BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137079.15 + phase: 0 /pseudo
         (864 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g57640                                                             780  0.0
At1g70010 hypothetical protein                                        768  0.0
At2g16000 putative retroelement pol polyprotein                       753  0.0
At2g20460 putative retroelement pol polyprotein                       744  0.0
At2g23330 putative retroelement pol polyprotein                       732  0.0
At2g13940 putative retroelement pol polyprotein                       725  0.0
At4g14460 retrovirus-related like polyprotein                         688  0.0
At4g17450 retrotransposon like protein                                682  0.0
At1g26990 polyprotein, putative                                       665  0.0
At4g07810 putative polyprotein                                        615  e-176
At4g02960 putative polyprotein of LTR transposon                      580  e-166
At1g31210 putative reverse transcriptase                              558  e-159
At4g10990 putative retrotransposon polyprotein                        546  e-155
At2g07010 putative retroelement pol polyprotein                       533  e-151
At4g10690 retrotransposon like protein                                528  e-150
At1g36620 hypothetical protein                                        513  e-145
At4g23160 putative protein                                            509  e-144
At2g06840 putative retroelement pol polyprotein                       506  e-143
At4g27210 putative protein                                            505  e-143
At4g22040 LTR retrotransposon like protein                            483  e-136

>At1g57640
          Length = 1444

 Score =  780 bits (2014), Expect = 0.0
 Identities = 401/868 (46%), Positives = 570/868 (65%), Gaps = 33/868 (3%)

Query: 29   FDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFD 88
            FD+WH RLGH S   ++++ ++            CD C  AKQ R  FP S  +S   F 
Sbjct: 489  FDLWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQ 548

Query: 89   LLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHT 148
            L+H D+WGPY  PS+ G +YFLT+VDDYSR  WV  +  K ETQKHLK FI+ VE QF T
Sbjct: 549  LIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDT 608

Query: 149  TLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHSH 208
             +K +RSDNG+EF+ M  + L KGI H  +CV TP QNG VERKH+HILN+AR+L F S+
Sbjct: 609  EIKIVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSY 668

Query: 209  VPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHR 268
            +PI  W   +  A ++INR PS LL+ KSP+E+L+K  P   HL+VFG L YA       
Sbjct: 669  LPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKG 728

Query: 269  TKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPFTLAT--------- 319
             KF  R+R+ +F+G+  G KG  L+DL   + FVSR+VIF E  FP++  +         
Sbjct: 729  DKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNEEDERVL 788

Query: 320  ---------KQANIPTTSSHIDLGDPIT--DLSPHPISAPEFQLTSTPPSQYVS------ 362
                     ++A  P T    ++G+     +++  PI  PE    S+ PS++VS      
Sbjct: 789  VDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVATGPI-IPEINQESSSPSEFVSLSSLDP 847

Query: 363  ---APAVQHA-IPVTDSISEPT-VRKSTRISQRPSYLADYHCNLPS-KSCSNVSSGISSY 416
               +  VQ A +P++ +   P  +R+S+R +Q+P  L ++  N  S +S S  +S  S Y
Sbjct: 848  FLASSTVQTADLPLSSTTPAPIQLRRSSRQTQKPMKLKNFVTNTVSVESISPEASSSSLY 907

Query: 417  PLSSFLSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVV 476
            P+  ++     + ++  F   +++  EP T+ +A   + WREAM+ E+ +L  N T+S+V
Sbjct: 908  PIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIV 967

Query: 477  TLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRV 536
             LPPGK  +G KWVYK+KY ++G+IERYKARLV  G  Q EGVDY +TF+PVAK++T+R+
Sbjct: 968  NLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRL 1027

Query: 537  LLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCKLNKSLYGLKQAS 596
             L +AA + WH+ Q+DV+NAFLHGDL EEVYM LP G+   + S+VC+L+KSLYGLKQA 
Sbjct: 1028 FLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAP 1087

Query: 597  RQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTF 656
            R W+SKLS++L  +G+TQSL+DYSLF   +   F  +LVYVDD++++G+C   +   K++
Sbjct: 1088 RCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSY 1147

Query: 657  LDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTK 716
            L++ F +KDLG L+YFLG E++R+  G  L+QRKY L+++ + G LG++P+A P + + K
Sbjct: 1148 LESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHK 1207

Query: 717  LGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKY 776
            L  +T    +D+S YRRL+GRL+YL  TRP++SYSV  L+QF+  P   H+ AA R+++Y
Sbjct: 1208 LSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRY 1267

Query: 777  LKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVS 836
            LKS+P +G+  SS+S L+++G+ DSD+A CP TRRS+TGY V LG + ISWK+KKQ TVS
Sbjct: 1268 LKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTVS 1327

Query: 837  RSSTEAEYRALAHLTCELQWLNYLFHDL 864
            RSS EAEYRA+A LT EL WL  + +DL
Sbjct: 1328 RSSAEAEYRAMAFLTQELMWLKRVLYDL 1355


>At1g70010 hypothetical protein
          Length = 1315

 Score =  768 bits (1982), Expect = 0.0
 Identities = 404/876 (46%), Positives = 563/876 (64%), Gaps = 39/876 (4%)

Query: 3    VGGLYLI----AAGPSLANKLSCNSVFTDCFDVWHMRLGHVSSSGLSVISKQFPFIPCIK 58
            V  LY++     + P   + ++  SV +   D+WH RLGH S   L  +S    F P  K
Sbjct: 376  VANLYIVDLDSLSHPGTDSSITVASVTSH--DLWHKRLGHPSVQKLQPMSSLLSF-PKQK 432

Query: 59   NAPP--CDACHYAKQKRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDY 116
            N     C  CH +KQK LPF   + KSS PFDL+H D WGP+S  +  G++YFLT+VDDY
Sbjct: 433  NNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDY 492

Query: 117  SRFTWVIFLKTKDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIHH 176
            SR TWV  L+ K +    +  F++ VENQF TT+K +RSDN  E +  T F  SKGI+ +
Sbjct: 493  SRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPE-LNFTQFYHSKGIVPY 551

Query: 177  KTCVETPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFK 236
             +C ETPQQN VVERKHQHILNVARSL F SH+PI+ W   +  AV++INR+P+P+L+ K
Sbjct: 552  HSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDK 611

Query: 237  SPFELLHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLN 296
             PFE+L K  P+  H+KVFGCL YAST    R KF+PRA+   F+G+  G KG  L DL 
Sbjct: 612  CPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLE 671

Query: 297  SNELFVSRNVIFYENHFPFT---LATKQANIPTTSSHIDLGDPITDLSPHPISAPEFQLT 353
            ++ + VSR+V+F+E  FPF    L+ ++ N               DL+P P    +    
Sbjct: 672  THSIIVSRHVVFHEELFPFLGSDLSQEEQNF------------FPDLNPTPPMQRQSSDH 719

Query: 354  STPPSQYVSAPAVQHAIPVTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGI 413
              P     S   +  A P T+++ EP+V+ S R +++P+YL DY+C+      S VSS  
Sbjct: 720  VNPSDSSSSVEILPSANP-TNNVPEPSVQTSHRKAKKPAYLQDYYCH------SVVSS-- 770

Query: 414  SSYPLSSFLSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTW 473
            + + +  FLSYD  +  Y  F   +    EP  + +A K + WR+AM  E + L   +TW
Sbjct: 771  TPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTW 830

Query: 474  SVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTT 533
             V +LP  K  IGC+W++K+KY+++GS+ERYKARLVAQGYTQ EG+DY +TFSPVAKL +
Sbjct: 831  EVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNS 890

Query: 534  IRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPT-----INSSQVCKLNKS 588
            +++LL +AA     L QLD++NAFL+GDL EE+YM LP GY +     +  + VC+L KS
Sbjct: 891  VKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKS 950

Query: 589  LYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCIS 648
            LYGLKQASRQWY K S++L+  G+ QS  D++ F+K+S   F  +LVY+DDI++A N  +
Sbjct: 951  LYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDA 1010

Query: 649  EIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAA 708
             +  +K+ + + F ++DLG+L+YFLG EI RS  GI ++QRKY L+LL++ G LG KP++
Sbjct: 1011 AVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSS 1070

Query: 709  TPFDPSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQ 768
             P DPS      +G  F +   YRRLIGRL+YL  TRPDI+++V  L+QF   P   H Q
Sbjct: 1071 IPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQ 1130

Query: 769  AAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWK 828
            A  +IL+Y+K +  +GLF+S++SEL+L  +A++D+  C D+RRS +GYC+ LG SLI WK
Sbjct: 1131 AVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWK 1190

Query: 829  SKKQSTVSRSSTEAEYRALAHLTCELQWLNYLFHDL 864
            S+KQ  VS+SS EAEYR+L+  T EL WL     +L
Sbjct: 1191 SRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKEL 1226


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  753 bits (1943), Expect = 0.0
 Identities = 401/861 (46%), Positives = 539/861 (62%), Gaps = 42/861 (4%)

Query: 3    VGGLYLIAAGPSLANKLSCNSVFTDCFDVWHMRLGHVSSSGLSVISKQFPFIPCI-KNAP 61
            V  LYL+  G      +S N+V      +WH RLGH S   L  IS          K + 
Sbjct: 534  VANLYLLDVGDQ---SISVNAVVD--ISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSD 588

Query: 62   PCDACHYAKQKRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTW 121
             C  CH AKQ++L FP S+      FDLLH D+WGP+S  +  G+KYFLT+VDD+SR TW
Sbjct: 589  FCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATW 648

