BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136953.11 + phase: 0 /pseudo
(615 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17610 putative non-LTR retroelement reverse transcriptase 61 2e-09
At2g16680 putative non-LTR retroelement reverse transcriptase 57 2e-08
At2g17910 putative non-LTR retroelement reverse transcriptase 57 4e-08
At1g47910 reverse transcriptase, putative 56 7e-08
At2g45230 putative non-LTR retroelement reverse transcriptase 53 4e-07
At2g15510 putative non-LTR retroelement reverse transcriptase 52 1e-06
At3g09510 putative non-LTR reverse transcriptase 50 4e-06
At2g25550 putative non-LTR retroelement reverse transcriptase 50 4e-06
At5g20800 putative protein 50 5e-06
At3g45550 putative protein 48 2e-05
At3g26855 putative protein 48 2e-05
At2g31520 putative non-LTR retroelement reverse transcriptase 48 2e-05
At2g41580 putative non-LTR retroelement reverse transcriptase 47 3e-05
At3g31420 hypothetical protein 47 4e-05
At2g31080 putative non-LTR retroelement reverse transcriptase 45 1e-04
At2g01840 putative non-LTR retroelement reverse transcriptase 44 2e-04
At1g26860 hypothetical protein 44 2e-04
At3g25270 hypothetical protein 44 3e-04
At2g15330 putative non-LTR retroelement reverse transcriptase 43 6e-04
At2g05200 putative non-LTR retroelement reverse transcriptase 43 6e-04
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 60.8 bits (146), Expect = 2e-09
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 254 GNHDVPV*KFERDGAYSVKSAYTNILNHDVAVVHHRVPDN--------WTCIWSLKFPSK 305
G +D + DG YSVKS Y ++L H +P +T IW P K
Sbjct: 451 GANDAITWIYTHDGNYSVKSGY-HLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPK 509
Query: 306 VKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRSGLW 365
+K F WR+ N LPT L+ + + D C + +ED HL F C S W+++ +
Sbjct: 510 IKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHI- 568
Query: 366 ILLMAIFYIDLSFPTNVFAILQHLDQQQKQVFSVTP 401
L + SF N+ +I Q L+Q ++ S+ P
Sbjct: 569 KLCPGDSLMSNSFNQNLESI-QKLNQSARKDVSLFP 603
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 266 DGAYSVKSAYTNILNHDV------AVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLP 319
+G Y+VKS Y A V+ V + +WSL+ K+K+F+W+A + L
Sbjct: 961 NGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALA 1020
Query: 320 TRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIFYIDLSFP 379
RL+S+G++ D C + E HL F C + W L I F
Sbjct: 1021 VEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVW-------ALSLIQAPATGFG 1073
Query: 380 TNVFAILQHLDQQQK 394
T++F+ + H+ Q +
Sbjct: 1074 TSIFSNINHVIQNSQ 1088
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/104 (30%), Positives = 49/104 (46%), Gaps = 14/104 (13%)
Query: 266 DGAYSVKSAYTNILNHDVAVVHHR----------VPDNWTCIWSLKFPSKVKIFLWRACR 315
+G YSVK+ Y + VHHR V + IW+L K++IFLW+A
Sbjct: 987 NGLYSVKTGYEFLSKQ----VHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALH 1042
Query: 316 NCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICW 359
+P RL+++G++ D C + D E H+ F C + W
Sbjct: 1043 GAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVW 1086
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 55.8 bits (133), Expect = 7e-08
Identities = 41/148 (27%), Positives = 60/148 (39%), Gaps = 14/148 (9%)
Query: 249 SIIPFGN---HDVPV*KFERDGAYSVKSAYTNI---LNHDVAVVHHRVPDNWTCIWSLKF 302
S +P GN D F + G Y+VKS Y LN ++ + IW ++
Sbjct: 774 SALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQC 833
Query: 303 PSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRS 362
P K++ FLW+ C+P L+ +G+ C C E H F C+ + W
Sbjct: 834 PPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW--- 890
Query: 363 GLWILLMAIFYIDLSFPTN-VFAILQHL 389
L I FP+N +F L HL
Sbjct: 891 ----ALSQIPTAPGIFPSNSIFTNLDHL 914
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 53.1 bits (126), Expect = 4e-07
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 262 KFERDGAYSVKSAY------TNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACR 315
++ R G YSVKS Y N N+ V+ + + IW L P K+ FLWR
