BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137510.8 - phase: 0 /pseudo
(254 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11980 unknown protein 292 1e-79
At4g25440 putative protein 39 0.003
At1g28960 unknown protein 35 0.039
At4g12720 growth factor like protein 33 0.19
At1g10040 unknown protein 33 0.19
At1g68760 mutT like protein 32 0.43
At2g33980 unknown protein 31 0.56
At5g45940 unknown protein 31 0.73
At2g04450 putative mutT domain protein 31 0.73
At5g47240 mutT domain protein-like 30 1.2
At4g14990 unknown protein 30 1.2
At5g49150 unknown protein 28 3.6
At2g03630 hypothetical protein 28 3.6
At5g47650 MutT domain protein-like 28 4.7
At3g03520 unknown protein 28 4.7
At5g20780 putative protein 28 6.2
At3g06880 hypothetical protein 28 6.2
At2g44330 putative protein 28 6.2
At2g01750 putative myosin heavy chain-like protein 28 6.2
At1g42550 unknown protein (At1g42550) 28 6.2
>At4g11980 unknown protein
Length = 309
Score = 292 bits (748), Expect = 1e-79
Identities = 152/195 (77%), Positives = 169/195 (85%), Gaps = 2/195 (1%)
Query: 35 KMSSSTESPSLTHSITLPSKQSEPVHILAAPGVSSSDFWSAIDSSLFKQWLHNLQTENGI 94
KMSSS S SLT SITLPS+ +EPV + A G+SSSDF AIDSSLF+ WL NL++E+GI
Sbjct: 35 KMSSS--SSSLTQSITLPSQPNEPVLVSATAGISSSDFRDAIDSSLFRNWLRNLESESGI 92
Query: 95 LANDTMTLRQVLIQGVDMFGKRIGFLKFIAEIIDKETGNKVPGIVFARGPAVAMLILLES 154
LA+ +MTL+QVLIQGVDMFGKRIGFLKF A+I DKETG KVPGIVFARGPAVA+LILLES
Sbjct: 93 LADGSMTLKQVLIQGVDMFGKRIGFLKFKADIFDKETGQKVPGIVFARGPAVAVLILLES 152
Query: 155 EGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMVDLT 214
+GETYAVLTEQ RVP G+I+LELPAGMLDDDKGD VGTAVREVEEE GIKL EDMVDLT
Sbjct: 153 DGETYAVLTEQVRVPTGKIVLELPAGMLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLT 212
Query: 215 AFLDSSTGSTVFPSP 229
AFLD STG +FPSP
Sbjct: 213 AFLDPSTGYRIFPSP 227
>At4g25440 putative protein
Length = 668
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/92 (29%), Positives = 46/92 (49%), Gaps = 19/92 (20%)
Query: 144 PAVAMLILLESEGETYAVLTEQARVPVGRIIL-----------------ELPAGMLDDDK 186
P ML+ E E+ L RV VG ++L ++P G++D+ +
Sbjct: 472 PTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKEEKYGSLCGSGIWKIPTGVVDEGE 531
Query: 187 GDIVGTAVREVEEETGIKLNVEDMVDLTAFLD 218
+I A+REV+EETG++ ++ +D T FL+
Sbjct: 532 -EIFAAAIREVKEETGVRRSIYLNID-TEFLE 561
>At1g28960 unknown protein
Length = 293
Score = 35.0 bits (79), Expect = 0.039
Identities = 26/97 (26%), Positives = 49/97 (49%), Gaps = 7/97 (7%)
Query: 116 RIGFLKFIAEIIDKETGNKVPGIVFARGPAVAMLILLESEGETYAVLTEQA-RVPVGRII 174
++GF + IA + +K P + AV + + +G+ +LT+++ ++
Sbjct: 80 QVGFQESIAPL------SKDPDRFKPKRAAVLICLFEGDDGDLRVILTKRSSKLSTHSGE 133
Query: 175 LELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMV 211
+ LP G ++D D TA RE EEE G+ ++ D+V
Sbjct: 134 VSLPGGKAEEDDKDDGMTATREAEEEIGLDPSLVDVV 170
>At4g12720 growth factor like protein
Length = 282
Score = 32.7 bits (73), Expect = 0.19
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 150 ILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVED 209
+++ + V+ E++ + + +LP G++++ + G A REVEEETGI + D
Sbjct: 109 LVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGEDIWTGVA-REVEEETGI---IAD 164
Query: 210 MVDLTAFLDS 219
V++ AF S
Sbjct: 165 FVEVLAFRQS 174
>At1g10040 unknown protein
Length = 412
Score = 32.7 bits (73), Expect = 0.19