Query: 122  VIFLKTKDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVE 181
            +  LKTK E       FI  VENQ+   +K +RSDN  E +  TSF   KGI+   +C E
Sbjct: 649  MYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPE-LKFTSFYAEKGIVSFHSCPE 707

Query: 182  TPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFEL 241
            TP+QN VVERKHQHILNVAR+L F S VP+++W   V  AV +INR PS LL  K+P+E+
Sbjct: 708  TPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEI 767

Query: 242  LHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELF 301
            L    P    L+ FGCL Y+ST    R KF PR+R  +FLG+  G KG  L DL SN +F
Sbjct: 768  LTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVF 827

Query: 302  VSRNVIFYENHFPFTLATKQANIPTTSSHIDLGDPITDLSPHPISAPEFQLTSTPPSQYV 361
            +SRNV F+E  FP       A  P + S + L  P+      P+S+     T+  PS   
Sbjct: 828  ISRNVQFHEEVFPL------AKNPGSESSLKLFTPMV-----PVSSGIISDTTHSPS--- 873

Query: 362  SAPAVQHAIPVTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLSSF 421
                   ++P   S   P +  S R+ + P++L DYHCN               YP+SS 
Sbjct: 874  -------SLPSQISDLPPQI-SSQRVRKPPAHLNDYHCNTMQSD--------HKYPISST 917

Query: 422  LSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPG 481
            +SY   SP++  +   I+ I  P  +A+A  ++ W EA+  E+ A+ K NTW + TLP G
Sbjct: 918  ISYSKISPSHMCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKG 977

Query: 482  KVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLA 541
            K  +GCKWV+ +K+ A+G++ERYKARLVA+GYTQ EG+DY DTFSPVAK+TTI++LL ++
Sbjct: 978  KKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVS 1037

Query: 542  AIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYP-----TINSSQVCKLNKSLYGLKQAS 596
            A K W L+QLDV+NAFL+G+L EE++M +P GY       + S+ V +L +S+YGLKQAS
Sbjct: 1038 ASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQAS 1097

Query: 597  RQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTF 656
            RQW+ K S+SL+S G+ ++  D++LF+K+    F  +LVYVDDIV+A    +    +   
Sbjct: 1098 RQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEE 1157

Query: 657  LDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTK 716
            LD +F ++DLG L+YFLG E+AR+ +GI + QRKY LELL+  G L  KP + P  P+ K
Sbjct: 1158 LDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLK 1217

Query: 717  LGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKY 776
            +    G    D   YRR++G+L+YLT TRPDI+++V  L QF S P   H  AA R+L+Y
Sbjct: 1218 MRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQY 1277

Query: 777  LKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVS 836
            +K +  +GLF+S+SS+L L GFADSDWA C D+RRS T + + +G SLISW+SKKQ TVS
Sbjct: 1278 IKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVS 1337

Query: 837  RSSTEAEYRALAHLTCELQWL 857
            RSS EAEYRALA  TCE+ WL
Sbjct: 1338 RSSAEAEYRALALATCEMVWL 1358


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  744 bits (1922), Expect = 0.0
 Identities = 395/864 (45%), Positives = 546/864 (62%), Gaps = 46/864 (5%)

Query: 3    VGGLYLIAAGPSLANKLSCNSVFTDCFDVWHMRLGHVSSSGLSVISKQFPFIPCI-KNAP 61
            +G LY++    + +  +S N+V      VWH RLGH S S L  +S+         K + 
Sbjct: 545  IGNLYVL---DTQSPAISVNAVVD--VSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSA 599

Query: 62   PCDACHYAKQKRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTW 121
             C  CH AKQK+L FP ++   ++ F+LLH D+WGP+S  +  G+KYFLT+VDD+SR TW
Sbjct: 600  YCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATW 659

Query: 122  VIFLKTKDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVE 181
            +  LK+K +       FI  VENQ+ T +K +RSDN  E +A T F  +KGI+   +C E
Sbjct: 660  IYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKE-LAFTEFYKAKGIVSFHSCPE 718

Query: 182  TPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFEL 241
            TP+QN VVERKHQHILNVAR+L F S++ +  W   V  AV +INR PS LL  K+PFE+
Sbjct: 719  TPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEV 778

Query: 242  LHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELF 301
            L  + P    LK FGCL Y+ST    R KF PR+R  +FLG+  G KG  L DL SN + 
Sbjct: 779  LTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVH 838

Query: 302  VSRNVIFYENHFPFTLATKQANIPTTSSHIDLGDPITDLSPHPISAPEFQLTSTPPSQYV 361
            +SRNV F+E  FP  LA+ Q +  T S      DP++  +          +TS  PS  +
Sbjct: 839  ISRNVEFHEELFP--LASSQQSATTASDVFTPMDPLSSGN---------SITSHLPSPQI 887

Query: 362  SAPAVQHAIPVTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLSSF 421
            S P+ Q +                RI++ P++L DYHC   +K          S+P+SS 
Sbjct: 888  S-PSTQIS--------------KRRITKFPAHLQDYHCYFVNKD--------DSHPISSS 924

Query: 422  LSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPG 481
            LSY   SP++  +   IS I  P+++ +A  S+ W  A+  E+ A+ + +TW + +LPPG
Sbjct: 925  LSYSQISPSHMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPG 984

Query: 482  KVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLA 541
            K  +GCKWV+ VK+HA+GS+ER+KAR+VA+GYTQ EG+DY +TFSPVAK+ T+++LL ++
Sbjct: 985  KKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVS 1044

Query: 542  AIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQ-----VCKLNKSLYGLKQAS 596
            A K W+L QLD++NAFL+GDL E +YM LP GY  I  +      VC+L KS+YGLKQAS
Sbjct: 1045 ASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQAS 1104

Query: 597  RQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTF 656
            RQW+ K S SL++ G+ +   D++LFV+  G+ F  LLVYVDDIV+A       +S+   
Sbjct: 1105 RQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEA 1164

Query: 657  LDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTK 716
            L   F +++LG L+YFLG E+AR+  GI L+QRKY LELL  A  L  KP++ P  P+ +
Sbjct: 1165 LKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIR 1224

Query: 717  LGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKY 776
            L    G    D   YRRL+G+L+YLT TRPDI+++V  L QF S P   H  A  ++L+Y
Sbjct: 1225 LSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQY 1284

Query: 777  LKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVS 836
            +K +  +GLF+S+  +L L G+ D+DW  CPD+RRS TG+ + +GSSLISW+SKKQ TVS
Sbjct: 1285 IKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVS 1344

Query: 837  RSSTEAEYRALAHLTCELQWLNYL 860
            RSS EAEYRALA  +CE+ WL+ L
Sbjct: 1345 RSSAEAEYRALALASCEMAWLSTL 1368


>At2g23330 putative retroelement pol polyprotein
          Length = 1496

 Score =  732 bits (1889), Expect = 0.0
 Identities = 397/917 (43%), Positives = 546/917 (59%), Gaps = 75/917 (8%)

Query: 22   NSVFTDCFDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSI 81
            +S F    D+WH RLGH S+S L  + +             CD C  +KQ R  FP S+ 
Sbjct: 492  SSDFAISGDLWHRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNN 551

Query: 82   KSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISY 141
            K+   F L+H D+WGPY TPS  G  YFLTLVDDYSR  W   + +K E  + +K+F + 
Sbjct: 552  KTMECFSLIHGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAM 611

Query: 142  VENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVAR 201
             E QF   +K  R+DNG+EF+ +T +  + GI+H  +CV+TPQQNG VERKH+HILNVAR
Sbjct: 612  SERQFGKQVKAFRTDNGTEFMCLTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVAR 671

Query: 202  SLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYA 261
            +  F  ++P+  W  ++  A H+INR PS +LK K+P+ELL  E PS   L+ FGCL YA
Sbjct: 672  ACLFQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDMLRSFGCLCYA 731

Query: 262  STLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPFTLATKQ 321
                 ++ KF  R+RK +F+G+  G K   +YDL + ++F SR+V F+E+ +P+  AT Q
Sbjct: 732  HIRPRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATAT-Q 790

Query: 322  ANI----------------------------------PTTSSHIDLGDPITDLSPH---- 343
            +N+                                  P  S  ID      D SP     
Sbjct: 791  SNVPLPPPTPPMVNDDWFLPISTQVDSTNVDSSSSSSPAQSGSIDQPPRSIDQSPSTSTN 850

Query: 344  ----------PISAPE---------------FQLTSTPPSQYVSAPAV-----------Q 367
                      P S+P                 +L ST  S   S+P +           +
Sbjct: 851  PVPEEIGSIVPSSSPSRSIDRSTSDLSASDTTELLSTGESSTPSSPGLPELLGKGCREKK 910

Query: 368  HAIPVTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLSSFLSYDNC 427
             ++ + D ++  T +K T      S        LP+   ++  SG + YPLS FL+    
Sbjct: 911  KSVLLKDFVTNTTSKKKTASHNIHSPSQVLPSGLPTSLSADSVSGKTLYPLSDFLTNSGY 970

Query: 428  SPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGC 487
            S  +  F   I   NEPK F  A   + W EAM+ E++AL  N+TW +  LP GK  I  
Sbjct: 971  SANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISS 1030

Query: 488  KWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWH 547
            KWVYK+KY+++G++ER+KARLV  G  Q EGVD+ +TF+PVAKLTT+R +L++AA K W 
Sbjct: 1031 KWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWE 1090

