BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136973.1 - phase: 0 /pseudo
(381 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47910 reverse transcriptase, putative 188 5e-48
At2g45230 putative non-LTR retroelement reverse transcriptase 186 2e-47
At2g17910 putative non-LTR retroelement reverse transcriptase 173 2e-43
At3g45550 putative protein 171 8e-43
At3g31420 hypothetical protein 171 8e-43
At2g31520 putative non-LTR retroelement reverse transcriptase 168 5e-42
At2g25550 putative non-LTR retroelement reverse transcriptase 168 5e-42
At1g24640 hypothetical protein 166 3e-41
At2g05200 putative non-LTR retroelement reverse transcriptase 165 4e-41
At2g17610 putative non-LTR retroelement reverse transcriptase 164 1e-40
At4g10830 putative protein 161 6e-40
At2g16680 putative non-LTR retroelement reverse transcriptase 160 1e-39
At2g11240 pseudogene 154 8e-38
At2g41580 putative non-LTR retroelement reverse transcriptase 154 1e-37
At4g09710 RNA-directed DNA polymerase -like protein 148 4e-36
At2g01840 putative non-LTR retroelement reverse transcriptase 143 1e-34
At2g15510 putative non-LTR retroelement reverse transcriptase 139 3e-33
At4g29090 putative protein 137 7e-33
At4g04000 putative reverse transcriptase 127 1e-29
orf154 -mitochondrial genome- 114 7e-26
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 188 bits (477), Expect = 5e-48
Identities = 89/192 (46%), Positives = 131/192 (67%), Gaps = 2/192 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP +G SK FSF++DR+ +I+ WS+K LSK G+EVMIK V +P YVMS FR
Sbjct: 534 YLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFR 593
Query: 62 LSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
L + ++ + FWW G S RG++W++W+KL K+DGG+GF++ FN A+L K
Sbjct: 594 LPKAITSKLTSAVAKFWWSSNGDS-RGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAK 652
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L T PDSL +K+FK RY+ SN LD+ ++PS+ WRS++SA+ +V +G ++G+
Sbjct: 653 QLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGS 712
Query: 181 GFDIPIISEPWI 192
G I + ++PWI
Sbjct: 713 GASISVWNDPWI 724
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 186 bits (472), Expect = 2e-47
Identities = 90/194 (46%), Positives = 132/194 (67%), Gaps = 2/194 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP SK AT S++KDR+ +K+ W S LS G+E+++K V A+P+Y MS F+
Sbjct: 750 YLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFK 809
Query: 62 LSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
+ T+ +IE +M FWW + RGL+W +W LS K GG+GFK+ AFN+A+LGK
Sbjct: 810 IPKTICQQIESVMAEFWWKNK-KEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGK 868
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W++ T+ DSL++K+FK+RY+ S+ L+A LG PSF W+SI A+V+++QG R IG
Sbjct: 869 QLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGN 928
Query: 181 GFDIPIISEPWIGS 194
G I + ++PWIG+
Sbjct: 929 GETINVWTDPWIGA 942
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 173 bits (438), Expect = 2e-43
Identities = 82/202 (40%), Positives = 129/202 (63%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP + SK+ F FIK+++ +++ W +K LS+ G+EV++K + A+P YVMS F
Sbjct: 727 KYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCF 786
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L L ++ +M FWW + R ++WLSW++L++ K+ GG GFKD FN A+L
Sbjct: 787 KLPKNLCQKLTTVMMDFWW-NSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLA 845
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ + SL S++F++RY+ NS+FL A G PS+ WRSIL + ++ QG R IG
Sbjct: 846 KQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIG 905
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + ++ W+ GS+ P+
Sbjct: 906 NGQKTFVWTDKWLHDGSNRRPL 927
>At3g45550 putative protein
Length = 851
Score = 171 bits (432), Expect = 8e-43
Identities = 83/205 (40%), Positives = 132/205 (63%), Gaps = 2/205 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR KK F++I DRV ++ +SWS+K LS AG+E+++K V A+P Y MS F
Sbjct: 370 KYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCF 429
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ EIE ++ +FWW S+ RG+ W++W++L K +GG+GF+D FN A+L
Sbjct: 430 KLPQGIVSEIESLLMNFWW-EKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLA 488
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ P+SL +++ KARY+ +++ +DAK S+ W S+LS ++R+G R+ IG