Sbjct: 1013 EYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVN 1072
Query: 316 NCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRSGL 364
NCL L + + C E HL F C + + W S L
Sbjct: 1073 NCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPL 1121
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/106 (28%), Positives = 48/106 (44%), Gaps = 6/106 (5%)
Query: 265 RDGAYSVKSAYTNILNH---DVAVVHHRVPDNWTC---IWSLKFPSKVKIFLWRACRNCL 318
+ G YSVKS Y D+ + +P +WS K K+K+FLWR L
Sbjct: 784 KTGEYSVKSGYWLAFQSNKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAAL 843
Query: 319 PTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRSGL 364
P ++ +G+ +C + D E + H+ F C+ + W SG+
Sbjct: 844 PVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGV 889
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 50.1 bits (118), Expect = 4e-06
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 263 FERDGAYSVKSAYTNILNHDVAV------VHHRVPDNWTCIWSLKFPSKVKIFLWRACRN 316
+ G Y+V+S Y +L HD + H D T IW+L K+K FLWRA
Sbjct: 123 YNTTGEYTVRSGYW-LLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQ 181
Query: 317 CLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRS 362
L T RL ++G++ C E H F C + + W+ S
Sbjct: 182 ALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLS 227
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 50.1 bits (118), Expect = 4e-06
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 263 FERDGAYSVKSAYTNILNHDVAV------VHHRVPDNWTCIWSLKFPSKVKIFLWRACRN 316
+ G Y+V+S Y +L HD + H D T IW+L K+K FLWRA
Sbjct: 1389 YNTTGEYTVRSGYW-LLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQ 1447
Query: 317 CLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRS 362
L T RL ++G++ C E H F C + + W+ S
Sbjct: 1448 ALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLS 1493
>At5g20800 putative protein
Length = 359
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 263 FERDGAYSVKSAY----TNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCL 318
F + G Y+ KS Y ++ +++ + + W ++ P K++ FLW+ +C+
Sbjct: 89 FTKSGKYTFKSGYHTSRIEYIDTNLSFIGPEITLLKAYSWKVQCPPKLRHFLWQILASCV 148
Query: 319 PTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRS 362
P R L+ +G+ C CA + H F C+ + W S
Sbjct: 149 PVRENLRKRGINCDIGCARCGATEKTINHTLFQCHPARQIWALS 192
>At3g45550 putative protein
Length = 851
Score = 47.8 bits (112), Expect = 2e-05
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 263 FERDGAYSVKSAYTNILNHDVA------VVHHRVPDNWTCIWSLKFPSKVKIFLWRACRN 316
+ G Y+V+S Y + HD + H D T IW+L K+K FLWR
Sbjct: 628 YNSTGDYTVRSGYW-LSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSK 686
Query: 317 CLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRS 362
LPT RL ++G++ C E H F C + + W+ S
Sbjct: 687 ALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLS 732
>At3g26855 putative protein
Length = 163
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 2/62 (3%)
Query: 292 DNWTC-IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFF 350
+NW IWSLK K+K+ +W+A N LP +L S+ + C DF E TH+ F
Sbjct: 3 NNWIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDF-ETITHILF 61
Query: 351 MC 352
C
Sbjct: 62 NC 63
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 47.8 bits (112), Expect = 2e-05
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 263 FERDGAYSVKSAYTNILNHDVAV------VHHRVPDNWTCIWSLKFPSKVKIFLWRACRN 316
+ G Y+V+S Y +L HD + H D T IW+L K+K FLWRA
Sbjct: 1163 YNTTGEYTVRSGYW-LLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQ 1221
Query: 317 CLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICW 359
L T RL ++G++ C E H F C + + W
Sbjct: 1222 ALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAW 1264
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 47.0 bits (110), Expect = 3e-05
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 297 IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSM 356
IW+L K+K+FLW+ + + RL+++GV D C++ + E H+ F C +
Sbjct: 775 IWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLAR 834
Query: 357 ICW 359