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 26 KKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPG--VSSSDFWSAIDSSLFKQ 83
KKKK + S ES ++ ++ P +++EP H++ + S+ W + K+
Sbjct: 47 KKKKYWMGCLRAESDESGNVDLTVDFPGERTEPTHLVVMVNGLIGSAQNWRFAAKQMLKK 106
Query: 84 WLHNLQTENGILANDTMTLRQVLIQGVDMFGKRI 117
+ +L + T T GVD+ G+R+
Sbjct: 107 YPQDLLVHCSKRNHSTQT-----FDGVDVMGERL 135
>At1g68760 mutT like protein
Length = 147
Score = 31.6 bits (70), Expect = 0.43
Identities = 28/98 (28%), Positives = 49/98 (49%), Gaps = 7/98 (7%)
Query: 144 PAVAMLILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGI 203
P VA+++ + + ++L + R +G LP G L+ + A REV EETG+
Sbjct: 8 PRVAVVVFILNGN---SILLGRRRSSIGNSTFALPGGHLEFGES-FEECAAREVMEETGL 63
Query: 204 KLNVEDMVDLT--AFLDSSTGSTVFPSPSAESVLIKRS 239
K+ ++ +T F ++ T S + S S +VL+ S
Sbjct: 64 KIEKMKLLTVTNNVFKEAPTPSH-YVSVSIRAVLVDPS 100
>At2g33980 unknown protein
Length = 302
Score = 31.2 bits (69), Expect = 0.56
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 145 AVAMLILLESEGETYAVLTEQAR-VPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGI 203
AV + + +G+ +LT+++ + + LP G ++ D TA RE EEE G+
Sbjct: 77 AVLICLFEGDDGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREAEEEIGL 136
Query: 204 KLNVEDMVDLTAFLD 218
+VD+ AFL+
Sbjct: 137 D---PSLVDVVAFLE 148
>At5g45940 unknown protein
Length = 222
Score = 30.8 bits (68), Expect = 0.73
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 177 LPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMVDLTAFLDSSTGSTVFP 227
LP G D + D + TA+RE EE G+ ++ ++ + + G +V P
Sbjct: 71 LPGGKRDQEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAP 121
>At2g04450 putative mutT domain protein
Length = 283
Score = 30.8 bits (68), Expect = 0.73
Identities = 20/49 (40%), Positives = 30/49 (60%), Gaps = 4/49 (8%)
Query: 171 GRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMVDLTAFLDS 219
G + +LP G++ + + G A+REVEEETGIK V++ AF +S
Sbjct: 130 GTGVWKLPTGVVKEGENIWEG-ALREVEEETGIKTK---FVEVLAFRES 174
>At5g47240 mutT domain protein-like
Length = 369
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 161 VLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMV 211
V+ E+ P + +LP G +++ + +I AVREV+EETG+ +++
Sbjct: 206 VVQEKYCAPSITGLWKLPTGFINESE-EIFSGAVREVKEETGVDTEFSEVI 255
>At4g14990 unknown protein
Length = 787
Score = 30.0 bits (66), Expect = 1.2
Identities = 23/96 (23%), Positives = 39/96 (39%), Gaps = 12/96 (12%)
Query: 18 FHAPNLIPKKKKNGFFYKMSSSTESPS---------LTHSITLPSKQSEPVHILAAPGVS 68
F APN P + +S + PS + TL + +P H + PG+
Sbjct: 214 FSAPNASPLSNST---FHLSGLSHGPSHYGNNLARYASCGPTLGNMVQQPPHWVTDPGLL 270
Query: 69 SSDFWSAIDSSLFKQWLHNLQTENGILANDTMTLRQ 104
D + + S + +Q L L NG + ++L+Q
Sbjct: 271 HGDHSALLHSLMQQQHLQQLPPRNGFTSQQLISLQQ 306
>At5g49150 unknown protein
Length = 896
Score = 28.5 bits (62), Expect = 3.6
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 104 QVLIQGVDMFGKRI-GFLKFIAEIIDKETGNKVP 136
++L+ D FG + GF +F A++++ ETG +P
Sbjct: 137 EILLHQKDRFGNIVSGFYEFDADVVEVETGLSIP 170
>At2g03630 hypothetical protein
Length = 252
Score = 28.5 bits (62), Expect = 3.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 180 GMLDDDKGDIVGTAVREVEEETGIKLNVEDMVDLTAFLDSSTGSTVFPSP 229
G LDD+ GD+ + E ET I +N E L++ SS+ S+ + SP
Sbjct: 23 GSLDDENGDVEHKTIPLQETETVI-INSESHSRLSSSSSSSSSSSSYLSP 71
>At5g47650 MutT domain protein-like
Length = 278
Score = 28.1 bits (61), Expect = 4.7