Query: 548  LEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCKLNKSLYGLKQASRQWYSKLSTSL 607
            + Q+DV+NAFLHGDL EEVYM LPPG+   + S+VC+L KSLYGLKQA R W+SKLST+L
Sbjct: 1091 VHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTAL 1150

Query: 608  ISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLG 667
             + G+TQS  DYSLF   +G +   +LVYVDD+++AGN +  I   K+ L   F +KDLG
Sbjct: 1151 RNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLG 1210

Query: 668  QLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFTD 727
            +L+YFLG E++R   G  L+QRKY L+++++ G LG KP+A P   + KL + TG  FT+
Sbjct: 1211 KLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTN 1270

Query: 728  ASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFF 787
               YRRL+GR +YLT TRPD+SY+V  LSQF+  P+V H++AA R+++YLK SPA+G+F 
Sbjct: 1271 PEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFL 1330

Query: 788  SSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRAL 847
             S S L ++ + DSD+  CP TRRS++ Y V LG S ISWK+KKQ TVS SS EAEYRA+
Sbjct: 1331 RSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAM 1390

Query: 848  AHLTCELQWLNYLFHDL 864
            A+   EL+WL  L  DL
Sbjct: 1391 AYTLKELKWLKALLKDL 1407


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  725 bits (1871), Expect = 0.0
 Identities = 390/887 (43%), Positives = 526/887 (58%), Gaps = 56/887 (6%)

Query: 31   VWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDLL 90
            +WH RLGH S S LS +   F        +  CD C  AKQ R  FP S  K+   F L+
Sbjct: 529  LWHQRLGHPSFSVLSSLPL-FSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLI 587

Query: 91   HADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHTTL 150
            H D+WGPY  P+  G  YFLT+VDDYSR  W   L  K E ++ L +F+ Y E QF  T+
Sbjct: 588  HCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTV 647

Query: 151  KCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHSHVP 210
            K +RSDNG+EF+ ++S+    GIIH  +CV TPQQNG VERKH+HILNVAR+L F + +P
Sbjct: 648  KMVRSDNGTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLP 707

Query: 211  ITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHRTK 270
            I  W  ++  A ++INR PS +L  ++P+E+LH   P    L+VFG   Y   +   + K
Sbjct: 708  IKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKPVYSQLRVFGSACYVHRVTRDKDK 767

Query: 271  FNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPF------TLATKQANI 324
            F  R+R  IF+G+  G KG  +YD+  NE  VSR+VIF E  FP+      TLA+   ++
Sbjct: 768  FGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIFREEVFPYAGVNSSTLAS--TSL 825

Query: 325  PTTSSHIDLGDP-------------------------ITDLSPHPISAPEFQLTSTPPSQ 359
            PT S   D   P                          T +S   I   EF    TPPS 
Sbjct: 826  PTVSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVVLDTSVSDSEIPNQEFVPDDTPPSS 885

Query: 360  YVS--------APAVQHAIPVTDSI--SEPTVRKSTRISQRPSYLADY------------ 397
             +S         P     +PV   I  S P  RKS R +  P  L DY            
Sbjct: 886  PLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSKRATHPPPKLNDYVLYNAMYTPSSI 945

Query: 398  HCNLPSKSCSNVSSGISSYPLSSFLSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWR 457
            H      S S+   G S +PL+ ++S    S ++  +   I+   EPK F +A + + W 
Sbjct: 946  HALPADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRAYLAAITDNVEPKHFKEAVQIKVWN 1005

Query: 458  EAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTE 517
            +AM TE++AL  N TW +V LPPGKV IG +WV+K KY+++G++ERYKARLV QG  Q E
Sbjct: 1006 DAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVE 1065

Query: 518  GVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTI 577
            G DY +TF+PV ++TT+R LL   A   W + Q+DV+NAFLHGDL EEVYM LPPG+   
Sbjct: 1066 GEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHS 1125

Query: 578  NSSQVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYV 637
            +  +VC+L KSLYGLKQA R W+ KLS SL+ FG+ QS  DYSLF          +L+YV
Sbjct: 1126 HPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYV 1185

Query: 638  DDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLE 697
            DD+++ GN    ++  K +L   F +KDLG+L+YFLG E++R   GI L+QRKY L+++ 
Sbjct: 1186 DDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIA 1245

Query: 698  DAGTLGSKPAATPFDPSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQ 757
            D+G LGS+PA TP + +  L +  G   +D   YRRL+GRLLYL +TRP++SYSV  L+Q
Sbjct: 1246 DSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQ 1305

Query: 758  FVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYC 817
            F+  P   H+ AA R+++YLK SP +G+  ++  +L L  + DSDW  CP TRRS++ Y 
Sbjct: 1306 FMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYV 1365

Query: 818  VLLGSSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQWLNYLFHDL 864
            VLLG S ISWK+KKQ TVS SS EAEYRA+++   E++WL  L  +L
Sbjct: 1366 VLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKEL 1412


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score =  688 bits (1775), Expect = 0.0
 Identities = 386/909 (42%), Positives = 530/909 (57%), Gaps = 126/909 (13%)

Query: 2    LVGGLYLIAA---GPSLANKLSC---NSVFTDCFDVWHMRLGHVSSSGLSVISKQFPFIP 55
            L   LY++      PS +   +C    SV  D   +WH RLGH SS  L           
Sbjct: 567  LYHNLYILETENTSPSTSTPAACLFTGSVLNDGH-LWHQRLGHPSSVVLQ---------- 615

Query: 56   CIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDD 115
                          K KRL +   +  +S PFDL+H D+WGP+S  S  G +YFLT+VDD
Sbjct: 616  --------------KLKRLAYISHNNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVDD 661

Query: 116  YSRFTWVIFLKTKDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIH 175
             +R TWV  L+ K +       FI  V  QF+  +K +RSDN  E +  T  +   G++H
Sbjct: 662  CTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPE-LGFTEIVKEHGMLH 720

Query: 176  HKTCVETPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKF 235
            H +C  TPQQN VVERKHQHILNVAR+L F S++P+  W+  V  AV +INR+PSPLL  
Sbjct: 721  HFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLLNN 780

Query: 236  KSPFELLHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDL 295
            KSP+EL+  + P    LK FGCL + ST    RTKF PRAR  +FLG+  G KG  + DL
Sbjct: 781  KSPYELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDL 840

Query: 296  NSNELFVSRNVIFYENHFPFTLAT--KQANIPTTSSHIDLGDPITDLSPHPISAPEFQLT 353
             S+ + VSRNV+F E+ FPF  +    +A     +S + L  P+  +   P+   +  + 
Sbjct: 841  ESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILPLPAPLHFVETMPLIDEDSLIP 900

Query: 354  STPPSQYV------SAPAVQHAIPVT--------DSISEPTVRKSTRISQRPSYLADYHC 399
            +T  S+        S+ A+   IP +        DS + P  R S R ++ PSYL++YHC
Sbjct: 901  TTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDSNAVPITR-SKRTTRAPSYLSEYHC 959

Query: 400  NL-------------------PSKSCSNVSSGISSYPLSSFLSYDNCSPTYTHFCCTISS 440
            +L                   P    ++     + YP+S+ +SYD  +P    +    ++
Sbjct: 960  SLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIFAYNT 1019

Query: 441  INEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKVKYHANGS 500
              EPKTF+QA KSE W      EL A+  N TWSV +LPP K  +GCKWV+ +KY+ +G+
Sbjct: 1020 ETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYNPDGT 1079

Query: 501  IERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHG 560
            +ERYKARLVAQG+TQ EG+D+ DTFSPVAKLT+ +++L LAAI GW L Q+DV++AFLHG
Sbjct: 1080 VERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDAFLHG 1139

Query: 561  DLHEEVYMALPPGYPT-----INSSQVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQS 615
            DL EE++M+LP GY       +  + VC+L KS+YGLKQASRQWY +             
Sbjct: 1140 DLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR------------- 1186

Query: 616  LADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGF 675
                          F A LVY+DDI++A N  +E++++K  L ++F IKDLG  R+FLG 
Sbjct: 1187 --------------FVAALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFLGL 1232

Query: 676  EIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFTDASSYRRLI 735
                                      LG KP++ P DP+  L    GTP  + ++YR+LI
Sbjct: 1233 --------------------------LGCKPSSIPMDPTLHLVRDMGTPLPNPTAYRKLI 1266

Query: 736  GRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKL 795
            GRLLYLT TRPDI+Y+V  LSQF+S P   H QAA ++L+Y+K++P +GL +S+  E+ L
Sbjct: 1267 GRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEICL 1326

Query: 796  HGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQ 855
            +GF+D+DWA C DTRRS++G+C+ LG+SLISWKSKKQ+  SRSSTE+EYR++A  TCE+ 
Sbjct: 1327 NGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEII 1386

Query: 856  WLNYLFHDL 864
            WL  L  DL
Sbjct: 1387 WLQQLLKDL 1395


>At4g17450 retrotransposon like protein
          Length = 1433

 Score =  682 bits (1761), Expect = 0.0
 Identities = 369/854 (43%), Positives = 510/854 (59%), Gaps = 66/854 (7%)

Query: 21   CNSVFTDCFDVWHMRLGHVSSSGLSVISK--QFPFIPCIKNAPP----CDACHYAKQKRL 74
            C+SV  D    WH RLGH + S + ++S           K   P    C  CH +KQK L
Sbjct: 543  CSSVVVDSV-TWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHL 601

