BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137081.4 - phase: 0
(325 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 328 3e-90
At4g16910 retrotransposon like protein 319 1e-87
At3g31970 hypothetical protein 318 3e-87
At2g07660 putative retroelement pol polyprotein 307 4e-84
At2g14650 putative retroelement pol polyprotein 305 2e-83
At2g04670 putative retroelement pol polyprotein 301 3e-82
At3g29490 hypothetical protein 266 1e-71
At1g36120 putative reverse transcriptase gb|AAD22339.1 261 4e-70
At4g03840 putative transposon protein 256 1e-68
At4g07830 putative reverse transcriptase 254 4e-68
At2g06470 putative retroelement pol polyprotein 221 3e-58
At3g11970 hypothetical protein 176 1e-44
At1g36590 hypothetical protein 176 1e-44
At2g14640 putative retroelement pol polyprotein 157 6e-39
At3g31480 hypothetical protein 152 3e-37
At4g10580 putative reverse-transcriptase -like protein 140 7e-34
At1g35370 hypothetical protein 134 5e-32
At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein 95 6e-20
At4g07850 putative polyprotein 93 2e-19
At2g05610 putative retroelement pol polyprotein 83 2e-16
>At2g10780 pseudogene
Length = 1611
Score = 328 bits (840), Expect = 3e-90
Identities = 155/289 (53%), Positives = 211/289 (72%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD RFTS+FWK+ Q ALG+++ LS+AYHPQTD QSERTIQ+LED+LR CVL+
Sbjct: 1294 PVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDW 1353
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG + +L L+EF YNNS+ +SIGM+P+EALYG CRTPLCW GE + GP +V ETT
Sbjct: 1354 GGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETT 1413
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E+++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+L+ G GR +KL+P+++
Sbjct: 1414 ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYV 1473
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY++ ERVG VAY++ LPP L+ H+VFHVSQLRK ++D + +++N+TVE
Sbjct: 1474 GPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEA 1533
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+RI +R K RGK L++V+W E TWE E+KM+ ++PE F
Sbjct: 1534 WPVRIMDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANFPEWF 1582
>At4g16910 retrotransposon like protein
Length = 687
Score = 319 bits (817), Expect = 1e-87
Identities = 151/289 (52%), Positives = 208/289 (71%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD RFTS+FWK Q LG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+
Sbjct: 378 PVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDW 437
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG + +L L+EF YNNS+ +SIGM+P+EALYG RTPLCW GE + GP +V ETT
Sbjct: 438 GGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDETT 497
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
+K++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+L+ G GR +KL P+++
Sbjct: 498 KKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYV 557
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY++ ERVG VAY++ LPP L H+VFHVSQLRK +++ + +++N+TVE
Sbjct: 558 GPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVEA 617
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+RI ++ K RGK + L++++W E TWE E+KM+ ++PE F
Sbjct: 618 WPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFPEWF 666
>At3g31970 hypothetical protein
Length = 1329
Score = 318 bits (814), Expect = 3e-87
Identities = 154/291 (52%), Positives = 213/291 (72%), Gaps = 4/291 (1%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD +FTS FW++ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+LR+CVL++
Sbjct: 1035 PVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDR 1094
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG HL L+EF YNNSY +SI MAPFEALYG CRTPLCW + GE + G D V ETT
Sbjct: 1095 GGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERSIYGADYVLETT 1154
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E++R+++ MK +Q RQ+SY DKRR++LEF+ GD V+L++ L G R++ KLTP+++
Sbjct: 1155 ERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLTPRYM 1214
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I ERVG VAYR+ LP + H VFHVS LRK + V+ + ++ N+T+E
Sbjct: 1215 GPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKILEDLQPNMTLEA 1274
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWG--GATGESLTWELESKMRESYPELF 324
P+RI R++K LR K+IPL++V+W G T E TWE E++M+ S+ + F
Sbjct: 1275 RPVRILERRIKELRRKKIPLIKVLWNCDGVTEE--TWEPEARMKASFKKWF 1323
