetical protein 26 5.6
At5g18230 unknown protein 25 7.3
At5g62640 unknown protein 25 9.5
At3g57170 unknown protein 25 9.5
At2g36900 putative cis-Golgi SNARE protein 25 9.5
>At1g15780 unknown protein
Length = 1335
Score = 136 bits (343), Expect = 2e-33
Identities = 70/119 (58%), Positives = 87/119 (72%), Gaps = 15/119 (12%)
Query: 1 MVTNNWRPN-QGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKI 59
M NNWRP+ EP MDT DWR QL P+SRQ+IVNKIM+TLK+HLP SG EG++ELR+I
Sbjct: 1 MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
Query: 60 AQKFEDKIYTAATSQSDYLRKISLKMLTMETKSQ--------------GTIANNIPPNQ 104
A +FE+KI++ A +Q+DYLRKIS+KMLTMETKSQ GT ++IP NQ
Sbjct: 61 AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPTNQ 119
>At1g15790 unknown protein (At1g15790)
Length = 179
Score = 90.5 bits (223), Expect = 2e-19
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 18 TSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAATSQSDY 77
T DWR Q SR RIVNKIM+T + LP EG +ELRKIA +FE+K++ A++Q++Y
Sbjct: 4 TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
Query: 78 LRKISLKMLTMETKSQGTIANN--------IPPNQVGPSNQP 111
LR+I +KML METKSQ ++ + P P+N+P
Sbjct: 64 LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEP 105
Score = 81.6 bits (200), Expect = 9e-17
Identities = 39/76 (51%), Positives = 55/76 (72%)
Query: 13 EPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAAT 72
EP ++T DWR Q +SRQ+ +N ++DTLK+ +P SG+EG+ EL +IA E+ I+ +A
Sbjct: 104 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 163
Query: 73 SQSDYLRKISLKMLTM 88
+Q DYL KISLKM TM
Sbjct: 164 NQEDYLGKISLKMRTM 179
>At3g30120 hypothetical protein
Length = 750
Score = 60.1 bits (144), Expect = 3e-10
Identities = 35/117 (29%), Positives = 61/117 (51%), Gaps = 7/117 (5%)
Query: 5 NWRPN-QGAEPNMDTS--DWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQ 61
NW+PN QG + + DWR QL+PE RQ++++KI++ K P + +++ IA
Sbjct: 6 NWKPNEQGGDRAAANNCIDWRSQLEPELRQKVLSKIVEKFKEKFPTDEE---YKINDIAS 62
Query: 62 KFEDKIYTAATSQSDYLRKISLKMLTMETKSQGTIAN-NIPPNQVGPSNQPPYPGLH 117
KFE+K + AT + +++ + + I + N+ P+ + QPP P H
Sbjct: 63 KFEEKFFDIATDKVHGRQQLLPQQQQPQQPQMNQIRHGNLRPSHMQQQAQPPQPQHH 119
>At2g10440 hypothetical protein
Length = 935
Score = 48.5 bits (114), Expect = 8e-07
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 5 NWRPNQGAEPNMDTS----DWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60
NW+PN+ N D + DWR Q +PE RQ++++KI++ K + +++ IA
Sbjct: 6 NWKPNEQGG-NRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEE---YKINDIA 61
Query: 61 QKFEDKIYTAATSQS 75
KFE+ Y+ AT ++
Sbjct: 62 SKFEENFYSIATDKT 76
>At1g64340 hypothetical protein
Length = 265
Score = 31.6 bits (70), Expect = 0.10
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 24 QLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAATSQSDYLRKISL 83
+ + E ++I K +K HL + EGL + + I K T+++S S Y+ KI +
Sbjct: 14 ETKAEGEKKITKKDDMMIKGHLEII--EGLRQTKTIRDDQSSKSSTSSSSSSSYIMKIKI 71
Query: 84 KMLTMETKSQGTIANNIPPNQVGPSNQ 110
+ K+ + N + P N+
Sbjct: 72 GNCELSGKNSIQRSENTKMMETYPKNK 98
>At4g14096 F-box protein - like
Length = 468
Score = 28.5 bits (62), Expect = 0.86
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 1 MVTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHE 55
+++ WR PN+D D L PE+ + + MD + R L + G LH+
Sbjct: 35 VLSKKWRYLFAFVPNLDL-DESVYLNPENETEVSSSFMDFVDRVLALQGNSPLHK 88
>At3g12980 putative CREB-binding protein
Length = 1670
Score = 28.5 bits (62), Expect = 0.86
Identities = 17/81 (20%), Positives = 39/81 (47%), Gaps = 6/81 (7%)
Query: 30 RQRIVNKIMDTLKRHLPVSGQEGLH-ELRKIAQKFEDKIYTAATSQSDYLRKISLKMLTM 88
RQ ++N+ L++ P + +L ++A++ E ++ ATS+ DY L +
Sbjct: 44 RQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDY-----LDFRSF 98
Query: 89 ETKSQGTIANNIPPNQVGPSN 109
+ + + T+ + + PS+
Sbjct: 99 DVRVESTLKQLLSQRRANPSS 119
>At3g02140 unknown protein
Length = 319
Score = 28.1 bits (61), Expect = 1.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 43 RHLPVSGQEGLHELRKIAQKFEDKIYTAATSQSDYLRKISLKMLTMET-KSQGTIANNIP 101
R LPV + + + RK+++K + + T++ YL K + +ET K + + IP