Sbjct: 489 KQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIG 548
Query: 180 AGFDIPIISEPWIGSGSSIPPVGDD 204
G I + + + S P + D+
Sbjct: 549 DGKTIRLGIDNVVDSHPPRPLLTDE 573
>At3g31420 hypothetical protein
Length = 1491
Score = 171 bits (432), Expect = 8e-43
Identities = 74/192 (38%), Positives = 126/192 (65%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP + KK F++I ++V K WS K LS+ G+EV++K V A+P Y M+IF
Sbjct: 907 KYLGLPEQFNKKKKELFNYIIEKVKDKTQGWSKKFLSQGGKEVLLKAVALAMPVYSMNIF 966
Query: 61 RLSNTLLDEIEMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
+L+ + +EI+ + + +W G+ +G++W +W+++S+ K +GG+GFK+ FN+A+LGK
Sbjct: 967 KLTKEVCEEIDSLLARFWWSSGNETKGMHWFTWKRMSIPKKEGGLGFKELENFNLALLGK 1026
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W L P+ L++++ + RY+P +N ++A G SFVW+SIL + ++++G R +G
Sbjct: 1027 QTWHLLQHPNCLMARVLRGRYFPETNVMNAVQGRRASFVWKSILHGRNLLKKGLRCCVGD 1086
Query: 181 GFDIPIISEPWI 192
G I +PW+
Sbjct: 1087 GSLINAWLDPWL 1098
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 168 bits (425), Expect = 5e-42
Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR KK F +I DRV ++ S+WS++ LS AG+E+M+K V A+P Y MS F
Sbjct: 905 KYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCF 964
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ EIE ++ +FWW S+ RG+ W++W++L K +GG+GF+D FN A+L
Sbjct: 965 KLPKGIVSEIESLLMNFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLA 1023
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W+L P+SL +++ KARY+ + + LDAK+ S+ W S+L ++++G R IG
Sbjct: 1024 KQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIG 1083
Query: 180 AGFDIPI 186
G +I I
Sbjct: 1084 DGQNIRI 1090
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 168 bits (425), Expect = 5e-42
Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR KK F +I DRV ++ S+WS++ LS AG+E+M+K V A+P Y MS F
Sbjct: 1131 KYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCF 1190
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ EIE ++ +FWW S+ RG+ W++W++L K +GG+GF+D FN A+L
Sbjct: 1191 KLPKGIVSEIESLLMNFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLA 1249
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W+L P+SL +++ KARY+ + + LDAK+ S+ W S+L ++++G R IG
Sbjct: 1250 KQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIG 1309
Query: 180 AGFDIPI 186
G +I I
Sbjct: 1310 DGQNIRI 1316
>At1g24640 hypothetical protein
Length = 1270
Score = 166 bits (419), Expect = 3e-41
Identities = 80/192 (41%), Positives = 123/192 (63%), Gaps = 2/192 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP SK ++KDR+ +K+ W ++CLS+ G+EV++K V A+P + MS F+
Sbjct: 713 YLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFK 772
Query: 62 LSNTLLDEIEM-MNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
L T + +E M SFWW S R ++W SWE+L + K+ GG+GF+D +FN A+L K
Sbjct: 773 LPITTCENLESAMASFWWDSCDHS-RKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAK 831
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L PD L+S++ K+RY+ ++FLDA L PSF WRSIL + ++ +G + ++G
Sbjct: 832 QAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGD 891
Query: 181 GFDIPIISEPWI 192
G + + +PWI
Sbjct: 892 GASLFVWIDPWI 903
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 165 bits (417), Expect = 4e-41
Identities = 80/203 (39%), Positives = 127/203 (62%), Gaps = 2/203 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR K+ F I D++ QK SW+S+ LS+AG++VM+K VL ++P Y MS F
Sbjct: 644 KYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCF 703
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L + L +I+ ++ FWW R +W++W KL+ KN GG+GF+D N ++L
Sbjct: 704 KLPSALCRKIQSLLTRFWWDTKPDV-RKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLA 762
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
K GW+L P+SL+S+I +Y +S+F++ KL PS WRSI++ + ++++G W I
Sbjct: 763 KLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLIT 822
Query: 180 AGFDIPIISEPWIGSGSSIPPVG 202
G + I ++PW+ + P+G
Sbjct: 823 NGEKVSIWNDPWLSISKPLVPIG 845
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 164 bits (414), Expect = 1e-40
Identities = 80/203 (39%), Positives = 124/203 (60%), Gaps = 2/203 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
+YLGLP VGR+K FSFI + QK+ +W +K LS AG+EV+IK ++ AIP+Y MS F
Sbjct: 204 RYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCF 263