Query: 75   PFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKH 134
             F       SA FDL+H D WGP+S P+              +  TW+  LK K +    
Sbjct: 602  SFQSRQNMCSAAFDLVHIDTWGPFSVPT--------------NDATWIYLLKNKSDVLHV 647

Query: 135  LKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQ 194
               FI+ V  Q+ T LK +RSDN  E +  T    + GI+ + +C ETP+QN VVERKHQ
Sbjct: 648  FPAFINMVHTQYQTKLKSVRSDNAHE-LKFTDLFAAHGIVAYHSCPETPEQNSVVERKHQ 706

Query: 195  HILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKV 254
            HILNVAR+L F S++P+  W   V  AV +INR+P+P+L  KSP+E L   PP+   LK 
Sbjct: 707  HILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKT 766

Query: 255  FGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFP 314
            FGCL Y+ST    R KF PRAR  +FLG+  G KG  L D+ ++ + +SR+VIF+E+ FP
Sbjct: 767  FGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFP 826

Query: 315  FTLATKQANIPTTSSHIDLGDPITDLSPHPISAPEFQLTSTPPSQYVSAPAVQHAIPVTD 374
            F  +T + +I      +       DL   P+   +  +  T P Q VS+     A+   D
Sbjct: 827  FISSTIKDDIKDFFPLLQFPARTDDL---PLE--QTSIIDTHPHQDVSS---SKALVPFD 878

Query: 375  SISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLSSFLSYDNCSPTYTHF 434
             +S+       R  + P +L D+HC                        Y+N +  +  F
Sbjct: 879  PLSK-------RQKKPPKHLQDFHC------------------------YNNTTEPFHAF 907

Query: 435  CCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKVK 494
               I++   P+ +++A   + W +AM  E+ A+ + NTWSVV+LPP K  IGCKWV+ +K
Sbjct: 908  INNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIK 967

Query: 495  YHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVN 554
            ++A+GSIERYKARLVA+GYTQ EG+DY +TFSPVAKLT++R++L LAA   W + QLD++
Sbjct: 968  HNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDIS 1027

Query: 555  NAFLHGDLHEEVYMALPPGY-----PTINSSQVCKLNKSLYGLKQASRQWYSKLSTSLIS 609
            NAFL+GDL EE+YM +PPGY       +    +C+L+KS+YGLKQASRQWY KLS +L  
Sbjct: 1028 NAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKG 1087

Query: 610  FGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQL 669
             G+ +S AD++LF+K +      +LVYVDDI++  N    +      L + F ++DLG  
Sbjct: 1088 MGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAA 1147

Query: 670  RYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFTDAS 729
            +YFLG EIARS+ GI + QRKY LELL   G LGSKP++ P DPS KL    G P TD++
Sbjct: 1148 KYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDST 1207

Query: 730  SYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSS 789
            SYR+L+G+L+YL  TRPDI+Y+V  L QF   P   H  A  ++L+YLK +  +GLF+S+
Sbjct: 1208 SYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSA 1267

Query: 790  SSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRALAH 849
              +  L G+ DSD+  C D+RR V  YC+ +G  L+SWKSKKQ TVS S+ EAE+RA++ 
Sbjct: 1268 DDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQ 1327

Query: 850  LTCELQWLNYLFHD 863
             T E+ WL+ LF D
Sbjct: 1328 GTKEMIWLSRLFDD 1341


>At1g26990 polyprotein, putative
          Length = 1436

 Score =  665 bits (1717), Expect = 0.0
 Identities = 366/870 (42%), Positives = 511/870 (58%), Gaps = 59/870 (6%)

Query: 1    SLVGGLYLIAAGPSLAN------KLSCNSVFTDCFDVWHMRLGHVSSSGLSVISK--QFP 52
            S VG LY++    SL +      K  C+SV  +  ++WH RLGH S + +  +S     P
Sbjct: 522  SQVGNLYILNLDKSLVDVSSFPGKSVCSSVKNES-EMWHKRLGHPSFAKIDTLSDVLMLP 580

Query: 53   FIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTL 112
                 K++  C  CH +KQK LPF   +      F+L+H D WGP+S P+   ++YFLT+
Sbjct: 581  KQKINKDSSHCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLTI 640

Query: 113  VDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKG 172
            VDD+SR TW+  LK K +       F+  VE Q+HT +  +RSDN  E +        +G
Sbjct: 641  VDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHE-LKFNELFAKEG 699

Query: 173  IIHHKTCVETPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPL 232
            I     C ETP+QN VVERKHQH+LNVAR+L F S +P+  W   V  AV +INR+ SP+
Sbjct: 700  IKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPV 759

Query: 233  LKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSIL 292
            +  ++P+E L K  P    LK FGCL Y ST    RTKF+PRA+  IFLG+  G KG  L
Sbjct: 760  INNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKL 819

Query: 293  YDLNSNELFVSRNVIFYENHFPFTLATKQANIPTTSSHIDLGDPITDLSPHPISAPEFQL 352
             D+ +  + +SR+VIFYE+ FPF            SS+I   D   D  PH I  P    
Sbjct: 820  LDIETYSVSISRHVIFYEDIFPFA-----------SSNIT--DAAKDFFPH-IYLPAPNN 865

Query: 353  TSTPPSQYVSAPAVQHAIPVTDSISEPTVRKSTRISQRPSYLADYHC--NLPSKSCSNVS 410
                P    S+ A  +    +  I  P+  KSTR  + PS+L D+HC  N P+      +
Sbjct: 866  DEHLPLVQSSSDAPHNHDESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPT------T 919

Query: 411  SGISSYPLSSFLSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKN 470
            +  S YPL++++SY   S  +  F   I++   P+ +++A   + W +AM  E++A  + 
Sbjct: 920  TKTSPYPLTNYISYSYLSEPFGAFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVRT 979

Query: 471  NTWSVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAK 530
             TWS+  LP GKV +GCKW+  +K+ A+GSIER+KARLVA+GYTQ EG+D+F+TFSPVAK
Sbjct: 980  GTWSICDLPAGKVAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAK 1039

Query: 531  LTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCKLNKSLY 590
            + T++VLLSLA    W+L QLD++NA L+GDL EE+YM LPPGY  I   +V   N   +
Sbjct: 1040 MVTVKVLLSLAPKMKWYLHQLDISNALLNGDLEEEIYMKLPPGYSEIQGQEVSP-NAKCH 1098

Query: 591  GLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEI 650
            G                          D++LFVK     F  +LVYVDDI++A    +  
Sbjct: 1099 G--------------------------DHTLFVKAQDGFFLVVLVYVDDILIASTTEAAS 1132

Query: 651  KSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATP 710
              + + L + F ++DLG+ ++FLG EIAR+  GI L QRKY L+LL  +     KP++ P
Sbjct: 1133 AELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIP 1192

Query: 711  FDPSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAA 770
             +P+ KL   TGT   D   YRR++G+L YL  TRPDI+++V  L+Q+ S P   H QA 
Sbjct: 1193 MEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQAL 1252

Query: 771  QRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSK 830
             +IL+YLK +  +GLF+ + +   L GF+DSDW  CPDTRR VTG+ + +G+SL+SW+SK
Sbjct: 1253 HKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSK 1312

Query: 831  KQSTVSRSSTEAEYRALAHLTCELQWLNYL 860
            KQ  VS SS EAEYRA++  T EL WL Y+
Sbjct: 1313 KQDVVSMSSAEAEYRAMSVATKELIWLGYI 1342


>At4g07810 putative polyprotein
          Length = 1366

 Score =  615 bits (1585), Expect = e-176
 Identities = 356/811 (43%), Positives = 466/811 (56%), Gaps = 83/811 (10%)

Query: 35   RLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDLLHADL 94
            RLGH S S +  +S     IP   +   C  CH +KQK L F  ++     PF L+H D 
Sbjct: 506  RLGHPSMSRVQALSSNL-HIPQKLSEFHCKICHLSKQKCLSFVSNNKIYEEPFPLIHID- 563

Query: 95   WGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHTTLKCLR 154
                                               +       F+  V+ QF  T+K +R
Sbjct: 564  ----------------------------------SDVTTIFPEFLKLVQTQFGCTVKSIR 589

Query: 155  SDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHSHVPITMW 214
            SDN  E +     L + GI H+ +C  TPQQN VVER HQH+LNVARSL F S++P+  W
Sbjct: 590  SDNAPE-LQFKDLLATFGIFHYHSCAYTPQQNYVVERNHQHLLNVARSLYFQSNIPLAYW 648

Query: 215  NFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPR 274
               V  A  +INR P+P L+ KSP+E+L+K+ P    L+VF CL YAST Q  R KF  R
Sbjct: 649  PECVSTAAFLINRTPTPNLEHKSPYEVLYKKLPDYNSLRVFCCLCYASTHQHERHKFTER 708

Query: 275  ARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPFTLATKQANIPTTSSHIDLG 334
            A   +F+G++ G KG  + DL SN + V+RNV+F+E  FPF       N+          
Sbjct: 709  ATSCVFIGYESGFKGYKILDLESNTVSVTRNVVFHETIFPFIDKHSTQNVS--------- 759

Query: 335  DPITDLSPHPISAPE-------------FQLTSTPPSQYVSAPAVQHA---IPVTDSISE 378
                D S  PIS  +               L   P  +  + PA  H     P++ +++ 
Sbjct: 760  --FFDDSVLPISEKQKENRFQIYDYFNVLNLEVCPVIEPTTVPAHTHTRSLAPLSTTVTN 817