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 307 bits (787), Expect = 4e-84
Identities = 146/264 (55%), Positives = 197/264 (74%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD RFTS+FW + Q ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+
Sbjct: 686 PVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDW 745
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG + +L LIEF YNNS+ +SIGM+P+EALYG CRTPLCW GE + GP +V ETT
Sbjct: 746 GGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETT 805
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E+++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+L+ G GR +KL+P+++
Sbjct: 806 ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYV 865
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY++ ERVG VAY++ LPP L+ H+VFHVSQLRKY++D + +++N+TVE
Sbjct: 866 GPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVEA 925
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVV 299
P+RI +R K RGK L++V+
Sbjct: 926 WPVRIMDRMSKGTRGKSRDLLKVL 949
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 305 bits (781), Expect = 2e-83
Identities = 149/291 (51%), Positives = 209/291 (71%), Gaps = 4/291 (1%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD +FTS FW++ Q +G+K+++S+AYHPQT GQSERTIQ+LED+LR+CVL+
Sbjct: 1037 PVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDW 1096
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG HL L+EF YNNSY +SIGMAPFEALY CRTPLC + GE + G D V ETT
Sbjct: 1097 GGHWADHLSLVEFAYNNSYPASIGMAPFEALYERPCRTPLCLTQVGERSIYGADYVQETT 1156
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E++R+++ MK +Q RQ+SY DKRR++LEF+ GD V+L++ L G R++ KL+P+++
Sbjct: 1157 ERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYM 1216
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I ERVG VAYR+ LP + H VFHVS LRK + V+ + ++ N+T+E
Sbjct: 1217 GPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEA 1276
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVW--GGATGESLTWELESKMRESYPELF 324
P+R+ R++K LR K+IPL++V+W G T E TWE E++M+ + + F
Sbjct: 1277 RPVRVLERRIKELRRKKIPLIKVLWDCDGVTKE--TWEPEARMKARFKKWF 1325
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 301 bits (771), Expect = 3e-82
Identities = 147/291 (50%), Positives = 208/291 (70%), Gaps = 4/291 (1%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD +FT FW++ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+LR+CVL+
Sbjct: 1117 PVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDW 1176
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG HL L+EF YNNSY +SIGMAPFEALYG C TPL W + E + G D V ETT
Sbjct: 1177 GGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETT 1236
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E++R+++ MK +Q+RQ+SY DKRR++LEF+ GD V+L++ L G R++ KL+P+++
Sbjct: 1237 ERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYM 1296
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I ERVG VAYR+ LP + H VFHV LRK + V+ + ++ N+T+E
Sbjct: 1297 GPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHKDDEVLVKIPEDLQPNMTLEA 1356
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVW--GGATGESLTWELESKMRESYPELF 324
P+R+ R++K LR K+IPL++V+W G T E TWE E++M+ + + F
Sbjct: 1357 RPVRVLERRIKELRRKKIPLIKVLWDCDGVTEE--TWEPEARMKARFKKWF 1405
>At3g29490 hypothetical protein
Length = 438
Score = 266 bits (679), Expect = 1e-71
Identities = 129/268 (48%), Positives = 187/268 (69%), Gaps = 4/268 (1%)
Query: 59 LGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGASDSHLPLIEFTYNNSYHSSI 118
+G+K+++S+ YHPQTDGQ ERTIQ+LED+LR+CVL+ GG HL L+EF YNNSY + I
Sbjct: 70 MGTKVQMSTPYHPQTDGQFERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQAGI 129
Query: 119 GMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETTEKVRMIREKMKASQSRQKSYHDK 178
GMAPFEALYG CRTPLCW + GE + G D V ETTE++R+++ MK +Q RQ SY DK
Sbjct: 130 GMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQWSYADK 189
Query: 179 RRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISERVGTVAYRVGLPPHLS 238
RR++LEF+ GD V+L++ L G R++ KL+ +++GP++I ERVG VAY + LP +
Sbjct: 190 RRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERVGPVAYMLELPDVMR 249
Query: 239 NLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETMPLRIDNRKVKSLRGKEIPLVRV 298
H VFHVS LRK + V+ + ++ N+T+E +R+ R++K L+ K+I L++V
Sbjct: 250 AFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARQVRVLERRIKELQRKKISLIKV 309
Query: 299 VW--GGATGESLTWELESKMRESYPELF 324
+W G T E TW+ E++M+ + + F