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 171 GRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMV 211
G+ I + P G++++ + DI +VREV+EETG+ + ++
Sbjct: 138 GQGIWKFPTGVVNEGE-DIHDGSVREVKEETGVDTEFDQIL 177
>At3g03520 unknown protein
Length = 523
Score = 28.1 bits (61), Expect = 4.7
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 16 KPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPGVSSSDFW-S 74
KPF + P K NGF + T+ S + + PV + D W S
Sbjct: 93 KPFSDESPYPDPKMNGFVQNAEAITKGMSEKVVMQGFPPEKLPVFKELVQEFAVCDRWFS 152
Query: 75 AIDSSLFKQWLH-NLQTENGILANDTMTL 102
++ SS L+ + T NG +NDT TL
Sbjct: 153 SLPSSTQPNRLYVHAATSNGAFSNDTNTL 181
>At5g20780 putative protein
Length = 818
Score = 27.7 bits (60), Expect = 6.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 61 ILAAPGVSSSDFWSAIDSSLFKQWLHNLQTENGILANDTMTLRQVLIQGVDMFGKRIGFL 120
++ A G S + +L +LH L+ N T+R V++ G D+FGK +G L
Sbjct: 486 VVTAQGTDESSY------ALLPVYLHVLKLAN------PGTVRVVVVDGTDLFGKYLGCL 533
>At3g06880 hypothetical protein
Length = 1115
Score = 27.7 bits (60), Expect = 6.2
Identities = 34/148 (22%), Positives = 65/148 (42%), Gaps = 10/148 (6%)
Query: 69 SSDFWSAIDSSLFKQWLHNLQTENGILANDTMTLRQVLIQGVDMFGKR--IGFLKFIAEI 126
SS F + S+F+ +T D +LRQ+ ++ + +FG++ I F +
Sbjct: 312 SSSFIGNFNRSIFEIQAQQSKTTWNTHLEDASSLRQLDLEEISVFGQKGSISFEGMRRNL 371
Query: 127 IDKETGNKVPGIVFARGPAVAMLILLESEGETYAVLTEQARVPVGRIILEL-------PA 179
K+ GN + + R P + + + L+S + ++ V +I ++
Sbjct: 372 QTKKRGNGLE-TLSRRAPTMDLWMNLQSLIKEVLGNADEKYVSEVTMIYQMLNRKEGFKY 430
Query: 180 GMLDDDKGDIVGTAVREVEEETGIKLNV 207
ML D D + TA+ EE+T IK ++
Sbjct: 431 SMLKDVILDQLFTAISSSEEKTVIKASM 458
>At2g44330 putative protein
Length = 180
Score = 27.7 bits (60), Expect = 6.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 162 LTEQARVPVGRIILELPAGMLDDDKG-DIVGTAVR---EVEEETGIKLNVEDMVD 212
LT P+ R+ ELP +DD G D+ A+ ++EEE G+ L++E +D
Sbjct: 127 LTSHNSCPLCRV--ELPVASSEDDSGLDMWFDALNLEDDLEEEAGVTLDLEQSLD 179
>At2g01750 putative myosin heavy chain-like protein
Length = 629
Score = 27.7 bits (60), Expect = 6.2
Identities = 16/52 (30%), Positives = 26/52 (49%)
Query: 6 RTISAALKNLKPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSE 57
R++S + ++IPK NGFF K S S++ SL S + K ++
Sbjct: 406 RSMSNGPSRRQSLGGADIIPKLTSNGFFSKRSPSSQFRSLNASTSTILKHAK 457
>At1g42550 unknown protein (At1g42550)
Length = 843
Score = 27.7 bits (60), Expect = 6.2
Identities = 27/118 (22%), Positives = 49/118 (40%), Gaps = 13/118 (11%)
Query: 88 LQTENGILANDTMTLRQVLIQGVDMFGKRIGFLKFIAEIIDKETGNKVPGIVFARGPAVA 147
L + +LA L +++++G LK A+++D E +V + P +
Sbjct: 663 LTSAEEVLAVSLQKLEEMVVEG----------LKIQADMVDDEAPFEVSAAKGQKNPLES 712
Query: 148 MLILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKL 205
+ L E + E T+Q + + L P + G +V E EEE G+K+
Sbjct: 713 TIPLEEWQKEHR---TQQKLTVLATVQLRDPTRRYEAVGGTVVVAVQAEEEEEKGLKV 767
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,406,712
Number of Sequences: 26719
Number of extensions: 225126
Number of successful extensions: 684
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 25
length of query: 254
length of database: 11,318,596
effective HSP length: 97
effective length of query: 157
effective length of database: 8,726,853
effective search space: 1370115921
effective search space used: 1370115921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC137510.8