Query: 379  PTV----------RKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLSSFLSYDNCS 428
                         RK TR    PSYL+ YHC+   K  S+   G +++ LSS LSYD  S
Sbjct: 818  DQFGNDMDNTLMPRKETRA---PSYLSQYHCSNVLKEPSSSLHG-TAHSLSSHLSYDKLS 873

Query: 429  PTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCK 488
              Y  FC  I +  EP TF +A   + W +AM  EL+AL   +T  + +L  GK  IGCK
Sbjct: 874  NEYRLFCFAIIAEKEPTTFKEAALLQKWLDAMNVELDALVSTSTREICSLHDGKRAIGCK 933

Query: 489  WVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHL 548
            WV+K+KY ++G+IERYKARLVA GYTQ EGVDY DTFSP+AKLT++R++L+LAAI  W +
Sbjct: 934  WVFKIKYKSDGTIERYKARLVANGYTQQEGVDYIDTFSPIAKLTSVRLILALAAIHNWSI 993

Query: 549  EQLDVNNAFLHGDLHEEVYMALPPGYPT-----INSSQVCKLNKSLYGLKQASRQWYSKL 603
             Q+DV NAFLHGD  EE+YM LP GY       +    VC+L KSLYGLKQASRQW+ K 
Sbjct: 994  SQMDVTNAFLHGDFEEEIYMQLPQGYTPRKGELLPKRPVCRLVKSLYGLKQASRQWFHKF 1053

Query: 604  STSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCI 663
            S  LI  G+ QSL D +LFV+V   +F ALLVYVDDI+L  N  S +  VK  L  +F +
Sbjct: 1054 SGVLIQNGFMQSLFDPTLFVRVREDTFLALLVYVDDIMLVSNKDSAVIEVKQILAKEFKL 1113

Query: 664  KDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGT 723
            KDLGQ RYFLG EIARSK GI ++QRKY LELLE+ G LG KP  TP + + KL    G 
Sbjct: 1114 KDLGQKRYFLGLEIARSKEGISISQRKYALELLEEFGFLGCKPVPTPMELNLKLSQEDGA 1173

Query: 724  PFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAK 783
               DAS YR+LIGRL+YLT TRPDI ++V  L+Q++S P  PH  AA+RIL+YLK+ P +
Sbjct: 1174 LLLDASHYRKLIGRLVYLTVTRPDICFAVNKLNQYMSAPREPHLMAARRILRYLKNDPGQ 1233

Query: 784  GLFFSSSSELKLHGFADSDWACCPDTRRSVT 814
            G+F+ +SS L    FAD+DW+ CP++  S++
Sbjct: 1234 GVFYPASSTLTFRAFADADWSNCPESSISIS 1264


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  580 bits (1496), Expect = e-166
 Identities = 340/919 (36%), Positives = 500/919 (53%), Gaps = 89/919 (9%)

Query: 32   WHMRLGHVSSSGL-SVISKQ-FPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDL 89
            WH RLGH S + L SVIS    P +        C  C   K  ++PF +S+I SS P + 
Sbjct: 446  WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 90   LHADLWGPYSTP--SFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFH 147
            +++D+W   S+P  S   ++Y++  VD ++R+TW+  LK K + +     F S VEN+F 
Sbjct: 506  IYSDVW---SSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQ 562

Query: 148  TTLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHS 207
            T +  L SDNG EF+ +  +L   GI H  +   TP+ NG+ ERKH+HI+ +  +L  H+
Sbjct: 563  TRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 622

Query: 208  HVPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAH 267
             VP T W +    AV++INR+P+PLL+ +SPF+ L  +PP+   LKVFGC  Y      +
Sbjct: 623  SVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYN 682

Query: 268  RTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPFT-----LATKQA 322
            R K   ++++  F+G+       +   + +  L+ SR+V F E  FPF+     ++T Q 
Sbjct: 683  RHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQE 742

Query: 323  ----NIPTTSSHIDLGD------------PITDLSPHPISAPEFQLT-----STPPSQYV 361
                + P   SH  L              P  D SP P S+P    T     S  PS  +
Sbjct: 743  QRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSI 802

Query: 362  SAPAVQHAIPVTDSISEPTVR--KSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLS 419
            S+P+       + +  +PT +  ++   +     L + + N PS +  N +S +   P+S
Sbjct: 803  SSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPIS 862

Query: 420  S----------------------------------FLSYDNCSPTYTH------------ 433
            S                                   +  +  +P  TH            
Sbjct: 863  SPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRK 922

Query: 434  ------FCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPI-G 486
                  +  ++++ +EP+T  QA K + WR+AM +E+NA   N+TW +V  PP  V I G
Sbjct: 923  PNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVG 982

Query: 487  CKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGW 546
            C+W++  K++++GS+ RYKARLVA+GY Q  G+DY +TFSPV K T+IR++L +A  + W
Sbjct: 983  CRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSW 1042

Query: 547  HLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQ-VCKLNKSLYGLKQASRQWYSKLST 605
             + QLDVNNAFL G L +EVYM+ PPG+   +    VC+L K++YGLKQA R WY +L T
Sbjct: 1043 PIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRT 1102

Query: 606  SLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKD 665
             L++ G+  S++D SLFV   G S   +LVYVDDI++ GN    +K     L  +F +K+
Sbjct: 1103 YLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1162

Query: 666  LGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPF 725
               L YFLG E  R   G+ L+QR+YTL+LL     L +KP ATP   S KL   +GT  
Sbjct: 1163 HEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKL 1222

Query: 726  TDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGL 785
             D + YR ++G L YL  TRPD+SY+V  LSQ++  P   H+ A +R+L+YL  +P  G+
Sbjct: 1223 PDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGI 1282

Query: 786  FFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYR 845
            F    + L LH ++D+DWA   D   S  GY V LG   ISW SKKQ  V RSSTEAEYR
Sbjct: 1283 FLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1342

Query: 846  ALAHLTCELQWLNYLFHDL 864
            ++A+ + ELQW+  L  +L
Sbjct: 1343 SVANTSSELQWICSLLTEL 1361


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  558 bits (1439), Expect = e-159
 Identities = 324/842 (38%), Positives = 466/842 (54%), Gaps = 23/842 (2%)

Query: 30   DVWHMRLGHVSSSGLSVISKQFPF-IPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFD 88
            +VWH RLGH +S  L  +       I   + +P C+ C   K  RLPF  S  +   P D
Sbjct: 454  EVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLD 513

Query: 89   LLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHT 148
             +H DLWGP    S  G KY+   VDDYSR++W   L  K E       F   VENQ +T
Sbjct: 514  RIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNT 573

Query: 149  TLKCLRSDNGSEFIA--MTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFH 206
             +K  +SD G EF++  + + L   GI H  +C  TPQQNG+ ERKH+H++ +  S+ FH
Sbjct: 574  KIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFH 633

Query: 207  SHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQA 266
            SH P   W  +   A +IINR+PS +LK  SP+E L  E P    L+VFG   Y      
Sbjct: 634  SHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPL 693

Query: 267  HRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPFTLATKQANIPT 326
             + KF+PR+ + +FLG+    KG   +   + ++++SRNVIF E+  PF     Q+ +P 
Sbjct: 694  AQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFK-EKYQSLVPQ 752

Query: 327  TSSHIDLGDPITDLSPHPISAPEFQLTSTPPSQYVSAPAVQHAIPVTDSISEPTVRKSTR 386
             S+ +        +S   + A   QL S P      A +      VT+ +++P    +  
Sbjct: 753  YSTPLLQAWQHNKISEISVPAAPVQLFSKPIDLNTYAGS-----QVTEQLTDPEPTSNNE 807

Query: 387  ISQRPSYLADYHCN-LPSKSCSNVSSGISSYPLSSFLSYDNCSPTYTHFCCTISSIN--E 443
             S       D   N +  +  +N    I+S+ +++        P  T +    S +N  E
Sbjct: 808  GS-------DEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPN-TRYALITSRMNTAE 859

Query: 444  PKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKVKYHANGSIER 503
            PKT A A K   W EA+  E+N +   +TWS+V        +  KWV+K K H +GSI++
Sbjct: 860  PKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDK 919

Query: 504  YKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLH 563
             KARLVA+G+ Q EGVDY +TFSPV +  TIR++L ++  KGW ++QLDV+NAFLHG+L 
Sbjct: 920  LKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQ 979

Query: 564  EEVYMALPPGY-PTINSSQVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLF 622
            E V+M  P G+      + VC+L K++YGLKQA R W+   S  L+ +G+  S +D SLF
Sbjct: 980  EPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLF 1039

Query: 623  VKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKS 682
            V         LL+YVDDI+L G+  S ++ +   L N+F +KDLG  RYFLG +I    +
Sbjct: 1040 VCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYAN 1099

Query: 683  GILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFTDASSYRRLIGRLLYLT 742
            G+ L+Q  Y  ++L+ AG     P  TP     +L       F + + +R L G+L YLT
Sbjct: 1100 GLFLHQTAYATDILQQAGMSDCNPMPTPL--PQQLDNLNSELFAEPTYFRSLAGKLQYLT 1157

Query: 743  NTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSD 802
             TRPDI ++V  + Q +  P    +   +RIL+Y+K +   GL    +S L L  ++DSD
Sbjct: 1158 ITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSD 1217

Query: 803  WACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQWLNYLFH 862
             A C +TRRS TG+C+LLGS+LISW +K+Q TVS SSTEAEYRAL +   E+ W+++L  
Sbjct: 1218 HAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLR 1277