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
L L+ +I M FWW + ++ + W++W KL+ K GG+ +D FN+A+L
Sbjct: 264 LLPMRLIHQITSAMRWFWWSNTKVKHK-IPWVAWSKLNDPKKMGGLAIRDLKDFNIALLA 322
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ +P SL++++FKA+Y+P LDAK S+ W+SIL ++ +G ++ G
Sbjct: 323 KQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAG 382
Query: 180 AGFDIPIISEPWIGSGSSIPPVG 202
G +I + + W+ PPVG
Sbjct: 383 NGNNIQLWKDNWLPLNPPRPPVG 405
>At4g10830 putative protein
Length = 1294
Score = 161 bits (407), Expect = 6e-40
Identities = 76/182 (41%), Positives = 120/182 (65%), Gaps = 2/182 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR K+ F++I +RV ++ SSWS+K LS AG+E+M+K V ++P Y MS F
Sbjct: 1111 KYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCF 1170
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ EIE ++ +FWW + R + W++W++L K +GG+GF+D FN A+L
Sbjct: 1171 KLPLNIVSEIEALLMNFWW-EKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLA 1229
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ P+SL ++I KARY+ + LDAK S+ W S+L+ V+++G+R+ +G
Sbjct: 1230 KQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVG 1289
Query: 180 AG 181
G
Sbjct: 1290 DG 1291
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 160 bits (405), Expect = 1e-39
Identities = 79/202 (39%), Positives = 126/202 (62%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP + SK+ F +IK+++ +S W K LS+ G+E+++K + A+P Y+M+ F
Sbjct: 701 KYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCF 760
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
RL L ++ +M FWW SN+ ++W+ +KL++ K+ GG GFKD FN A+L
Sbjct: 761 RLPKGLCTKLTSVMMDFWWNSMEFSNK-IHWIGGKKLTLPKSLGGFGFKDLQCFNQALLA 819
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W+L + S+VS+IFK+RY+ N++FL+A+ G PS+ WRSIL + ++ G + IG
Sbjct: 820 KQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIG 879
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + + W+ G S P+
Sbjct: 880 NGEQTNVWIDKWLFDGHSRRPM 901
>At2g11240 pseudogene
Length = 1044
Score = 154 bits (389), Expect = 8e-38
Identities = 74/202 (36%), Positives = 118/202 (57%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP M GR K+ F+ I DR+ Q+ SWSS+ LS AG+ M+K VL ++P+Y MS F
Sbjct: 575 KYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCF 634
Query: 61 RLSNTLLDEIEMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
+L +L I+ + +W + + + W++W K++ +K +GG+GFKD FN A+L K
Sbjct: 635 KLLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAK 694
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
W++ P ++ +I +Y S+FLD + S WR I + K +++ IG+
Sbjct: 695 LSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGS 754
Query: 181 GFDIPIISEPWIGSGSSIPPVG 202
G D + +EPW+ +S P+G
Sbjct: 755 GLDTLVWNEPWLSLSTSSTPMG 776
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 154 bits (388), Expect = 1e-37
Identities = 78/193 (40%), Positives = 118/193 (60%), Gaps = 2/193 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP SK+ F FIK+++ ++S W +K LS+ G+++++K + A P Y M+ F
Sbjct: 478 KYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCF 537
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
RLS TL ++ +M FWW + + ++W+ +KL + K GG GFKD FN A+L
Sbjct: 538 RLSKTLCTKLTSVMMDFWW-NSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLA 596
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ +L T DSL+S+I K+RYY NS+FL A G PS+ W+SIL + ++ G + IG
Sbjct: 597 KQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVSGLKKIIG 656
Query: 180 AGFDIPIISEPWI 192
G + + + WI
Sbjct: 657 NGENTYVWMDNWI 669
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 148 bits (374), Expect = 4e-36
Identities = 77/206 (37%), Positives = 122/206 (58%), Gaps = 14/206 (6%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR K+ FS I DR+ Q+ SWS + LS AG+++++K VL ++PSY M F
Sbjct: 690 KYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCF 749
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L +L +I+ ++ FWW R + W+SW+KL++ N+GG+GF++ A
Sbjct: 750 KLPASLCKQIQSVLTRFWW-DSKPDKRKMAWVSWDKLTLPINEGGLGFREIEA------- 801
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFV---WRSILSAKVVVRQGARW 176
K W++ +P SL+S++ +Y S+F+D +PSF WR IL+ + ++R+G W
Sbjct: 802 KLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSA--SPSFASHGWRGILAGRDLLRKGLGW 859
Query: 177 KIGAGFDIPIISEPWIGSGSSIPPVG 202