Sbjct: 310 LWDCDGVTEE--TWQPEARMKARFKKWF 335
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 261 bits (667), Expect = 4e-70
Identities = 133/291 (45%), Positives = 190/291 (64%), Gaps = 33/291 (11%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SI+S RD +FTS FW++ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+L++CVL+
Sbjct: 970 PVSILSHRDSKFTSAFWRAFQVEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLQMCVLDW 1029
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG HL L++F YNNSY +SIGMAPFEALYG CRT LCW + GE + G D V ETT
Sbjct: 1030 GGHWADHLSLVKFAYNNSYQASIGMAPFEALYGRPCRTLLCWTQVGEKSIYGADYVQETT 1089
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E++R+++ MK +Q RQ+SY DKRR++LEF+ G
Sbjct: 1090 ERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGT-------------------------- 1123
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
+I ERVG VAYR+ LP + H+VFHVS LRK + V+ + ++ N+T+E
Sbjct: 1124 ---EIVERVGPVAYRLELPDVMRAFHNVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEA 1180
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVW--GGATGESLTWELESKMRESYPELF 324
P+R+ R++K +R K+IP+++V+W G T E TWE E++++ + + F
Sbjct: 1181 RPVRVLERRIKEVRRKKIPMIKVLWDCDGVTEE--TWEPEARIKARFKKWF 1229
>At4g03840 putative transposon protein
Length = 973
Score = 256 bits (654), Expect = 1e-68
Identities = 127/274 (46%), Positives = 179/274 (64%), Gaps = 19/274 (6%)
Query: 51 FWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGASDSHLPLIEFTY 110
FWK+ Q ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR C L+ GG + +L L
Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL----- 744
Query: 111 NNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETTEKVRMIREKMKASQS 170
ALYG CRTPLCW GE + GP +V ETTE+++ ++ K+K +Q
Sbjct: 745 --------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790
Query: 171 RQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISERVGTVAYR 230
RQKSY +KRRK+LEFQ D V+L+ G GR +KL+P+++GPY++ ERVG VAY+
Sbjct: 791 RQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYK 850
Query: 231 VGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETMPLRIDNRKVKSLRG 290
+ LPP L+ H+VFHVSQLRK +++ + +++N+TVE P++I +R K RG
Sbjct: 851 LDLPPKLNAFHNVFHVSQLRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRG 910
Query: 291 KEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
K L++V+W E TWE E+KM+ ++ E F
Sbjct: 911 KSRDLLKVLWNCGGREQYTWETENKMKANFSEWF 944
>At4g07830 putative reverse transcriptase
Length = 611
Score = 254 bits (649), Expect = 4e-68
Identities = 136/291 (46%), Positives = 190/291 (64%), Gaps = 25/291 (8%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD +FTS FW++ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+LR+CVL+
Sbjct: 302 PVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDW 361
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
G HL L+EF YNNSY +SIGMAPFE LYG CRT LCW + GE + G D V E T
Sbjct: 362 RGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRT-LCWTQVGERSIYGADYVQEIT 420
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E++R+++ MK +Q+RQ+SY DKRRK+LEF+ GD V + G +S
Sbjct: 421 ERIRVLKLNMKEAQNRQRSYADKRRKELEFEVGDSV-------SQDGHVARS-------- 465
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
+RVG VA+R+ L + H VFHVS LRK + V+ + ++ N+T+E
Sbjct: 466 -----EQRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEA 520
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVV--WGGATGESLTWELESKMRESYPELF 324
P+R+ R++K LR K+IPL++V+ G T E TWE E++++ + + F
Sbjct: 521 RPVRVLERRIKELRRKKIPLIKVLRNCDGVTEE--TWEPEARLKARFKKWF 569
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 221 bits (564), Expect = 3e-58
Identities = 110/227 (48%), Positives = 152/227 (66%), Gaps = 19/227 (8%)
Query: 54 SLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGASDSHLPLIEFTYNNS 113
+ Q ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+ GG + +L L
Sbjct: 690 AFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLTL-------- 741
Query: 114 YHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETTEKVRMIREKMKASQSRQK 173
ALYG CRTPLCW GE + GP +V ETTE+++ ++ K+K + RQK
Sbjct: 742 -----------ALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAHDRQK 790
Query: 174 SYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISERVGTVAYRVGL 233
SY +KRRK+LEFQ GD V+L+ G GR +KL+P+++GPY++ ERVG VAY++ L
Sbjct: 791 SYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDL 850
Query: 234 PPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETMPLRI 280