Query: 863  DL 864
            DL
Sbjct: 1278 DL 1279


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  546 bits (1407), Expect = e-155
 Identities = 294/616 (47%), Positives = 398/616 (63%), Gaps = 34/616 (5%)

Query: 283 FKEGTKGSILYDLNSNELFVSRNVIFYENHFPFTLAT--KQANIPTTSSHIDLGDPITDL 340
           +  G KG  + DL S+ + ++RNV+F+E  FPF  +   K++     +S + L  P+  +
Sbjct: 335 YPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFV 394

Query: 341 SPHPI-----SAPEFQLTSTPPSQYVSAPAVQHAIPV--TDSISEPT----VRKSTRISQ 389
              P+     +      TS   S   S P +   +    TD++   T    + +  R ++
Sbjct: 395 ESMPLDDDLRADDNNASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAK 454

Query: 390 RPSYLADYHCN----------LPSKSCSNVSSGI------SSYPLSSFLSYDNCSPTYTH 433
            P+YL++YHCN            S S    SS I      + YP+S+ +SYD  +P +  
Sbjct: 455 APAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHS 514

Query: 434 FCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKV 493
           + C  +   EPK F QA KSE W  A   EL+AL +N TW V +L  GK  +GCKWV+ +
Sbjct: 515 YICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTI 574

Query: 494 KYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDV 553
           KY+ +GSIERYKARLVAQG+TQ EG+DY +TFSPVAK  ++++LL LAA  GW L Q+DV
Sbjct: 575 KYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDV 634

Query: 554 NNAFLHGDLHEEVYMALPPGY--PT---INSSQVCKLNKSLYGLKQASRQWYSKLSTSLI 608
           +NAFLHG+L EE+YM+LP GY  PT   + S  VC+L KSLYGLKQASRQWY +LS+  +
Sbjct: 635 SNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFL 694

Query: 609 SFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQ 668
              + QS AD ++FVKVS  S   +LVYVDD+++A N  S ++++K  L ++F IKDLG 
Sbjct: 695 GANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGP 754

Query: 669 LRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFTDA 728
            R+FLG EIARS  GI + QRKY   LLED G  G KP++ P DP+  L    GT   +A
Sbjct: 755 ARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNA 814

Query: 729 SSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFS 788
           +SYR L+GRLLYL  TRPDI+++V  LSQF+S P   H QAA ++L+YLK +P +GL +S
Sbjct: 815 TSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYS 874

Query: 789 SSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRALA 848
           +SSEL L+GF+D+DW  C D+RRSVTG+C+ LG+SLI+WKSKKQS VSRSSTE+EYR+LA
Sbjct: 875 ASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLA 934

Query: 849 HLTCELQWLNYLFHDL 864
             TCE+ WL  L  DL
Sbjct: 935 QATCEIIWLQQLLKDL 950


>At2g07010 putative retroelement pol polyprotein
          Length = 1413

 Score =  533 bits (1373), Expect = e-151
 Identities = 307/734 (41%), Positives = 416/734 (55%), Gaps = 63/734 (8%)

Query: 4    GGLYLIAAGPSLANKLSCNSVFTDCFDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPC 63
            G  YL  A  +  +K+      T    +WH RLGH S S LS +   F    C  ++  C
Sbjct: 489  GVYYLTDAATTTVHKVD----ITTDHALWHQRLGHPSFSVLSSLPL-FSGSSCSVSSRSC 543

Query: 64   DACHYAKQKRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVI 123
            D C  AKQ R  FP SS KS+  F L+H D+WGPY  PS  G  YFLT+VDD+SR  W  
Sbjct: 544  DVCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTY 603

Query: 124  FLKTKDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETP 183
             L  K E +  L +F++Y E QF  ++K +RSDNG+EF+ ++S+   +GI+H  +CV TP
Sbjct: 604  LLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLSSYFKEQGIVHQTSCVGTP 663

Query: 184  QQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLH 243
            QQNG VERKH+HILNV+R+L F + +PI  W   V  A ++INR PS +    SP+ELLH
Sbjct: 664  QQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLH 723

Query: 244  KEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVS 303
               P    L+VFG   YA  +   + KF  R+R  IF+G+  G KG  +YDL++NE  VS
Sbjct: 724  GCKPDYDQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVS 783

Query: 304  RNVIFYENHFPF------TLATKQANIPTT---------------SSHIDLGDP---ITD 339
            R+V+F EN FP+      T+ T     P T               S    L DP   +T+
Sbjct: 784  RDVVFRENVFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRGSDENYLSDPPVCVTN 843

Query: 340  LS------------PHPISAPEFQLTSTPPSQ------YVSAPAVQHAIPVTDS---ISE 378
            +S            P P+  P    TS  P+Q        ++P+   + P  D+   I  
Sbjct: 844  VSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTSPSTNVSPPQQDTTPIIEN 903

Query: 379  PTVRKSTRISQRPSYLADY------------HCNLPSKSCSNVS-SGISSYPLSSFLSYD 425
               R+  R  Q+P+ L DY            H   PS S S+ S  G   YPL+ ++S +
Sbjct: 904  TPPRQGKRQVQQPARLKDYILYNASCTPNTPHVLSPSTSQSSSSIQGNLQYPLTDYISDE 963

Query: 426  NCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPI 485
              S  +  F   I++ +EPK F +  K + W +AM  E++AL  N TW +V LP GKV I
Sbjct: 964  CFSAGHKVFLAAITANDEPKHFKEDVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAI 1023

Query: 486  GCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKG 545
            G +WVYK K++A+G++ERYKARLV QG  Q EG DY +TF+PV K+TT+R LL L A   
Sbjct: 1024 GSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQ 1083

Query: 546  WHLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCKLNKSLYGLKQASRQWYSKLST 605
            W + Q+DV+NAFLHGDL EEVYM LPPG+   +  +VC+L KSLYGLKQA R W+ KLS 
Sbjct: 1084 WEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSD 1143

Query: 606  SLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKD 665
            +L  FG+ Q   DYS F          +LVYVDD+++ GN    ++  K +L   F +KD
Sbjct: 1144 ALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKD 1203

Query: 666  LGQLRYFLGFEIAR 679
            LG+L+YFLG E++R
Sbjct: 1204 LGKLKYFLGIEVSR 1217



 Score =  111 bits (278), Expect = 2e-24
 Identities = 54/103 (52%), Positives = 72/103 (69%)

Query: 762  PMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLG 821
            P   H +AA RI++YLK SP +G+  S++ +L L  + DSD+  CP TRRS++ Y VLLG
Sbjct: 1222 PREAHLEAAMRIVRYLKGSPGQGILLSANKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLG 1281

Query: 822  SSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQWLNYLFHDL 864
             S ISWK+KKQ TVS SS EAEYRA++    E++WLN L  +L
Sbjct: 1282 GSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKEL 1324


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  528 bits (1361), Expect = e-150
 Identities = 314/889 (35%), Positives = 465/889 (51%), Gaps = 59/889 (6%)

Query: 30   DVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDL 89
            +VWH RLGH +   L  + K    +    ++  C+AC   K  RLPF  S   SS P + 
Sbjct: 456  EVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVASEFVSSRPLER 515

Query: 90   LHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHTT 149
            +H DLWGP    S  G +Y++  +D+YSRFTW   LK K +       F   VENQ+   
Sbjct: 516  IHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHK 575

Query: 150  LKCLRSDNGSEFIA--MTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHS 207
            +   + D G EF++    + L S GI    +C  TPQQNG+ ER+H+++  +  SL FHS
Sbjct: 576  IAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHS 635

Query: 208  HVPITMWNFTVQHAVHIINRIPSPLLKF-KSPFELLHKEPPSIIHLKVFGCLAYASTLQA 266
             VP  +W      +  + N +PS  L   KSP+E+LH  PP    L+VFG   Y      
Sbjct: 636  KVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPY 695

Query: 267  HRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPFTLATKQANIPT 326
             + KF+P++   +FLG+    KG       + ++++ R+V+F E  FP++    Q    +
Sbjct: 696  AKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTIS 755

Query: 327  TS----------SHIDLGDPITDLSPHPISAPEFQLTSTPPS-------QYVSAPAVQHA 369
             S          S   L       +   I  P   ++S+ P+       +  +AP V  A
Sbjct: 756  GSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATVSSSVPTGCAPNIAETATAPDVDVA 815

Query: 370  IPVTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSY------------- 416
                D +  P+   ST +  +P        +  + S + +SS ++               
Sbjct: 816  A-AHDMVVPPSPITSTSLPTQPEESTSDQNHYSTDSETAISSAMTPQSINVSLFEDSDFP 874

Query: 417  PLSSFLSYDNCSPTYTHFCCTI------------------SSINEPKTFAQANKSECWRE 458
            PL S +S    +P  +H   T                   S+  EPK+  +A K E W  
Sbjct: 875  PLQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEALKDEGWTN 934

Query: 459  AMTTELNALAKNNTWSVVTLPPGKVP--IGCKWVYKVKYHANGSIERYKARLVAQGYTQT 516
            AM  E+  + + +TW +V  PP  V   +GCKWV+K K +++GS++R KARLVA+GY Q 
Sbjct: 935  AMGEEMGTMHETDTWDLV--PPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQE 992

Query: 517  EGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPT 576
            EGVDY +T+SPV +  T+R +L +A I  W L+QLDV NAFLH +L E V+M  PPG+  
Sbjct: 993  EGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFED 1052

Query: 577  INSSQ-VCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLV 635
             +    VCKL K++Y LKQA R W+ K S+ L+ +G+  S +D SLFV + G     LL+
Sbjct: 1053 PSRPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLL 1112

