BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137667.10 + phase: 0 /pseudo
         (43 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g59810 U6 snRNA-associated Sm-like protein                          80  2e-16
At2g43810 putative small nuclear ribonucleoprotein polypeptide F       80  2e-16
At4g30220 snRNP Sm protein F - like                                    41  1e-04
At3g11500 putative small nuclear ribonucleoprotein polypeptide G       26  3.4
At2g23930 putative small nuclear ribonucleoprotein E                   26  3.4
At5g19270 reverse-transcriptase - like protein                         26  4.5

>At3g59810 U6 snRNA-associated Sm-like protein
          Length = 91

 Score = 80.1 bits (196), Expect = 2e-16
 Identities = 38/43 (88%), Positives = 40/43 (92%)

Query: 1  MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
          MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST   T+A+G
Sbjct: 48 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNMTVADG 90


>At2g43810 putative small nuclear ribonucleoprotein polypeptide F
          Length = 91

 Score = 80.1 bits (196), Expect = 2e-16
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1  MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
          MNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G
Sbjct: 48 MNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSDG 90


>At4g30220 snRNP Sm protein F - like
          Length = 88

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 1  MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
          MN+ +  TEEY++GQL    G+  IR NNVLY+
Sbjct: 41 MNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 73


>At3g11500 putative small nuclear ribonucleoprotein polypeptide G
          Length = 79

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 1  MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
          MN+ ++ T E VNG  K   G   IRGN+++ +
Sbjct: 39 MNLVVDNTVE-VNGDDKTDIGMVVIRGNSIVTV 70


>At2g23930 putative small nuclear ribonucleoprotein E
          Length = 80

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 1  MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
          MN+ ++ T E VNG  K   G   IRGN+++ +
Sbjct: 39 MNLVVDNTVE-VNGNDKTDIGMVVIRGNSIVTV 70


>At5g19270 reverse-transcriptase - like protein
          Length = 365

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 2  NIAMEQTEEYVNGQLKNKYGDAFIRGNNV 30
          +I +E+ E ++N +  + YG  F+RG ++
Sbjct: 29 SIGVEEEERWLNARQIDTYGACFVRGTSL 57


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.312    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 809,913
Number of Sequences: 26719
Number of extensions: 17510
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 43
length of database: 11,318,596
effective HSP length: 19
effective length of query: 24
effective length of database: 10,810,935
effective search space: 259462440
effective search space used: 259462440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)