Sbjct: 132 RSLPVVTEMDIEKERKVSEKTRAFMESPVTNRGAYLTKDKNRGQAVETEKPRAFLEFKIP 191
Query: 102 PNQVG 106
P + G
Sbjct: 192 PTKEG 196
>At4g13960 hypothetical protein
Length = 434
Score = 27.3 bits (59), Expect = 1.9
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 46 PVSGQEGLHELRKIAQKFEDKIYTAATSQSDYLRKISLKMLT 87
P G+E +E++K KF D++ A + ++K+SLK+ T
Sbjct: 54 PQEGKEDRYEIQKSFMKFVDRV--LALQGNSPIKKLSLKLRT 93
>At1g06630 unknown protein
Length = 403
Score = 27.3 bits (59), Expect = 1.9
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Query: 32 RIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAATSQSDY-LRKISLK 84
R + K++DTL+ VSG + F+D + Q DY +RK+SLK
Sbjct: 45 RTLFKLVDTLEFDDSVSGMGEQEASYVFPESFKDLVDRTVALQCDYPIRKLSLK 98
>At5g21990 unknown protein
Length = 554
Score = 26.6 bits (57), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 19 SDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEG 52
SD G++ PE R+R+ N + +LK + P S G
Sbjct: 370 SDMMGKMSPEERERMFN-MASSLKANAPASTSYG 402
>At4g03680 hypothetical protein
Length = 163
Score = 26.6 bits (57), Expect = 3.3
Identities = 18/68 (26%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Query: 33 IVNKIMDTLKRHLPVSGQEG--LHELRKIAQKFEDKIYTAATSQSDYLRKISLKMLTMET 90
I K + L + LP ++ L +KI+ +K AT+ D + KIS++ L+
Sbjct: 4 IAQKCLIQLFQELPQKKRKSGNLSNTKKISLSLREKTNDKATNNYDIVNKISIRRLSAVK 63
Query: 91 KSQGTIAN 98
+ I+N
Sbjct: 64 RMTRKISN 71
>At3g10400 hypothetical protein
Length = 261
Score = 26.6 bits (57), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 89 ETKSQGTIANNIPPNQVGPSNQPPYP 114
E +G ++ P NQ+GP +PP P
Sbjct: 156 ECGDEGHLSYECPKNQLGPRERPPPP 181
>At2g31970 putative RAD50 DNA repair protein
Length = 1292
Score = 25.8 bits (55), Expect = 5.6
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 45 LPVSGQEGLHELRKIAQKFEDKIYTAATSQSDYLRKISLKMLTMET 90
LP ++ + EL++ KFE+++ T +RK+ +M+ ET
Sbjct: 294 LPEENEDTIEELKEWKSKFEERLALLGTK----IRKMEREMVDTET 335
>At1g79480 hypothetical protein
Length = 356
Score = 25.8 bits (55), Expect = 5.6
Identities = 14/52 (26%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Query: 68 YTAATSQSDYLRKISLKMLTMETKSQGTIANNIPPNQVGPSNQPP---YPGL 116
Y+++++ Y +L + + ++ N PP + P N PP YPGL
Sbjct: 26 YSSSSNTQPYGVSTTLTLPPYVSLPPLSVPGNAPPFCINPPNTPPSSSYPGL 77
>At5g18230 unknown protein
Length = 843
Score = 25.4 bits (54), Expect = 7.3
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 4 NNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRH 44
+ WRP + +T R ++ P+ R++ + ++ + H
Sbjct: 473 SQWRPGSPFQSQNETVRGRTEIAPDQREKFLQRLQQVQQGH 513
>At5g62640 unknown protein
Length = 520
Score = 25.0 bits (53), Expect = 9.5
Identities = 10/16 (62%), Positives = 12/16 (74%)
Query: 101 PPNQVGPSNQPPYPGL 116
PP Q+ S+QPP PGL
Sbjct: 239 PPPQLPQSSQPPPPGL 254
>At3g57170 unknown protein
Length = 560
Score = 25.0 bits (53), Expect = 9.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 87 TMETKSQGTIANNIPPNQVGPSNQPPYPGLHL 118
++ T ++G ++ P+++G PP P LH+
Sbjct: 511 SLTTSARGVLSGKRMPSKLGLDLPPPRPWLHM 542
>At2g36900 putative cis-Golgi SNARE protein
Length = 225
Score = 25.0 bits (53), Expect = 9.5
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 15 NMDTSDWRGQLQPESRQ-RIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAATS 73
+MD+ D ++ + + R + MDTL R +PV Q L RK Q E+ Y S
Sbjct: 40 SMDSPDLASSVKRDITEVRSLCSNMDTLWRSIPVKSQRDLWR-RKTEQVGEEAEY-LNLS 97
Query: 74 QSDYLRKISLKMLTMETKS 92
Y+ + KML + ++
Sbjct: 98 LEKYMSRNQRKMLEAKERA 116
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.314 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,846,626
Number of Sequences: 26719
Number of extensions: 102122
Number of successful extensions: 261
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 21
length of query: 123
length of database: 11,318,596
effective HSP length: 87
effective length of query: 36
effective length of database: 8,994,043
effective search space: 323785548
effective search space used: 323785548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC137829.8