BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137603.5 + phase: 0
(370 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04460 unknown protein 543 e-155
At2g26350 zinc-binding peroxisomal integral membrane protein (PE... 43 3e-04
At5g48655 RING zinc finger like protein 37 0.013
At5g15790 unknown protein 37 0.013
At5g07750 putative protein 36 0.029
At3g26730 RING zinc finger like protein 36 0.029
At2g32950 photomorphogenesis repressor (COP1) 36 0.029
At5g41440 putative protein 35 0.050
At3g02291 unknown protein 35 0.050
At1g19310 unknown protein 35 0.050
At4g21070 putative protein (fragment) 35 0.066
At3g20010 uteroglobin promoter-binding protein, RUSH-1alpha-like... 35 0.066
At2g33340 putative PRP19-like spliceosomal protein 35 0.066
At3g07200 putative RING zinc finger protein 35 0.086
At3g11840 unknown protein 34 0.15
At1g72600 hypothetical protein 33 0.19
At5g10380 putative protein 33 0.25
At3g50180 putative protein 33 0.25
At1g28290 proline-rich protein, putative 33 0.25
At5g38895 unknown protein 33 0.33
>At3g04460 unknown protein
Length = 393
Score = 543 bits (1398), Expect = e-155
Identities = 260/392 (66%), Positives = 315/392 (80%), Gaps = 23/392 (5%)
Query: 1 MLFQVGGQGSRPTFFEMAAAEQLPRSLRAALTYSIGVLALRTPFLHKLLDYEHESFSLLM 60
MLFQVGG+G+RPTFFEMAAA+QLP SLRAALTYS+GV ALR FLHK+LDYE E F+ LM
Sbjct: 1 MLFQVGGEGTRPTFFEMAAAQQLPASLRAALTYSLGVFALRRSFLHKILDYEDEFFAALM 60
Query: 61 LVLEAHSLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQ------LRRRQKLLSLLF 114
L+LE HSLRTTD SF+ESLYGLRR+ A ++L + + SS+ L +RQ++LS++F
Sbjct: 61 LILEGHSLRTTDGSFAESLYGLRRKSARLRLRKDSARKDSSEEVQHSGLEKRQRILSVVF 120
Query: 115 LVVLPYLKSKLHSIYNKEREARIQATIWGDENESY-----------------TFNARASV 157
LVVLPY KSKLH+IYNKEREAR++ ++WG E++ + + N SV
Sbjct: 121 LVVLPYFKSKLHAIYNKEREARLRESLWGAEDQGFDEADFFTGDDSIVSREPSGNEELSV 180
Query: 158 TTLITKRFQKIVGLCYPLLHAGTEGFQFAYQLLYLLDATGYYSLALHALGIHVCRATGQE 217
+ + +K + +CYP +HA +EG F YQLLYLLDATG+YSL L ALGI VCRATGQE
Sbjct: 181 RVQLATKIKKFIAVCYPWIHASSEGLSFTYQLLYLLDATGFYSLGLQALGIQVCRATGQE 240
Query: 218 LMDASSRISKIRSRERERLRGPQWIKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWW 277
LMD SSRISKIR+ ERERLRGP W+KT+QGALLSC+Y VLDYAQTGLIAAVF FKMMEWW
Sbjct: 241 LMDTSSRISKIRNHERERLRGPPWLKTVQGALLSCSYAVLDYAQTGLIAAVFIFKMMEWW 300
Query: 278 YQSAEERMSAPTVYPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFC 337
YQSAEER+SAPTVYPPPPPPP PK+AKEG+ LP DR++C LCLQKR NPSV+TVSGFVFC
Sbjct: 301 YQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLCALCLQKRANPSVVTVSGFVFC 360
Query: 338 YACIFKFLTQYKRCPATMVPATVDQIRRLFHD 369
Y+C+FK++++YKRCP T++PA+VDQIRRLF D
Sbjct: 361 YSCVFKYVSKYKRCPVTLIPASVDQIRRLFQD 392
>At2g26350 zinc-binding peroxisomal integral membrane protein
(PEX10)
Length = 381
Score = 42.7 bits (99), Expect = 3e-04
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLFH 368
C LCL R +P+ T G VFC++CI ++ + + CP P T + L+H
Sbjct: 327 CTLCLSTRQHPTA-TPCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYH 378
>At5g48655 RING zinc finger like protein
Length = 203
Score = 37.4 bits (85), Expect = 0.013
Identities = 20/75 (26%), Positives = 31/75 (40%), Gaps = 13/75 (17%)
Query: 293 PPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCP 352
P PPP PK CP+C+ + T G +FC CI +++ +CP
Sbjct: 137 PAPPPEEPKFT------------CPICMCP-FTEEMSTKCGHIFCKGCIKMAISRQGKCP 183
Query: 353 ATMVPATVDQIRRLF 367
T ++ R+F
Sbjct: 184 TCRKKVTAKELIRVF 198
>At5g15790 unknown protein
Length = 232
Score = 37.4 bits (85), Expect = 0.013
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 303 AKEGVQLPSD-RTICPLCLQKRV--NPSVMTVSGFVFCYACIFKFLTQYKRCP 352
+ EG+ + SD +CP CL++ + NP ++T F +CI++++ + + CP
Sbjct: 168 SNEGLYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCP 220
>At5g07750 putative protein
Length = 1289
Score = 36.2 bits (82), Expect = 0.029
Identities = 16/37 (43%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
Query: 281 AEERMSAPTVYPPPPPPPPPKVAKEGVQLPSDRTICP 317
+ ER ++ TV PPPPPPPPP ++ P+ T+ P