Query: 636  YVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLEL 695
            YVDD++L GN    ++ +   L  +F +KD+G L YFLG +      G+ L+Q KYT +L
Sbjct: 1113 YVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQAHYHNDGLFLSQEKYTSDL 1172

Query: 696  LEDAGTLGSKPAATPFDPSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNL 755
            L +AG        TP       G     PF + + +RRL G+L YLT TRPDI ++V  +
Sbjct: 1173 LVNAGMSDCSSMPTPLQLDLLQG--NNKPFPEPTYFRRLAGKLQYLTLTRPDIQFAVNFV 1230

Query: 756  SQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTG 815
             Q +  P +  +   +RIL YLK +   G+  SS+++  L  ++DSDWA C DTRRS  G
Sbjct: 1231 CQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRCYSDSDWAGCKDTRRSTGG 1290

Query: 816  YCVLLGSSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQWLNYLFHDL 864
            +C  LG ++ISW +K+  TVS+SSTEAEYR L+    E+ W+ +L  ++
Sbjct: 1291 FCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWIGFLLQEI 1339


>At1g36620 hypothetical protein
          Length = 1152

 Score =  513 bits (1321), Expect = e-145
 Identities = 277/648 (42%), Positives = 388/648 (59%), Gaps = 33/648 (5%)

Query: 31   VWHMRLGHVSSSGLS-VISKQFPFIPCIKNAPP-CDACHYAKQKRLPFPHSSIKSSAPFD 88
            +WHMRLGH SS  LS V+     F  C  +    CD C  AKQ R  F  S  K+   F 
Sbjct: 513  LWHMRLGHPSSKVLSSVLPSLEDFDSCSSDLKTICDVCVRAKQTRASFSESFNKAEECFS 572

Query: 89   LLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHT 148
             +H D+WGPY   S  G  YFLT+VDD+SR  W+  +  K E    L+ FI+    QF+ 
Sbjct: 573  FIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMASRQFNK 632

Query: 149  TLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHSH 208
             +K +RS+NG+EF+++ S+   +GI+H  +CV T QQNG VERKH+HILNVARSL F + 
Sbjct: 633  QVKTVRSNNGTEFMSLKSYFAERGIVHQISCVYTHQQNGRVERKHRHILNVARSLLFQAE 692

Query: 209  VPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHR 268
            +PI+ W  +V  A ++INR P+P+L  K+P+++L+ +PPS   L+VFG L +A       
Sbjct: 693  LPISFWEESVLTAAYLINRTPTPILDGKTPYKILYSQPPSYASLRVFGSLCFARKHTGRL 752

Query: 269  TKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPF-------TLATKQ 321
             KF  R RK IF+G+  G KG  +YD+ S   FVSR+V+F E+ FPF       T ++  
Sbjct: 753  DKFQERGRKCIFVGYPHGQKGWRIYDIESQIFFVSRDVVFQEDIFPFADKKNKDTFSSPA 812

Query: 322  ANIPTTSSHID--------LGD-PITDLSPHPISAPEFQLTSTPPSQYVSAPAVQHAIPV 372
            A IP+     D        +GD P T+  P  I      +  +PPS  +       A P 
Sbjct: 813  AVIPSPILPYDDEFLDIYQIGDVPATNPLPAIID-----VNDSPPSSPIITATPAAASP- 866

Query: 373  TDSISEPTVRKSTRISQRPSYLADYHC-NLPSKSCSNVSSGISS--YPLSSFLSYDNCSP 429
                  P +R+  R  Q    L DY   +   +S   +S  I +  YP+++++S +  SP
Sbjct: 867  ------PPLRRGLRQRQENVRLKDYQTYSAQCESTQTLSDNIGTCIYPMANYVSGEIFSP 920

Query: 430  TYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKW 489
            +  HF   IS ++ P+T+ QA + + WR A+  E++AL    TW +  LP G   IG KW
Sbjct: 921  SNQHFLAAISMVDPPQTYNQAIREKEWRNAVFFEVDALEDQGTWDITKLPQGVKAIGSKW 980

Query: 490  VYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLE 549
            V+++KY++NG++ERYKARLVA G  Q EG+D+  TF+PV K+ T+R+LL +AA K W L 
Sbjct: 981  VFRIKYNSNGTVERYKARLVALGNHQKEGIDFTKTFAPVVKMQTVRLLLDVAAAKDWELH 1040

Query: 550  QLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCKLNKSLYGLKQASRQWYSKLSTSLIS 609
            Q+DV+NAFLHGDL E++YM  PPG+ T + S VCKL KS+YGLKQA R W+ KLSTSL+ 
Sbjct: 1041 QMDVHNAFLHGDLKEDIYMKPPPGFKTTDPSLVCKLKKSIYGLKQAPRCWFEKLSTSLLK 1100

Query: 610  FGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFL 657
            FG+TQS  DYSLF  + G+    ++VYVDD+V+ G  + E  + K  L
Sbjct: 1101 FGFTQSKKDYSLFTSIRGSKVLHVIVYVDDVVICGKAVRENNTSKLAL 1148


>At4g23160 putative protein
          Length = 1240

 Score =  509 bits (1310), Expect = e-144
 Identities = 248/498 (49%), Positives = 349/498 (69%), Gaps = 13/498 (2%)

Query: 372 VTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLSSFLSYDNCSPTY 431
           + + + EP+V  S R +++P+YL DY+C+       +V+S ++ + +S FLSY+  SP Y
Sbjct: 22  IQNDVPEPSVHTSHRRTRKPAYLQDYYCH-------SVAS-LTIHDISQFLSYEKVSPLY 73

Query: 432 THFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVY 491
             F   I+   EP T+ +A +   W  AM  E+ A+   +TW + TLPP K PIGCKWVY
Sbjct: 74  HSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVY 133

Query: 492 KVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQL 551
           K+KY+++G+IERYKARLVA+GYTQ EG+D+ +TFSPV KLT+++++L+++AI  + L QL
Sbjct: 134 KIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQL 193

Query: 552 DVNNAFLHGDLHEEVYMALPPGYP-----TINSSQVCKLNKSLYGLKQASRQWYSKLSTS 606
           D++NAFL+GDL EE+YM LPPGY      ++  + VC L KS+YGLKQASRQW+ K S +
Sbjct: 194 DISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVT 253

Query: 607 LISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDL 666
           LI FG+ QS +D++ F+K++   F  +LVYVDDI++  N  + +  +K+ L + F ++DL
Sbjct: 254 LIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDL 313

Query: 667 GQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFT 726
           G L+YFLG EIARS +GI + QRKY L+LL++ G LG KP++ P DPS    A +G  F 
Sbjct: 314 GPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFV 373

Query: 727 DASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLF 786
           DA +YRRLIGRL+YL  TR DIS++V  LSQF   P + H QA  +IL Y+K +  +GLF
Sbjct: 374 DAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLF 433

Query: 787 FSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRA 846
           +SS +E++L  F+D+ +  C DTRRS  GYC+ LG+SLISWKSKKQ  VS+SS EAEYRA
Sbjct: 434 YSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRA 493

Query: 847 LAHLTCELQWLNYLFHDL 864
           L+  T E+ WL   F +L
Sbjct: 494 LSFATDEMMWLAQFFREL 511


>At2g06840 putative retroelement pol polyprotein
          Length = 1102

 Score =  506 bits (1303), Expect = e-143
 Identities = 293/743 (39%), Positives = 410/743 (54%), Gaps = 75/743 (10%)

Query: 126  KTKDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQ 185
            + K      +++F +  + QF   ++ +RSDNG+EF+  TS+    GI+H  +CV+TPQQ
Sbjct: 346  RAKQTLPSLIRNFCAMADRQFRKPVRSIRSDNGTEFMCHTSYFQEHGILHETSCVDTPQQ 405

Query: 186  NGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKE 245
            N  VERKH+HILNVAR+  F  + P                  PSP+LK K+P+E+L  +
Sbjct: 406  NARVERKHRHILNVARTCLFQGNFPT-----------------PSPVLKGKTPYEVLFGK 448

Query: 246  PPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRN 305
             PS   L+ FGCL YA      + KF  R+RK IF+G+   T        N+++     +
Sbjct: 449  QPSYDMLRTFGCLCYAHIRPRDKDKFASRSRKCIFIGYPHETATP-----NTHDSIDPTS 503

Query: 306  VIFYENHFPFTLATKQANIPTTSSHIDLGDPITDLSPHPI----SAPEFQLTSTPPSQYV 361
                EN+ P    T QA  P + S I         SPH +    S     L     S   
Sbjct: 504  TSSDENNTPPEPVTPQAEQPHSPSSIS--------SPHIVHNKGSVHSRHLNEDHDSSSP 555

Query: 362  SAPAVQHAIPVTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGISSYPLSSF 421
              P +              + K  R    P YL DY  +    S    S G+S   +S  
Sbjct: 556  GLPEL--------------LGKGHRPKHPPVYLKDYVAHKVHSSPHTSSPGLSDSNVSPT 601

Query: 422  LSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPG 481
            +S ++ +     F   I   NE   F      + W +AM  E+ AL  N+TW V  LP G
Sbjct: 602  VSANHIA-----FMAAILDSNEQNHFKDDVLIKEWCDAMQKEIEALEANHTWDVTDLPHG 656