W
Sbjct: 835 QVW 837
>At3g31420 hypothetical protein
Length = 1491
Score = 46.6 bits (109), Expect = 4e-05
Identities = 31/107 (28%), Positives = 48/107 (43%), Gaps = 7/107 (6%)
Query: 263 FERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTC---IWSLKFPSKVKIFLWRACRNCLP 319
+ +DG Y+VKSAY + H P + +W K K+K F W+ +
Sbjct: 1131 YTKDGMYTVKSAYWLATHLPGTTGTHPPPGDIKLKQLLWKTKTAPKIKHFCWKILSGAIA 1190
Query: 320 TRIRLQSKGVQCTDKC--AVRDDFAEDSTHLFFMCNKSMICWQRSGL 364
T L+ + + C RD+ E S HLFF C+ + W+ +GL
Sbjct: 1191 TGEMLRYRHINKQSICKRCCRDE--ETSQHLFFECDYAKATWRGAGL 1235
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 45.1 bits (105), Expect = 1e-04
Identities = 30/108 (27%), Positives = 51/108 (46%), Gaps = 2/108 (1%)
Query: 254 GNHDVPV*KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRA 313
GN D K +DGA++V+SAY+ +L DV + + IW L P +V++F+W
Sbjct: 865 GNGDEISWKGTQDGAFTVRSAYS-LLQGDVGD-RPNMGSFFNRIWKLITPERVRVFIWLV 922
Query: 314 CRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQR 361
+N + T + + + C+V + E H+ C W+R
Sbjct: 923 SQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRR 970
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 297 IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSM 356
IW LK K+K F+WR L T +L+++ + C + E H+ F C+ +
Sbjct: 1388 IWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQ 1447
Query: 357 ICWQ 360
+ W+
Sbjct: 1448 VVWR 1451
>At1g26860 hypothetical protein
Length = 240
Score = 44.3 bits (103), Expect = 2e-04
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 298 WSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMI 357
W ++ P K+ FLW+ C+P L+ +G+ C C+ E H F+C+ +
Sbjct: 19 WKVQCPPKLYHFLWQILAGCVPITDNLRKRGINCEIGCSRCGALEETINHTLFLCHPARQ 78
Query: 358 CWQRSGLWILLMAIF 372
W S + ++ I+
Sbjct: 79 IWALSQIPTIIWYIW 93
>At3g25270 hypothetical protein
Length = 343
Score = 43.5 bits (101), Expect = 3e-04
Identities = 23/68 (33%), Positives = 33/68 (47%)
Query: 297 IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSM 356
IW LK K+K FLW+ L T L+ + ++ +C E S HLFF C +
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 357 ICWQRSGL 364
W+ SG+
Sbjct: 78 QVWRASGI 85
>At2g15330 putative non-LTR retroelement reverse transcriptase
Length = 238
Score = 42.7 bits (99), Expect = 6e-04
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 263 FERDGAYSVKSAYTNILNHDVAVVHHR-VPDNWTC-----IWSLKFPSKVKIFLWRACRN 316
+ G Y+V+S Y +L+HD + VP + IW + K+K LWR
Sbjct: 51 YTTSGYYTVRSGYW-LLSHDPTDTQIKPVPPYGSVELKNKIWKIPIIPKIKYMLWRTILK 109
Query: 317 CLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIFYID- 375
LPT RL ++ + C + E H+ F + + + W+ S I++ F D
Sbjct: 110 TLPTCARLTTRSMNIDANCPRCLNEEELINHVLFKFSYTTMIWRISNSPIIVGHHFTDDA 169
Query: 376 ---LSFPTNVFAILQHLDQQQ 393
+SF + F+ +DQQ+
Sbjct: 170 EENISFLVDTFSNNNLIDQQK 190
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 42.7 bits (99), Expect = 6e-04
Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 4/101 (3%)
Query: 265 RDGAYSVKSAYTNILNHDVAVVHHRVPDNWTC-IWSLKFPSKVKIFLWRACRNCLPTRIR 323
+ G Y+ +S Y + + + NW +W L+ K+K +W+A LP I+
Sbjct: 903 KSGQYTSRSGYGIASVASIPIPQTQF--NWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQ 960
Query: 324 LQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSMICWQRSGL 364
L + + + C R E +THLFF C + W+ + L
Sbjct: 961 LVRRHISPSAACH-RCGAPESTTHLFFHCEFAAQVWELAPL 1000
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.364 0.161 0.620
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,367,719
Number of Sequences: 26719
Number of extensions: 402498
Number of successful extensions: 2017
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1930
Number of HSP's gapped (non-prelim): 80
length of query: 615
length of database: 11,318,596
effective HSP length: 105
effective length of query: 510
effective length of database: 8,513,101
effective search space: 4341681510
effective search space used: 4341681510
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 63 (28.9 bits)
Medicago: description of AC136953.11