PP L+ H+VFHVSQLRK ++D + +++N+TVE P+RI
Sbjct: 851 PPKLNAFHNVFHVSQLRKCLSDQEESVEDVPPGLKENMTVEAWPVRI 897
>At3g11970 hypothetical protein
Length = 1499
Score = 176 bits (447), Expect = 1e-44
Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 5/291 (1%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P+SIVSDRD FTS FW+ G L+L+SAYHPQ+DGQ+E + LE LR ++
Sbjct: 1213 PTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDR 1272
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
L L E+ YN +YHSS M PFE +YG L + V + + E
Sbjct: 1273 PQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQERE 1332
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALK-SRKLTPKF 214
+ + ++ + +Q R K + D+ R + EF+ GD+V++++ P ++ ++KL+PK+
Sbjct: 1333 DMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKY 1392
Query: 215 IGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVE 274
GPY+I +R G VAY++ LP + S +H VFHVSQL+ V + S + V ++D E
Sbjct: 1393 FGPYKIIDRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQD--VFE 1448
Query: 275 TMPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
+P ++ RK+ + +GK + V V W E TWE +++++PE A
Sbjct: 1449 KVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEFEA 1499
>At1g36590 hypothetical protein
Length = 1499
Score = 176 bits (447), Expect = 1e-44
Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 5/291 (1%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P+SIVSDRD FTS FW+ G L+L+SAYHPQ+DGQ+E + LE LR ++
Sbjct: 1213 PTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDR 1272
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
L L E+ YN +YHSS M PFE +YG L + V + + E
Sbjct: 1273 PQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQERE 1332
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALK-SRKLTPKF 214
+ + ++ + +Q R K + D+ R + EF+ GD+V++++ P ++ ++KL+PK+
Sbjct: 1333 DMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKY 1392
Query: 215 IGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVE 274
GPY+I +R G VAY++ LP + S +H VFHVSQL+ V + S + V ++D E
Sbjct: 1393 FGPYKIIDRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQD--VFE 1448
Query: 275 TMPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
+P ++ RK+ + +GK + V V W E TWE +++++PE A
Sbjct: 1449 KVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEFEA 1499
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 157 bits (398), Expect = 6e-39
Identities = 105/292 (35%), Positives = 160/292 (53%), Gaps = 11/292 (3%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSD DP F S FW+ +KL +S+AYHPQTDGQ+E + +E LR V
Sbjct: 649 PRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTDGQTEVVNRCIEQFLRCFVHYH 708
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGP--DLVHE 153
S +P E+ YN ++H+S GM PF+ALYG R +P+ +E G SVV G + +
Sbjct: 709 PKQWSSFIPWAEYWYNTTFHASTGMTPFQALYG-RPPSPIPAYELG-SVVCGELNEQMAA 766
Query: 154 TTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPL---TGVGRALKSRKL 210
E + +++ + + + K D R +D+ FQ GD V LR+ P T R+ S+KL
Sbjct: 767 RDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLRIQPYRQKTLFRRS--SQKL 824
Query: 211 TPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDN 270
+ +F GP+Q++ + G VAYR+ LP + +H VFHVS L+ +V D + + +R+N
Sbjct: 825 SHRFYGPFQVASKHGEVAYRLTLPEG-TRIHPVFHVSLLKPWVGDGEPDMGQLP-PLRNN 882
Query: 271 LTVETMPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPE 322
++ P + + +S K + + V W G E TWE ++ S+PE
Sbjct: 883 GELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQLAASFPE 934
>At3g31480 hypothetical protein
Length = 338
Score = 152 bits (383), Expect = 3e-37
Identities = 77/193 (39%), Positives = 116/193 (59%), Gaps = 42/193 (21%)
Query: 38 SIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGG 97
SIVSD+D +FTS FW + Q +G+K+++S+AYHP+TDG+ E+TIQ+LED+LR+
Sbjct: 58 SIVSDKDSKFTSAFWIAFQAEMGTKVQISTAYHPKTDGKFEKTIQTLEDMLRM------- 110
Query: 98 ASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETTEK 157
TPLCW + GE + G + VHETTE+
Sbjct: 111 -----------------------------------TPLCWTQVGERSIYGANYVHETTER 135
Query: 158 VRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGP 217
+++++ MK + RQ+SY D RR+++EF+ GD V+L++ L R + KL+PK++GP
Sbjct: 136 IQVLKLNMKEAHDRQRSYADMRRREVEFEVGDRVYLKMDMLQSPKRFILETKLSPKYMGP 195
Query: 218 YQISERVGTVAYR 230
++I ERVG VAYR
Sbjct: 196 FRIVERVGPVAYR 208
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 140 bits (354), Expect = 7e-34