IG G I + +E W+ S P+G
Sbjct: 860 SIGQGDSINVWTEAWLSPSSPQTPIG 885
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 143 bits (361), Expect = 1e-34
Identities = 72/201 (35%), Positives = 114/201 (55%), Gaps = 23/201 (11%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP +GR K F +I +V ++ W+ LS AG+E++IK + A+P Y M+ F
Sbjct: 1111 KYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCF 1170
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
L + +EI ++ +FWWG +N+G +GFKD FN A+L
Sbjct: 1171 LLPTLICNEINSLITAFWWGK-------------------ENEGDLGFKDLHQFNRALLA 1211
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ T P SL+++++K YYPN+ +L A G + S+ W SI K++++QG R ++G
Sbjct: 1212 KQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLG 1271
Query: 180 AGFDIPIISEPWIGSGSSIPP 200
G I +PW+ ++PP
Sbjct: 1272 DGQTTKIWEDPWL---PTLPP 1289
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 139 bits (349), Expect = 3e-33
Identities = 65/175 (37%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 19 FIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFRLSNTLLDEI-EMMNSFW 77
+IKD++ ++S W ++ LS G+E+++K V A+ Y MS F+L+ T + M+ FW
Sbjct: 543 YIKDKLKSRLSGWFARTLSLGGKEILLKAVAMAMQVYAMSCFKLTKTTCKNLTSAMSDFW 602
Query: 78 WGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGKQGWQLQTKPDSLVSKIF 137
W + R +W+SWEKL + K GG+GF+D +FN A+L KQ W++ P L ++ F
Sbjct: 603 W-NALEHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFARFF 661
Query: 138 KARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGAGFDIPIISEPWI 192
K+RY+ + FL+A LG PS+ SIL + ++ +G R ++G G + + +PWI
Sbjct: 662 KSRYFDDEEFLEADLGVRPSYACCSILFGRELLAKGLRKEVGNGKSLNVWMDPWI 716
>At4g29090 putative protein
Length = 575
Score = 137 bits (346), Expect = 7e-33
Identities = 64/145 (44%), Positives = 103/145 (70%), Gaps = 2/145 (1%)
Query: 51 AIPSYVMSIFRLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKD 109
A+P+Y M+ F L T+ +I ++ FWW + + +G++W +W+ LS +K +GG+GFKD
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEA-KGMHWKAWDHLSCYKAEGGIGFKD 60
Query: 110 FVAFNVAMLGKQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVV 169
AFN+A+LGKQ W++ ++P+SL++K+FK+RY+ S+ L+A LG PSFVW+SI +++ +
Sbjct: 61 IEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 170 VRQGARWKIGAGFDIPIISEPWIGS 194
+RQGAR +G G DI I W+ S
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDS 145
>At4g04000 putative reverse transcriptase
Length = 1077
Score = 127 bits (319), Expect = 1e-29
Identities = 63/160 (39%), Positives = 93/160 (57%), Gaps = 2/160 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP + GR KK F+ I DR+ Q+ SWSS+ LS AG+ M+K VL +P+Y MS F
Sbjct: 684 KYLGLPELFGRKKKDLFTAIVDRIKQRALSWSSRFLSSAGKLTMLKSVLSTMPTYTMSCF 743
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L +L I+ + FWW R ++W+SW+K+++ GG+GF+D FN A+L
Sbjct: 744 QLPLSLCKRIQSTLTRFWW-DSKPDQRKMSWISWQKMTLSFKSGGLGFRDVQTFNKALLA 802
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFV 159
K W+L P L++K+ +Y +S LD N +
Sbjct: 803 KLSWRLLQNPSCLLAKLLLGKYCKHSTLLDWTTNWNKELI 842
>orf154 -mitochondrial genome-
Length = 154
Score = 114 bits (286), Expect = 7e-26
Identities = 54/153 (35%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Query: 51 AIPSYVMSIFRLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHK-NDGGMGFK 108
A+P Y MS FRLS L ++ M FWW + R ++W++W+KL K +DGG+GF+
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWS-SCENKRKISWVAWQKLCKSKEDDGGLGFR 60
Query: 109 DFVAFNVAMLGKQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKV 168
D FN A+L KQ +++ +P +L+S++ ++RY+P+S+ ++ +G PS+ WRSI+ +
Sbjct: 61 DLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRE 120
Query: 169 VVRQGARWKIGAGFDIPIISEPWIGSGSSIPPV 201
++ +G IG G + + WI + +PP+
Sbjct: 121 LLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.339 0.148 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,613,164
Number of Sequences: 26719
Number of extensions: 357946
Number of successful extensions: 1196
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 74
length of query: 381
length of database: 11,318,596
effective HSP length: 101
effective length of query: 280
effective length of database: 8,619,977
effective search space: 2413593560
effective search space used: 2413593560
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC136973.1