Sbjct: 678 SSERPNSGTVLPPPPPPPPPFSSER----PNSGTVLP 710
Score = 34.3 bits (77), Expect = 0.11
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 281 AEERMSAPTVYPPPPPPPPPKVA 303
A R ++ T+ PPPPPPPPP A
Sbjct: 799 ASVRRNSETLLPPPPPPPPPPFA 821
Score = 32.3 bits (72), Expect = 0.43
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
Query: 281 AEERMSAPTVYPPPPPPPPPKVAKEGVQLPSDRTICP 317
+ ER ++ TV PPPPPPP P ++ P+ T+ P
Sbjct: 699 SSERPNSGTVLPPPPPPPLPFSSER----PNSGTVLP 731
Score = 31.2 bits (69), Expect = 0.95
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 281 AEERMSAPTVYPPPPPPPPPK 301
A R ++ T+ PPPPPPPP K
Sbjct: 821 ASVRRNSETLLPPPPPPPPWK 841
Score = 29.6 bits (65), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 279 QSAEERMSAPTVYPPPPPPPPP 300
Q + + ++ PPPPPPPPP
Sbjct: 776 QKSSDLQTSQLPSPPPPPPPPP 797
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 292 PPPPPPPPPKVAKEGVQLPSDRTICP 317
PPPPPPPPP ++ P+ T+ P
Sbjct: 668 PPPPPPPPPFSSER----PNSGTVLP 689
Score = 29.3 bits (64), Expect = 3.6
Identities = 12/31 (38%), Positives = 18/31 (57%)
Query: 281 AEERMSAPTVYPPPPPPPPPKVAKEGVQLPS 311
+ ER ++ TV PPPP PP V + +P+
Sbjct: 720 SSERPNSGTVLPPPPSPPWKSVYASALAIPA 750
Score = 28.9 bits (63), Expect = 4.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 860 PPPPPPPPP 868
Score = 28.9 bits (63), Expect = 4.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 956 PPPPPPPPP 964
Score = 28.9 bits (63), Expect = 4.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 969 PPPPPPPPP 977
Score = 28.9 bits (63), Expect = 4.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 280 SAEERMSAPTVYPPPPPPPP 299
S+E S + PPPPPPPP
Sbjct: 678 SSERPNSGTVLPPPPPPPPP 697
Score = 28.9 bits (63), Expect = 4.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 982 PPPPPPPPP 990
Score = 28.9 bits (63), Expect = 4.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 943 PPPPPPPPP 951
Score = 28.9 bits (63), Expect = 4.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 647 PPPPPPPPP 655
Score = 28.1 bits (61), Expect = 8.0
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 286 SAPTVYPPPPPPPPP 300
S+ V PPPPPPPP
Sbjct: 640 SSQAVASPPPPPPPP 654
Score = 28.1 bits (61), Expect = 8.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 286 SAPTVYPPPPPPPPP 300
S P PPPPPPPP
Sbjct: 911 SPPVKTAPPPPPPPP 925
>At3g26730 RING zinc finger like protein
Length = 772
Score = 36.2 bits (82), Expect = 0.029
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQ---------YKRCPATMV 356
CP+CL+ + P + T G +FC+ CI ++L +KRCP V
Sbjct: 245 CPICLEYPLCPQI-TSCGHIFCFPCILQYLLTGVDNHKVDCFKRCPLCFV 293
>At2g32950 photomorphogenesis repressor (COP1)
Length = 675
Score = 36.2 bits (82), Expect = 0.029
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 315 ICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQI 363
+CP+C+Q + + +T G FCY CI L CP T +Q+
Sbjct: 51 LCPICMQI-IKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQL 98
>At5g41440 putative protein
Length = 124
Score = 35.4 bits (80), Expect = 0.050
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 21/82 (25%)
Query: 292 PPPPPPPPPKVAKEGVQLPS------------------DRTICPLCLQK-RVNPSVMTVS 332
PPPPPPPPP+ E +P+ D C +CL++ ++ +M +
Sbjct: 36 PPPPPPPPPQQDIETGHIPAINKTTVETIIKVEDVEEGDEGCCSICLEEFKIGHELMCIK 95
Query: 333 --GFVFCYACIFKFLTQYKRCP 352
VF C+ ++ + CP
Sbjct: 96 KCRHVFHRFCMLSWIDANRNCP 117
>At3g02291 unknown protein
Length = 231
Score = 35.4 bits (80), Expect = 0.050
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 309 LPSDRTICPLCLQKRV--NPSVMTVSGFVFCYACIFKFLTQYKRCP 352
L D +CP CL++ NP ++T F +CI++++ + + CP
Sbjct: 174 LSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCP 219
>At1g19310 unknown protein
Length = 226
Score = 35.4 bits (80), Expect = 0.050
Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 4/55 (7%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFL---TQYKRCPATMVPATVDQIRRLF 367
C +CL +P ++T+ G +FC+ C++K+L +Q K CP D++ L+