Identities = 74/184 (40%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
Query: 143 SVVLGPDLVHETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVG 202
+ VL V E K+ + MK +Q RQ+SY DKRR++LEF+ GD V+L++ L G
Sbjct: 1054 AAVLAKKFVSEIV-KLHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPN 1112
Query: 203 RALKSRKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPR 262
R++ KL+P+++GP++I ERV VAYR+ LP + H VFHVS LRK + + +
Sbjct: 1113 RSISETKLSPRYMGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAK 1172
Query: 263 DDVQVRDNLTVETMPLRIDNRKVKSLRGKEIPLVRVVW--GGATGESLTWELESKMRESY 320
++ N+T+E P+R+ R++K LR K+IPL++V+W G T E TWE E++M+ +
Sbjct: 1173 IPEDLQPNMTLEARPVRVLERRIKELRQKKIPLIKVLWDCDGVTEE--TWEPEARMKARF 1230
Query: 321 PELF 324
+ F
Sbjct: 1231 KKWF 1234
>At1g35370 hypothetical protein
Length = 1447
Score = 134 bits (338), Expect = 5e-32
Identities = 93/282 (32%), Positives = 133/282 (46%), Gaps = 38/282 (13%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P+SIVSDRD FTS FWK G +LR+SSAYHPQ+DGQ+E + LE+ LR +
Sbjct: 1184 PTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHAR 1243
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
+ LPL E+ YN +YHSS M PFE +YG L + V + + E
Sbjct: 1244 PHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERE 1303
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALK-SRKLTPKF 214
+ ++ + +Q R K + D+ R + F GD V++++ P L+ ++KL+PK+
Sbjct: 1304 NMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKY 1363
Query: 215 IGPYQISER-----VGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRD 269
GPY+I E+ VG V LP S L D+F
Sbjct: 1364 FGPYKIIEKCGEVMVGNVTTSTQLP---SVLPDIF------------------------- 1395
Query: 270 NLTVETMPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWE 311
E P I RK+ +G+ +V V W G E TW+
Sbjct: 1396 ----EKAPEYILERKLVKRQGRAATMVLVKWIGEPVEEATWK 1433
>At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein
Length = 280
Score = 94.7 bits (234), Expect = 6e-20
Identities = 70/242 (28%), Positives = 114/242 (46%), Gaps = 25/242 (10%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SI SDRD +F S FW +L G+ L SS H Q DGQ+E T ++L +++R +
Sbjct: 57 PKSITSDRDTKFLSHFWSTLWRMFGTALNRSSTPHTQIDGQTEVTNRTLGNMVRSICGDN 116
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
D LP IEF YN+ H + + G T + E
Sbjct: 117 PKQWDLALPQIEFAYNSVVH-VVDLVKLPKALGASAET----------------MAEEIL 159
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKS--RKLTPK 213
+++ K++A+ + K DKRR+ F+EGD V + L GR K+ P+
Sbjct: 160 VVKEVVKAKLEATGKKNKVAADKRRRFKVFKEGDDVMV----LLRKGRFAVGTYNKVKPR 215
Query: 214 FIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTV 273
GP+++ ++ AY V LP + N+ + F+V+ + +Y AD + P ++++ +
Sbjct: 216 KYGPFKVLRKINDNAYVVALPKSM-NISNTFNVADIHEYHAD-GVLYPEENLRTSSSEVE 273
Query: 274 ET 275
ET
Sbjct: 274 ET 275
>At4g07850 putative polyprotein
Length = 1138
Score = 93.2 bits (230), Expect = 2e-19
Identities = 46/100 (46%), Positives = 64/100 (64%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P +IVSDRD +F S FWK+L LG+KL S+ HPQTDGQ+E ++L LLR + +
Sbjct: 891 PKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKN 950
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPL 135
+ LP +EF YN+S HS+ +PF+ +YG+ TPL
Sbjct: 951 LKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPL 990
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 83.2 bits (204), Expect = 2e-16
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 120 MAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETTEKVRMIREKMKASQSRQKSYHDKR 179
M P+EA+YG L + V + + E + ++ + +Q R K D+
Sbjct: 625 MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684
Query: 180 RKDLEFQEGDHVFLRVTPLTGVGRALKS-RKLTPKFIGPYQISERVGTVAYRVGLPPHLS 238
+ EF+ GD+VF+++ P ++S +KL+PK+ GPY++ +R G VAY++ LP + S
Sbjct: 685 ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPAN-S 743
Query: 239 NLHDVFHVSQLRKY---VADPSHVIPRDDVQVRDNL 271
+H VFHVSQLR V +H++ + +R+NL
Sbjct: 744 QVHPVFHVSQLRVLVGTVTTSTHLLRCYLMSLRENL 779
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,540,229
Number of Sequences: 26719
Number of extensions: 268611
Number of successful extensions: 788
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 54
length of query: 325
length of database: 11,318,596
effective HSP length: 100
effective length of query: 225
effective length of database: 8,646,696
effective search space: 1945506600
effective search space used: 1945506600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC137081.4