Query: 482  KVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLA 541
            K  I  KWVYK+K++++G++ER+KARLV  G  Q EG+D+ +TF+PVAK+TT+R+LL++A
Sbjct: 657  KKAISSKWVYKLKFNSDGTLERHKARLVVMGNHQKEGIDFKETFAPVAKMTTVRLLLAVA 716

Query: 542  AIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCKLNKSLYGLKQASRQWYS 601
            A K W + Q+DV+NAFLHGDL +E                      SLYGLKQA R W++
Sbjct: 717  AAKDWDVFQMDVHNAFLHGDLEQE----------------------SLYGLKQAPRCWFA 754

Query: 602  KLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKF 661
            KLST+L   G+TQS  DYSLF      +    LVYVDD ++ GN +  I   K  L   F
Sbjct: 755  KLSTALRKLGFTQSYEDYSLFSLNRDGTVIHFLVYVDDFIIVGNNLKAIDHFKEHLHKCF 814

Query: 662  CIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATT 721
             +KDLG+L+YFLG E++R   G  L+Q+KY L+++ +AG LG KP+A P +   KLG+ +
Sbjct: 815  HMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLLGYKPSAVPMELHHKLGSIS 874

Query: 722  GTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSP 781
               F + + YRRL+ R +YLT TRPD+SY+V  LSQF+  P+  H+ A  R+++YLK SP
Sbjct: 875  SPVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLEAHWHATLRLVRYLKGSP 934

Query: 782  AKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTE 841
             +G+   S   L L  + DSD+  CP TRRS++ Y + LG + ISWK+KKQ TVS SS E
Sbjct: 935  DQGILLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVLYLGDTPISWKTKKQDTVSSSSAE 994

Query: 842  AEYRALAHLTCELQWLNYLFHDL 864
            AEYRA+A+   E++WL  L   L
Sbjct: 995  AEYRAMAYTLKEIKWLKALMTTL 1017



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/56 (35%), Positives = 27/56 (47%), Gaps = 2/56 (3%)

Query: 16  ANKLSCNSVFTDCFDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQ 71
           A+K S +S  T    +WH RLGH S+S L  + +       +     CD C  AKQ
Sbjct: 296 AHKTSSDS--TSSGALWHRRLGHPSTSFLLSLPECHQSSKDLGKIDSCDTCSRAKQ 349


>At4g27210 putative protein
          Length = 1318

 Score =  505 bits (1300), Expect = e-143
 Identities = 295/829 (35%), Positives = 435/829 (51%), Gaps = 43/829 (5%)

Query: 72   KRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDET 131
            +RL  PH  I    P + +H DLWGP +  S  G +Y+   +D YSRF+W+  LK K + 
Sbjct: 314  RRLGHPHPQILQ--PLERVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDF 371

Query: 132  QKHLKHFISYVENQFHTTLKCLRSDNGSEFIA--MTSFLLSKGIIHHKTCVETPQQNGVV 189
                  F   VENQ    +   + D G EF++      L S GI    +C  TPQQNG+ 
Sbjct: 372  YNIFLAFHKLVENQLSQKISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSCPHTPQQNGLA 431

Query: 190  ERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFK-SPFELLHKEPPS 248
            ERKH+H++ +  S+ F SHVP   W      A  +IN +P+  LK   SP+E L+ + P 
Sbjct: 432  ERKHRHLVELGLSMLFQSHVPHKFWVEAFFTANFLINLLPTSALKESISPYEKLYDKKPD 491

Query: 249  IIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIF 308
               L+ FG   + +       KFNP + K +FLG+ E  KG       +  L++SR+VIF
Sbjct: 492  YTSLRSFGSACFPTLRDYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIF 551

Query: 309  YENHFPFTLATK----QANIPTTSSHIDLGD---PITDLSPHPISAPEFQLTSTPPSQYV 361
             E+ +PF+   K    Q   P  ++ +   D   P T  SP   S P F     PP    
Sbjct: 552  DESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRS-PLFTSADFPPLPQR 610

Query: 362  SAPAVQHAIPVTDSISEPTVRKSTRISQRPSYLADYHCNLPSKSCSNVSSGI-------- 413
              P +   +P++ S+S  +   +    Q P + ++   +  S S  + S           
Sbjct: 611  KTPLLPTLVPIS-SVSHAS---NITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEE 666

Query: 414  ----SSYPLSSFLSYDNCSPTYTHFCCTISSIN-------------EPKTFAQANKSECW 456
                +S  +    +  N  P  T     IS  N             EPKT   A K   W
Sbjct: 667  TIQQASVNVHQTHASTNVHPMVTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGW 726

Query: 457  REAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQT 516
              AMT E+   ++  TWS+V        +G KWV++ K HA+G++ + KAR+VA+G+ Q 
Sbjct: 727  TGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQE 786

Query: 517  EGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGY-P 575
            EG+DY +T+SPV +  T+R++L LA    W ++Q+DV NAFLHGDL E VYM  P G+  
Sbjct: 787  EGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGFVD 846

Query: 576  TINSSQVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLV 635
                  VC L+KS+YGLKQ+ R W+ K ST L+ FG+  S +D SLF+     +   LL+
Sbjct: 847  PSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLL 906

Query: 636  YVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLEL 695
            YVDD+V+ GN    + S+   L+ +F + D+GQL YFLG ++ R ++G+ ++Q+KY  +L
Sbjct: 907  YVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQVQRQQNGLFMSQQKYAEDL 966

Query: 696  LEDAGTLGSKPAATPFDPSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNL 755
            L  A      P  TP              F+D + +R + G+L YLT TRPDI ++V  +
Sbjct: 967  LIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFV 1026

Query: 756  SQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTG 815
             Q + +P +  +   +RIL+Y+K +   G+ +S  S   L  ++DSDW  C  TRRSV G
Sbjct: 1027 CQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNCKQTRRSVGG 1086

Query: 816  YCVLLGSSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQWLNYLFHDL 864
             C  +G++L+SW SKK  TVSRSSTEAEY++L+    E+ WL+ L  +L
Sbjct: 1087 LCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLREL 1135


>At4g22040 LTR retrotransposon like protein
          Length = 1109

 Score =  483 bits (1242), Expect = e-136
 Identities = 230/451 (50%), Positives = 331/451 (72%), Gaps = 1/451 (0%)

Query: 414  SSYPLSSFLSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTW 473
            + +P S  +S +  + ++  F   +++  EP T+ +A   + WREAM+ E+ +L  N T+
Sbjct: 571  TEFPYSK-MSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTF 629

Query: 474  SVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTT 533
            S+V LPPGK  +G KWVYK+KY ++G+IERYKARLV  G  Q EGVDY +TF+PVAK++T
Sbjct: 630  SIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMST 689

Query: 534  IRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCKLNKSLYGLK 593
            +R+ L +AA + WH+ Q+DV+NAFLHGDL EEVYM LP G+   + S+VC+L+KSLYGLK
Sbjct: 690  VRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLK 749

Query: 594  QASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSV 653
            QA R W+SKLS++L  +G+TQSL+DYSLF   +   F  +LVYVDD++++G+C   +   
Sbjct: 750  QAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQF 809

Query: 654  KTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDP 713
            K++L++ F +KDLG L+YFLG E++R+  G  L+QRKY L+++ + G LG++P+A P + 
Sbjct: 810  KSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQ 869

Query: 714  STKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRI 773
            + KL  +T    +D+S YRRL+GRL+YL  TRP++SYSV  L+QF+  P   H+ AA R+
Sbjct: 870  NHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRV 929

Query: 774  LKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQS 833
            ++YLKS+P +G+  SS+S L+++G+ DSD+A CP TRRS+TGY V LG + ISWK+KKQ 
Sbjct: 930  VRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQP 989

Query: 834  TVSRSSTEAEYRALAHLTCELQWLNYLFHDL 864
            T+SRSS EAEYRA+A LT EL WL  + +DL
Sbjct: 990  TISRSSAEAEYRAMAFLTQELMWLKRVLYDL 1020



 Score =  290 bits (743), Expect = 2e-78
 Identities = 145/302 (48%), Positives = 191/302 (63%), Gaps = 3/302 (0%)

Query: 29  FDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFD 88
           FD+WH RLGH S   ++++ ++            CD C  AKQ R  FP    +S   F 
Sbjct: 289 FDLWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSMDSFQ 348

Query: 89  LLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHT 148
           L+H D+WGPY TPS+ G +YFLT+VDDYSR  WV  +  K ETQKHLK F++ VE QF T
Sbjct: 349 LIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQFDT 408

Query: 149 TLKCLRSDNGSEFIAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHSH 208
            +K +RSDNG+EF+ M  + L KGI H  +CV TP QNG VERKH+HILN+AR+L F S+
Sbjct: 409 EIKTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSY 468

Query: 209 VPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHR 268
           +PI  W   +  A ++INR PS LL+ KSP+E+L+K  P   HL+VFG L YA       
Sbjct: 469 LPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKG 528

Query: 269 TKFNPRARKTIFLGFKEGTKGSILYDLNSNELFVSRNVIFYENHFPFTLATKQANIPTTS 328
            KF  R+R+ +F+G+  G KG  L+DL   + FVSR+VIF E  FP+   +K +    TS
Sbjct: 529 DKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPY---SKMSCNRFTS 585

Query: 329 SH 330
           SH
Sbjct: 586 SH 587


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,771,245
Number of Sequences: 26719
Number of extensions: 858394
Number of successful extensions: 2839
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 239
length of query: 864
length of database: 11,318,596
effective HSP length: 108
effective length of query: 756
effective length of database: 8,432,944
effective search space: 6375305664
effective search space used: 6375305664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)