Sbjct: 23 CNICLDLAQDP-IVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEEDRLVPLY 76
>At4g21070 putative protein (fragment)
Length = 1495
Score = 35.0 bits (79), Expect = 0.066
Identities = 19/53 (35%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLFH 368
CP+CL N +V VFC ACI K + CP +P +IR H
Sbjct: 598 CPICLSL-YNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGAPH 649
>At3g20010 uteroglobin promoter-binding protein, RUSH-1alpha-like,
putative
Length = 1047
Score = 35.0 bits (79), Expect = 0.066
Identities = 20/59 (33%), Positives = 30/59 (49%), Gaps = 5/59 (8%)
Query: 308 QLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLT-QYKRCPATMVPATVDQIRR 365
+L S IC C + P V+T+ G +FCY C+ +++T CP VP Q+ R
Sbjct: 743 RLESSSAICYECNEPPEKP-VVTLCGHIFCYECVLEYITGDENTCP---VPRCKQQLAR 797
>At2g33340 putative PRP19-like spliceosomal protein
Length = 565
Score = 35.0 bits (79), Expect = 0.066
Identities = 17/48 (35%), Positives = 25/48 (51%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQI 363
C + + V P V T SG +F I + ++ Y +CP T P T+D I
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDI 50
>At3g07200 putative RING zinc finger protein
Length = 182
Score = 34.7 bits (78), Expect = 0.086
Identities = 18/52 (34%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLF 367
CP+CL V T G +FC CI L+ +CP TV + R+F
Sbjct: 127 CPICLCP-FTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVF 177
>At3g11840 unknown protein
Length = 470
Score = 33.9 bits (76), Expect = 0.15
Identities = 20/58 (34%), Positives = 32/58 (54%), Gaps = 2/58 (3%)
Query: 304 KEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVD 361
+E +++P+ ICP+ L+ +P V TVSG + I K+L + CP T P +D
Sbjct: 19 EEEIEIPN-YFICPISLEIMKDP-VTTVSGITYDRQNIVKWLEKVPSCPVTKQPLPLD 74
>At1g72600 hypothetical protein
Length = 135
Score = 33.5 bits (75), Expect = 0.19
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Query: 264 LIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPP 300
L VFFF + S + S+ T PPPPPPPPP
Sbjct: 12 LFCFVFFFISASIFVDSKSQDSSSIT--PPPPPPPPP 46
>At5g10380 putative protein
Length = 301
Score = 33.1 bits (74), Expect = 0.25
Identities = 22/66 (33%), Positives = 33/66 (49%), Gaps = 13/66 (19%)
Query: 291 YPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKR 350
YPPPPPPPPP + + LP+ +IC V ++ F+F ++ +TQ +R
Sbjct: 25 YPPPPPPPPPP-RELSLLLPT--SIC----------VVGSIILFLFLVFFLYLHITQQRR 71
Query: 351 CPATMV 356
A V
Sbjct: 72 ISAASV 77
>At3g50180 putative protein
Length = 588
Score = 33.1 bits (74), Expect = 0.25
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 284 RMSAPTVYPPPPPPPPP 300
R AP PPPPPPPPP
Sbjct: 21 RQRAPPPQPPPPPPPPP 37
Score = 32.3 bits (72), Expect = 0.43
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 283 ERMSAPTVYPPPPPPPPPKVAKEGVQL 309
+R P PPPPPPPPP + G +L
Sbjct: 22 QRAPPPQPPPPPPPPPPPPPPRLGPRL 48
>At1g28290 proline-rich protein, putative
Length = 359
Score = 33.1 bits (74), Expect = 0.25
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 288 PTVYPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYAC 340
P VYPP P P V+ P+ + P + N S++ V G V+C +C
Sbjct: 194 PPVYPPTKAPVKPPVSP-----PTKPPVTPPVYPPKFNRSLVAVRGTVYCKSC 241
>At5g38895 unknown protein
Length = 221
Score = 32.7 bits (73), Expect = 0.33
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 312 DRTICPLCLQKRV--NPSVMTVSGFVFCYACIFKFLTQYKRCP 352
D ICP CL NP ++T F +CI++++ + + CP
Sbjct: 165 DEDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCP 207
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,225,628
Number of Sequences: 26719
Number of extensions: 357904
Number of successful extensions: 7192
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 4873
Number of HSP's gapped (non-prelim): 1178
length of query: 370
length of database: 11,318,596
effective HSP length: 101
effective length of query: 269
effective length of database: 8,619,977
effective search space: 2318773813
effective search space used: 2318773813
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC137603.5